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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000231663

Summary for COA6-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000231663

Gene symbol

COA6-AS1

Gene nameCOA6 antisense RNA 1
HGNC

40825

Entrez ID

101927765

Gene typeantisense
SynonymsCOA6-AS1|01q42.2|RP5-827C21.4
UniProtAcc

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Structure and expression level for COA6-AS1

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002316631.085834e+021.516314e+001.662851e-019.118765e+007.600000e-204.890000e-19UPLUSC
ENSG000002316638.734180e+011.068442e+001.632112e-016.546381e+005.890000e-114.020000e-10UPLIHC

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002316635.328112e-011.646193e-04CHOL4.372088e-04
ENSG00000231663-4.283753e-012.815361e-05KICH5.467906e-05
ENSG000002316633.200102e-015.628279e-11LIHC2.231211e-10

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lncRNA-Protein interaction for COA6-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for COA6-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
GSTM3,ARHGEF1,MAD2L2,GIPC1,VAMP1,ABHD17A,NAPRT,CIRBP,RNF166,MZF1,C1orf56,SHARPIN,MAPK8IP3,SRP19,PPP2R3B,HAGHL,TIMM17B,NDUFB9,METTL5,SNRPA,MSANTD2,CHKA,COMMD7,NDUFB2,ECHDC2,SDF2,COX19,CA11,VKORC1,MPLKIP,TIMMDC1,OFD1,HSPE1,RPS28,FCHSD1,CDKN2AIPNL,CFAP298,C19orf48,RBM42,CSNK2B,APBA3,MEA1,RPL35,MIIP,LPAR2,RPP38,C18orf21,C22orf39,C12orf73,CDK11A,SYMPK,MRPS2,NAGPA,DCUN1D2,MRPL41,FBXW9,GIGYF1,CCDC167,HMGN3,NDUFB1,NOL3,RABL6,PDRG1,ARHGAP33,ELOF1,HEXD,IDH3B,PTRHD1,KRTCAP3,CDK5,MCRIP1,ABHD8,GPX2,MRPL52,PRADC1,TEDC2,PES1,RBBP8NL,NMRAL1,COX6B1,CRIP2,C1orf159,NDUFS8,FAM98C,TMEM14B,IP6K2,SWI5,RPL23,FAHD2B,INO80C,GUK1,C20orf96,HSCB,ARFGAP1,RPL13A,LSM3,NUBP2,PTGES2,SRP14,STYXL1,NPDC1,PIDD1,JTB,AP5Z1,LAS1L,RFC4,P4HTM,PCED1A,MVB12A,FAM131C,RAB17,POLRMT,MPND,ANKRD49,LEMD2,H2BC21,SLC35C2,NXT1,CRACR2B,TRPT1,ROGDI,TMEM199,PCSK4,DMAC1,DDX11,SPC24,NDUFAF7,ZNF862,IDUA,CUEDC2,GSTA4,SCAND1,COX14,TLE3,HAGH,PPCDC,KHDC4,RALY,FHOD1,ATP5IF1,VPS72,NISCH,DUT,NDUFS6,NMNAT3,AP2S1,NUDC,MYPOP,NFKBIB,ATXN7L2,MSTO1,MKS1,GFER,GABBR1,TIMM9,TFAP4,MIEN1,MED25,UQCRH,TP53I13,ARMC5,PMF1-BGLAP,SNU13,SNRPD3,NDUFB5,UQCRC1,RPL36AL,CYBC1,CEBPZOS,COPE,MRPL11,SLC2A8,ARMH1,TMEM258,GEMIN6,TXN,PHF1,ABHD11,HDAC10,HSF4,NOXA1,UCK1,RGL3,HSPBAP1,SAC3D1,POLR1C,MZT2A,PSMG4,PBX4,SFXN4,MAGIX,IFI27L1,BRAT1,PSMG3,UQCR10,WDR46,VOPP1,MYG1,DTX3,ZMYND19,RNF215,MTG2,TLE5,CKS1B,MAPK11,NAT9,ABHD14A,LUC7L,LSM2,TMEM25,LRSAM1,ATP5PF,MRPL43,TOMM7,CRTC2,AMY2B,CYTH2,NOP53,NDUFB10,WRAP73,TNFRSF18,PRDX5,SH3BGRL3,C15orf61,TATDN3,SLC25A27,TXN2,HDDC3,GPANK1,SERGEF,FHIT,NDUFAB1,HRAS,PEX6,HSBP1,KCTD6,COQ8A,SAMD10,MUTYH,RPL27,CINP,PMF1,ZC3HC1,LRRC75B,SENP3,GSTM4,CFAP410,TAF1C,UBL5,RPS8,RPS11,MPV17,GGPS1,HSF1,MTRF1,DGAT1,ARVCF,PRAF2,TEDC1,WASHC1,KLC1,GPS2,NOL12,LYRM1,STUB1,MOB2,SPATA2L,COMMD6,SPATA33,ACP6,LZTS2,EMC9,DUSP28,BOLA1,CIAO3,VPS16,PLEKHO1,TTLL3,RHBDD3,HOMER3,SPSB2,LRP5L,TFPT,SH3GLB2,ZNRD2,SIRT7,B3GNTL1,ARL16,UXT,SLIRP,TUBGCP2,CTF1,POLD2,PET100,SART1,MCEE,CMC2,PEBP1,DYNC2I2,DMTF1,LMBR1L,B3GAT3,PTPRS,NDUFA11,CENATAC,SMUG1,WDR54,SAFB2,APTX,SURF2,EIF3G,INPP5K,CDK2AP2,SLC2A11,MICOS13,SUGP1,SPG7,NAA80,SIGIRR,UQCR11,USE1,TMEM208,CLK2,WDR70,LYRM4,POLG2,PSENEN,ITGB3BP,GABPB1,NASP,ANKRD39,MPST,RPAIN,ACYP1,MRPL14,IFT172,CTU2,ELMO3,DDX49,PGAP3,PFDN6,C3orf62,YJU2,C17orf97,ALKBH2,ZBED8,TMEM160,PARL,AGER,ESS2,TOP1MT,DYNLT1,PAFAH1B3,NXF1,PAN2,C2orf76,PFDN5,LRTOMT,ETV2,DUS3L,ARFGAP2,MLF2,KLHL17,HDDC2,DNASE1,SDHAF2,HDAC8,RPL23A,ALG1L,PMVK,CCDC24,UQCRHL,ALKBH3,KIF12,THOC7,COX7A2,PCYT2,IQCC,FAAP100,MMAB,PYROXD2,DNALI1,MRPL55,EMG1,SH2B1,NDUFB11,IFTAP,C19orf53,C9orf78,SPAG8,EIF2B4,MRPL28,GLMN,WDR59,SURF1,LCMT1,ACBD6,TNK2,FIS1,GTPBP6,MSRB1,TMEM138,ALKBH6,LTO1,METTL1,CCDC106,MED27,LIMD2,NELFE,METTL23,EXD3,NFKBID,C17orf75,STX8,EVA1B,ELP5,CHMP2A,DYNLT2,PPP1R3F,DNAJC19,CCHCR1,PRMT7,INPP5E,PHF11,POLR2L,QARS1,EBP,VPS4A,ODF3B,RNF220,HEMK1,IFT20,FRS3,FBXL8,PSMG2,KRTCAP2,POP5,CDIPT,GDI1,MYL5,UBXN6,UCKL1,PTCD1,PDCD2L,USF2,TRIOBP,SRA1,ASCC2,ZDHHC1,LRRC14,BLOC1S1,C11orf1,STMN1,RPS27,ZBTB8OS,MRPL34,BICRA,ARF5,CHTF18,TFEB,NAT14,ACAP1,CDK5RAP1,MARCHF9,NPRL2,CCDC85B,VAMP8,WDR24,SMIM22,FBXO46,HDAC11,SLC66A1,BCAT2,WDR45,DHRS12,STX10,SEPTIN1,UBALD1,ZBTB3,C1orf131,ENDOV,BLCAP,FAM162A,ELP6,EFNA3,ERMARD,MYL6,PRR36,EGFL7,CHADL,ARGLU1,YJEFN3,SEC61G,VMAC,TAF10,RNF25,BCL2L12,NFKBIL1,ECSIT,DYRK4,CENPS,DVL1,HOOK2,PELP1,MYL6B,C19orf25,TNIP2,NDUFA5,TRMT61A,COA5,SSBP1,ATP5F1D,NR2C1,HEBP2,SMIM19,MOK,SDSL,BOLA3,MRPS26,SMIM1,PYGO2,RRNAD1,ZSWIM7,RP11-523H20.5,RPS26,KIAA0895L,NDUFAF6,HAUS8,ZNHIT2,BANF1,PHYKPL,TMEM9,HAX1,RECQL5,PHKG2,NARF,TIMM10,BUD31,ASB6,POLR2J,TBC1D17,POLR2I,CENPT,MRTO4,NUDT2,RBM4B,SNRPB,RHOG,MRPS31,C21orf58,TMEM143,ATP5MJ,ARSA,ATP6V1F,SLC38A6,CNKSR1,CXXC1,C8orf82,PSMA4,HAUS5,MRPS33,TBC1D7,TRAIP,PDAP1,CHCHD10,NDUFC1,MTFR1L,SPIN2B,ARMC7,OAZ1,STAC3,ANKRD16,GOLGA8B,SMG9,TIMM29,GOLGA8A,PAM16,SETD4,SPATA24,CABYR,PSMC5,TSNAX,SMIM4,GALK1,C19orf18,LZTR1,USP20,MRPL54,GSDMB,TCEA2,THAP4,KRT10,ANTKMT,TMEM234,PSMB7,ATP5MG,WDR83OS,SIRT3,CTU1,PIR,XAB2,RPL41,CENPB,PNKD,NPEPL1,TUBGCP6,CCDC14,FAAP20,COA3,EIF2B5,GNPAT,PMM1,NDUFA3,SVBP,TAZ,RNF167,RCCD1,RAB4B,CPSF1,RNF187,DHX34,RING1,CHKB,CEP89,TRIM11,ABHD14B,OSGEP,CLK1,TMEM79,RPS6KB2,DHPS,WASHC3,BABAM1,CARS2,NQO1,PIH1D1,NDUFA2,BORCS6,ORMDL1,FDX2,HDHD3,CYBA,DDX51,GCAT,FAM229B,ZNF593,ATG4B,CENPM,KIF9,FAM229A,CCS,YIF1B,CDKN2D,ABCA7,TMCO6,ACOT8,COA6,IFT122,EEFSEC,GAS8,ANAPC11,SCNN1D,TOR2A,RRP7A,CCDC12,ERCC5,OARD1,DNAJC4,CCDC28B,PPP1R12C,PRR3,NICN1,PPOX,WDR53,MRPL20,TIMM44,ADPRM,HPF1,CAPN10,METRN,FAM136A,C16orf74,BCAP31,IZUMO4,BRI3,IMP4,MRPL24,GDPD3,SPACA9,MRM1,SMPD2,UBL7,NME4,TBL3,TBCA,CWC15,NFYC,CPSF4,NAA10,FBXO44,TMEM120A,ERICH2,TUSC2,MRPS15,PRR7,THOC6,UBOX5,DENND6B,ZFYVE19,TOMM22,IFI27L2,PTRH2,IL11RA,SGF29,NEK8,MBD3,SERF2,RPS10,VPS28,MRPL36,KIFC2,PSPN,NIT1,MRPS9,RABEP2,ALKBH4,NDUFAF5,AP4M1,FRG1,KHDC1,SYF2,NTHL1,STK32C,WDR27,NDUFA6,HSPBP1,EME2,NDUFAF2,B9D1,ISOC2,S100A13,DCAF15,R3HDM4,NCAPH2,ATPAF2,PNISR,AMT,ACAP3,LRRC27,NOSIP,IDH3G,MORN2,NUDT1,TRMU,PSMA2,SEM1,STMP1,DNPH1,C1orf35,LSM10,ZCWPW1,MRPL2,KLHDC4,CCNL2,CDC45,ANKRD10,CHTOP,HHLA3,LSM5,RFNG,DDTL,H2AJ,SEC61B,KYAT1,COPS9,OSBPL7,ZMAT5,FIBP,KAT2A,PLA2G6,TMEM86B,RNPS1,SLC27A3,DPY30,FLAD1,FAM50A,ITPA,MAP2K2,SF3B6,PRPF39,ALKBH7,MRPL22,TRIM45,JMJD8,WHRN,HAUS7,DEAF1,KLC4,SCRN2,GMFG,ANKS3,SMDT1,CRYGS,RPS6,HDHD5,ZNF83,NSUN6,TRAPPC3,ERCC1,PSMB1,CPNE1,IGFLR1,NKIRAS2,BTBD2,C14orf93,DPH7,NSMCE4A,CKLF,PNPLA7,HINFP,XPA,CD320,APBB3,WDR74,TRIT1,SSR2,AGAP6,TMEM115,NDUFA13,RIBC1,TMEM44,SNRPD2,EIF6,GCSH,CSAD,HSD17B8,BCL7C,OBSL1,CACTIN,FRA10AC1,RABGGTA,PEDS1,LST1,PYCR2,IFT27,ZNHIT1,SARS2,ARHGAP4,SWSAP1,RAB13,NT5C3B,UBE2D4,PA2G4,MTG1,DTNB,GTPBP3,NUDT14,C20orf27,GET3,SLC35B1,ING4,REC8,UBXN1,PEX16,FBXL6,USP21,TRIM52,COA8,PCBP4,VEGFB,MOSPD3,ATOX1,CST3,MICAL1,NDUFA8,RPS24,CNFN,TPRKB,NEDD8,TSR3,S100A11,YPEL3,SAP30BP,PIN1,ATP5MC2,ADRA2C,GNL1,RNF5,REX1BD,HSD11B1L,FASTK,DXO,NR1H2,CCDC57,RABL2B,FAM174C,TSPYL2,FKBP8,DBI,C12orf57,DPM2,RAB11B,QPCTL,HMCES,DPP7,MRPL46,TRAPPC12,ULK3,PIGX,KCTD13,CCNQ,C6orf136,UBE2T,PPIH,SLC66A2,SPRN,SUSD4,GINS2,FAM104B,GTF2H5,BNIP1,UQCC2,ILKAP,LYPLAL1,ENSA,METTL17,UROD,TMEM39B,SNHG32,CBY1,WDR83,USF1,RABL2A,SLC25A29,DERL2,B3GALT6,ATP5MK,NOC4L,TMEM101,MAPRE3,SPOUT1,SRSF2,MTLN,TSEN54,MRPL57,LMNTD2,NUPR1,FAM193B,SLC25A39,PNKP,SLC25A28,CZIB,RPA3,SPATC1L,MRPS25,EIF3K,POLM,DECR2,CLTB,DDT,SDF2L1,TRIR,HCST,JMJD4,SCNM1,RTRAF,NDUFB3,GLI4,PDE9A,NDUFB8,SSR4,NPRL3,FNDC10,MIX23,PFDN2,ACYP2,RPL37A,C8orf58,GNPTG,NUTF2,C11orf68,C6orf52,GPN2,INTS11,C5orf38,P2RY11,DUS2,NECAB3,CHCHD2,NAA38,ABHD12,CCDC137,EMD,IFT80,TSNAXIP1,DOHH,ABTB1,EPN1,TBCB,BRMS1,SYCE1L,ZC3H8,CLEC11A,PQBP1,LENG1,TMEM186,TADA2A,PEX11G,LRRC56,TRADD,COP1,TLE2,SF3A2,PTPN6,ZSWIM1,COMMD1,FIZ1,TATDN2,TM7SF2,LTB4R,CD2BP2,OGFR,PTOV1,PUSL1,GSTO1,C2orf68,TMEM134,ORAI3,UBAC1,TNFRSF14,PSME3IP1,PPP1R14B,TCF25,SMYD3,UBXN11,DDX41,CROCC,RSAD1,AKR7A2,RP9,JOSD2,CASTOR1,MVD,FAM3A,PSME2,ATAT1,IFFO1,ATP5F1E,CTBP1,CDPF1,MRPL47,UBE2J2,MTIF3,C7orf26,NDUFA7,LYPLA2,MTX1,PIGC,COQ3,EFNA4,DCAKD,CLK3,UQCRB,COQ4,PHLDB3,ECI1,ACBD4,LRRC23,TMEM223,COMTD1,PPIE,SETD6,CHMP1A,GEMIN7,C9orf116,MZT2B,CETN2,LY6G5C,NDUFA10,GON7,PIGQ,ANKRD54,RASSF7,TMEM60,YAE1,MESP1,NR2C2AP,PEX14,ARFRP1,CIAO2B,MOCS2,AAMDC,MRPL27,ARPC4,CSKMT,LIPT1,RAB26,TPGS1,MICOS10,CBX8,TRA2A,RNF126,SMARCD3,RPS13,CEP131,DUS1L,NEURL4,GPS1,RUVBL2,IRF2BP1,NADSYN1,IMMP1L,HSD17B10,RPS17,TPRA1,CFDP1,RPS29,SLC26A6,IRF3,CHCHD5,C7orf50,NRF1,C1orf122,DCTN3,GADD45GIP1,SNF8,PIGL,MIF4GD,ARV1,DDX39A,DCAF8,SLC25A1,LIN37,PPP1R16A,SS18L2,RFXANK,FAM89B,MED31,ZGLP1,UROS,SHC2,VAMP2,ANAPC7,DBP,C1orf50,DNAJB2,ANAPC2,BEND5,UFD1,COX17,SAMD1,RABAC1,TXNDC17,GAMT,PLEKHJ1,ELMOD3,TTLL1,GPATCH3,NDUFB7,NSUN5,CLN6,THYN1,PGLS,ETFB,LRRC29,FAM228B,TIGD1,RPL36A,THAP3,PCP2,CLASRP,TTC32,ZMAT1,STMN3,ZNF18,EIF2D,TMA7,ITGAE,CYP2R1,YBEY,POMZP3,SOX12,SPIRE2,RNPEPL1,KLHDC3,AARSD1,PXMP2,PARP6,TMEM238,NDUFV3,NMRK1,DGCR6L,MRPS14,CYHR1,SIRT6,TMEM54,HSPB11,TRAPPC2
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for COA6-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
STK10,FNIP1,ARID1A,RNF123,BECN1,MAP4K3,RDX,PPP1R12A,TRIP11,CAD,VTI1B,TBC1D15,EDEM1,EIF4G1,FCHO2,SLC17A5,PBRM1,PSMC1,SRP72,MAN1A2,PRRC2C,PDPK1,PHF3,PAK2,LONP2,TMEM127,STRN,GOLIM4,SURF4,TMEM33,LRP10,KIDINS220,NOCT,CDC27,GTF2H3,TMCO3,RNF31,GANAB,SEC23A,GIT2,JKAMP,MKLN1,PSME3,SMAD1,ABHD2,TM9SF1,AGFG1,FBXL14,TM7SF3,RUNX1,EIF3A,CAND1,MAIP1,FOXN3,OSBPL8,TMED1,ACTR2,DCAF7,VAMP7,RBM7,GPATCH8,SEC23B,MED1,HBP1,EIF4G2,GID4,PLEKHA7,CUL2,CAB39,HUWE1,TEP1,BACH1,GOLM2,CPD,DPP8,ALKBH1,ATF1,UBFD1,NOMO2,FAM168B,PDIA6,SINHCAF,VPS4B,ADCY7,SNX12,PMM2,POGLUT3,DNM2,EDC4,NPEPPS,SPTY2D1,SLAIN2,ARIH1,PUM1,OS9,SEC24B,FLII,FAM91A1,KMT2D,CTNNB1,AP3D1,TP53BP1,USP32,G3BP1,VPS13D,WBP11,FERMT2,DNMT1,PRMT5,CCNI,TWF1,AFF4,DDX3X,ASXL2,PHF8,ALAS1,POLR2B,ESF1,FRYL,GXYLT1,BAZ2A,PIKFYVE,ACVR1,HSPG2,SLC35A5,MAP3K3,MED13,TMEM131,USP46,SMG6,WDR1,ADNP2,SPRING1,KIAA0232,NUP98,SLC39A14,CDK12,TRIP12,AKAP10,GTF2A1,NPC1,TFIP11,GGCX,MYO18A,GOSR1,SETD7,CTNNA1,UGGT1,RPE,VRK2,GCC2,MED21,HEATR5A,AMBRA1,RUSF1,CANX,TMBIM6,HSP90AA1,MPRIP,CTDSP2,PSMD1,NCOR1,EMC1,SCAF11,CNOT1,DIABLO,NF1,MBP,SLC35E1,FEZ2,ITSN1,MYH9,SLC11A2,NUP155,UBR1,DAG1,PCDHGC3,CHD8,NOP9,TAOK3,TSR1,STAMBP,KAT5,UBE4A,VPS26A,SPTLC2,GFPT1,MACF1,VGLL4,NBR1,NUMB,SPRED2,KTN1,ILK,FARP2,UBE2D3,DOCK7,SEPTIN11,RFFL,CLIP1,SART3,RAD50,API5,NCOA2,UBE3B,SNAP23,HIF1A,PRR14L,AP2B1,RNF169,UBR5,DOCK8,CNIH1,PRKAR2A,USP9X,ROCK2,C1orf109,UEVLD,WNK1,SLC35A2,MAN2B1,SOCS7,TMLHE,KLHL5,SERINC1,RPN2,NID2,HYOU1,AP3M1,ANTXR2,NFAT5,KIF2A,REST,SOS2,MSR1,CS,ACTN4,BRF2,IL6ST,BLOC1S6,CARM1,PICALM,FAM114A2,SNX18,TECPR2,ITFG1,USP14,SPG11,GLYR1,ZNFX1,FER,CREB1,RAB6A,TNS3,TUBA1B,QKI,GDE1,OXSR1,RNF4,NT5C2,RALGAPB,HIPK1,RNF40,PIK3CB,TACC1,EPB41,SNX6,SPIRE1,PSEN1,TMEM192,CEP104,PLEKHB2,MTREX,GORASP2,POLR2A,CLTC,ATRN,PARG,ATP2A2,ALG12,SON,RAB31,HSPA8,SNX29,PMS2,APAF1,ABCB7,BBX,TAF1,BTBD7,PCNX1,CCT5,UBR4,IQGAP1,SLMAP,GSTCD,STRAP,STK24,ARHGAP5,CLCC1,CSNK2A1,COPB2,SEC14L1,ESYT1,ARSB,ZFYVE1,PDLIM5,KIF13B,DYNC1LI2,KBTBD4,ZNF106,RASA1,APP,STT3A,CERT1,PTPN9,MAP4,SWAP70,SF3A1,DDB1,ABHD5,SYNJ1,TBC1D23,ITGA6,ATP9B,TNPO1,SPAG9,NEK7,SPTLC1,HEATR5B,SEC31A,RTN4,BDP1,SYNRG,TMEM135,EIF2AK4,USP10,MCFD2,NDUFS1
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000231663ENST00000451795exon_skip_48039chr10:15838227-15838279-9.24-0.2254MINDY3ENST00000277632Frame-shift
ENSG00000231663ENST00000451795exon_skip_143275chr16:24939363-24939597-31.36-0.1633ARHGAP17ENST00000289968In-frame
ENSG00000231663ENST00000451795exon_skip_454626chr6:144827347-144827386-5.63-0.5630UTRNENST00000367545In-frame
ENSG00000231663ENST00000451795exon_skip_95407chr12:95040475-95040597-12.33-0.1054NR2C1ENST00000333003Frame-shift
ENSG00000231663ENST00000451795exon_skip_382458chr3:38131595-38131638-8.38-0.2328ACAA1ENST00000333167Frame-shift
ENSG00000231663ENST00000451795exon_skip_11029chr1:154989559-154989707-15.60-0.1091FLAD1ENST00000292180Frame-shift
ENSG00000231663ENST00000451795exon_skip_16568chr1:201989382-201989531-15.28-0.1222RNPEPENST00000295640Frame-shift
ENSG00000231663ENST00000451795exon_skip_41813chr10:68337857-68337996-13.90-0.1695HNRNPH3ENST00000265866Frame-shift
ENSG00000231663ENST00000451795exon_skip_41841chr10:68756272-68756483-20.97-0.1104CCAR1ENST00000265872Frame-shift
ENSG00000231663ENST00000451795exon_skip_52701chr10:97468965-97469104-15.52-0.1600MMS19ENST00000370782,ENST00000438925Frame-shift
ENSG00000231663ENST00000451795exon_skip_53559chr10:101793912-101793998-8.57-0.1318OGAENST00000361464Frame-shift
ENSG00000231663ENST00000451795exon_skip_66482chr11:126274926-126275021-13.61-0.1791FOXRED1ENST00000263578Frame-shift
ENSG00000231663ENST00000451795exon_skip_74009chr11:64773429-64773505-12.73-0.1989SF1ENST00000377390Frame-shift
ENSG00000231663ENST00000451795exon_skip_87733chr12:120571190-120571291-10.51-0.1118RNF10ENST00000325954Frame-shift
ENSG00000231663ENST00000451795exon_skip_92074chr12:50142052-50142110-5.25-0.1544CERS5ENST00000317551Frame-shift
ENSG00000231663ENST00000451795exon_skip_97655chr12:120579773-120579923-12.02-0.1202POP5ENST00000357500In-frame
ENSG00000231663ENST00000451795exon_skip_111746chr14:23347890-23347996-15.31-0.1531SLC22A17ENST00000397267Frame-shift
ENSG00000231663ENST00000451795exon_skip_111863chr14:23565815-23565892-12.02-0.1821AP1G2ENST00000308724,ENST00000397120Frame-shift
ENSG00000231663ENST00000451795exon_skip_114365chr14:74290026-74290118-12.73-0.1463ABCD4ENST00000356924Frame-shift
ENSG00000231663ENST00000451795exon_skip_290158chr17:42953723-42953778-6.16-0.3850AARSD1ENST00000427569Frame-shift
ENSG00000231663ENST00000451795exon_skip_300663chr19:1425877-1425960-11.81-0.2072DAZAP1ENST00000233078Frame-shift
ENSG00000231663ENST00000451795exon_skip_313557chr19:5786748-5786845-12.80-0.1471DUS3LENST00000309061Frame-shift
ENSG00000231663ENST00000451795exon_skip_319223chr19:43526200-43526349-21.79-0.1626ETHE1ENST00000292147Frame-shift
ENSG00000231663ENST00000451795exon_skip_324294chr2:27774423-27774530-10.01-0.1564MRPL33ENST00000296102Frame-shift
ENSG00000231663ENST00000451795exon_skip_326885chr2:74490024-74490127-16.43-0.1805TTC31ENST00000233623Frame-shift
ENSG00000231663ENST00000451795exon_skip_333962chr2:219247112-219247246-13.92-0.1365STK16ENST00000396738,ENST00000409638Frame-shift
ENSG00000231663ENST00000451795exon_skip_335558chr2:240596680-240596942-25.47-0.2158CAPN10ENST00000391984Frame-shift
ENSG00000231663ENST00000451795exon_skip_353131chr20:58669290-58669453-25.83-0.1832STX16ENST00000371141Frame-shift
ENSG00000231663ENST00000451795exon_skip_370518chr22:50247691-50247776-16.22-0.2192HDAC10ENST00000216271Frame-shift
ENSG00000231663ENST00000451795exon_skip_370525chr22:50250426-50250523-15.40-0.2232HDAC10ENST00000216271Frame-shift
ENSG00000231663ENST00000451795exon_skip_374497chr3:49999439-49999513-11.05-0.2009RBM6ENST00000266022Frame-shift
ENSG00000231663ENST00000451795exon_skip_377198chr3:123130479-123130616-14.28-0.1058PDIA5ENST00000316218Frame-shift
ENSG00000231663ENST00000451795exon_skip_384420chr3:49812647-49812738-11.88-0.1773UBA7ENST00000333486Frame-shift
ENSG00000231663ENST00000451795exon_skip_441368chr5:32380074-32380172-15.71-0.2182ZFRENST00000265069Frame-shift
ENSG00000231663ENST00000451795exon_skip_445390chr5:150403120-150403312-19.54-0.1206CD74ENST00000009530In-frame
ENSG00000231663ENST00000451795exon_skip_446758chr5:178212972-178213103-14.05-0.1106PHYKPLENST00000308158Frame-shift
ENSG00000231663ENST00000451795exon_skip_462160chr6:127316449-127316502-6.50-1.6250ECHDC1ENST00000531967Frame-shift
ENSG00000231663ENST00000451795exon_skip_466137chr7:48103296-48103411-13.35-0.1214UPP1ENST00000331803,ENST00000395564Frame-shift
ENSG00000231663ENST00000451795exon_skip_470226chr7:103307595-103307708-11.06-0.1164PMPCBENST00000249269Frame-shift
ENSG00000231663ENST00000451795exon_skip_476549chr7:76013741-76013887-15.94-0.1307STYXL1ENST00000248600,ENST00000359697,ENST00000431581Frame-shift
ENSG00000231663ENST00000451795exon_skip_494079chr8:144099080-144099205-20.61-0.1732SHARPINENST00000398712Frame-shift
ENSG00000231663ENST00000451795exon_skip_511212chrX:71555189-71555385-13.92-0.1170OGTENST00000373719Frame-shift
ENSG00000231663ENST00000451795exon_skip_343108chr2:127051153-127051243-16.23-0.1932BIN1ENST00000316724In-frame
ENSG00000231663ENST00000451795exon_skip_104545chr13:102767272-102767478-16.94-0.1765TEX30ENST00000376032Frame-shift
ENSG00000231663ENST00000451795exon_skip_309977chr19:49667018-49667161-15.58-0.1309BCL2L12ENST00000246785Frame-shift
ENSG00000231663ENST00000451795exon_skip_326741chr2:73946718-73946906-18.86-0.1241DGUOKENST00000264093Frame-shift
ENSG00000231663ENST00000451795exon_skip_374581chr3:50110378-50110463-8.84-0.1426RBM5ENST00000347869Frame-shift
ENSG00000231663ENST00000451795exon_skip_389267chr3:146528613-146528831-22.67-0.1080PLSCR1ENST00000342435Frame-shift
ENSG00000231663ENST00000451795exon_skip_501752chr9:136992924-136992974-10.27-0.3804PAXXENST00000371620Frame-shift
ENSG00000231663ENST00000451795exon_skip_374375chr3:49675182-49675309-14.17-0.2402APEHENST00000296456Frame-shift
ENSG00000231663ENST00000451795exon_skip_356337chr20:35118597-35118719-15.30-0.1515EDEM2ENST00000374492Frame-shift

check buttonlncRNA targets by miRNA.
lncRNA targets by miRNA
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source
ENSG00000231663hsa-mir-22ENST00000451795chr1:234372999-234373074168.00-68.5181NA
ENSG00000231663hsa-mir-22ENST00000451795chr1:234372808-234372852153.00-65.3538NA
ENSG00000231663hsa-mir-22ENST00000451795chr1:234373156-234373241148.00-77.1183NA

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Variants for COA6-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation
ENSG00000231663ENSG00000064490RFXANKACC,BLCA,BRCA,CHOL,ESCA,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,MESO,PAAD,PCPG,PRAD,READ,TGCT,THCA,THYM,UCSLIHC
ENSG00000231663ENSG00000143590EFNA3ACC,CHOL,KIRC,KIRP,LIHC,READ,TGCTLIHC
ENSG00000231663ENSG00000217555CKLFACC,CESC,DLBC,GBM,HNSC,KICH,LGG,LIHC,MESO,TGCT,THYMLIHC
ENSG00000231663ENSG00000061938TNK2BLCA,BRCA,CHOL,LAML,LUSC,UVMLUSC
ENSG00000231663ENSG00000102125TAZBLCA,BRCA,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SKCM,TGCT,THCA,THYM,UCEC,UCSLIHC
ENSG00000231663ENSG00000108773KAT2ABLCA,BRCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,SKCM,TGCT,THCA,THYM,UCECLIHC,LUSC
ENSG00000231663ENSG00000143314MRPL24BLCA,BRCA,CESC,CHOL,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UCECLUSC
ENSG00000231663ENSG00000143793C1orf35BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVMLIHC,LUSC
ENSG00000231663ENSG00000152082MZT2BBLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,LAML,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC,UCSLUSC
ENSG00000231663ENSG00000154040CABYRBLCA,CESC,ESCA,HNSC,LUSCLUSC
ENSG00000231663ENSG00000157992KRTCAP3BLCA,CESC,CHOL,DLBC,HNSC,LUSC,OV,PRAD,UCSLUSC
ENSG00000231663ENSG00000160972PPP1R16ABLCA,BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,PAAD,THCA,THYMLIHC
ENSG00000231663ENSG00000163463KRTCAP2BLCA,BRCA,CESC,CHOL,COAD,ESCA,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,MESO,OV,PAAD,PCPG,PRAD,READ,STAD,TGCT,THCA,THYM,UCEC,UCSLIHC
ENSG00000231663ENSG00000166965RCCD1BLCA,CHOL,ESCA,HNSC,KIRC,KIRP,LUAD,LUSC,THCALUSC
ENSG00000231663ENSG00000167393PPP2R3BBLCA,BRCA,CHOL,ESCA,HNSC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCECLUSC
ENSG00000231663ENSG00000168096ANKS3BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,MESO,PAAD,PCPG,PRAD,READ,SKCM,TGCT,THCA,THYM,UCECLIHC
ENSG00000231663ENSG00000168275COA6BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,HNSC,KICH,LGG,LIHC,LUAD,LUSC,OV,PCPG,PRAD,READ,STAD,TGCT,THCA,THYM,UCEC,UCSLIHC,LUSC
ENSG00000231663ENSG00000173272MZT2ABLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KICH,LAML,LGG,LIHC,LUSC,MESO,PRAD,TGCT,THCA,THYMLUSC
ENSG00000231663ENSG00000182173TSEN54BLCA,BRCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUSC,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCSLIHC
ENSG00000231663ENSG00000184162NR2C2APBLCA,BRCA,CHOL,ESCA,HNSC,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PCPG,PRAD,READ,THYM,UVMLUSC
ENSG00000231663ENSG00000204220PFDN6BLCA,BRCA,CHOL,COAD,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,READ,TGCT,THCA,THYM,UCECLIHC
ENSG00000231663ENSG00000239382ALKBH6BLCA,CESC,DLBC,LUSC,THYMLUSC
ENSG00000231663ENSG00000241343RPL36ABLCA,BRCA,CHOL,DLBC,ESCA,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC,UCS,UVMLIHC
ENSG00000231663ENSG00000250067YJEFN3BLCA,CHOL,DLBC,KIRC,KIRP,LGG,LUSC,PAAD,PRAD,UCEC,UVMLUSC
ENSG00000231663ENSG00000273899NOL12BLCA,BRCA,CHOL,COAD,DLBC,HNSC,KICH,KIRC,KIRP,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,STAD,THCA,THYM,UCEC,UCSLUSC
ENSG00000231663ENSG00000071859FAM50ABRCA,CHOL,DLBC,HNSC,KIRC,KIRP,LAML,LGG,LIHC,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCECLIHC
ENSG00000231663ENSG00000100908EMC9BRCA,CESC,CHOL,ESCA,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,THCA,THYMLUSC
ENSG00000231663ENSG00000106268NUDT1BRCA,CESC,CHOL,ESCA,HNSC,KIRP,LGG,LIHC,READ,THYM,UCSLIHC
ENSG00000231663ENSG00000109065NAT9BRCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,PRAD,THCA,UCECLIHC
ENSG00000231663ENSG00000111671SPSB2BRCA,CHOL,DLBC,ESCA,HNSC,LIHC,PCPG,PRAD,THCALIHC
ENSG00000231663ENSG00000125835SNRPBBRCA,CHOL,ESCA,HNSC,LAML,LIHC,LUSC,MESO,PRAD,THYM,UCSLIHC,LUSC
ENSG00000231663ENSG00000130005GAMTBRCA,ESCA,HNSC,KICH,LGG,LUSC,MESO,PCPG,PRAD,THCA,THYMLUSC
ENSG00000231663ENSG00000163156SCNM1BRCA,CESC,CHOL,COAD,ESCA,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,MESO,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC,UCSLIHC
ENSG00000231663ENSG00000165948IFI27L1BRCA,CHOL,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,MESO,PCPG,PRAD,THCA,THYMLIHC
ENSG00000231663ENSG00000204536CCHCR1BRCA,CHOL,KICH,KIRP,LGG,LIHC,READ,TGCT,THYM,UCECLIHC
ENSG00000231663ENSG00000087842PIRCESC,ESCA,HNSC,LIHC,LUSC,MESO,PAADLUSC
ENSG00000231663ENSG00000134202GSTM3CESC,DLBC,ESCA,HNSC,KICH,LUSCLUSC
ENSG00000231663ENSG00000134253TRIM45CESC,CHOL,HNSC,KICH,KIRP,LUSC,MESO,PCPG,UCEC,UVMLUSC
ENSG00000231663ENSG00000160124MIX23CESC,CHOL,COAD,ESCA,HNSC,KIRC,KIRP,LGG,LIHC,LUSC,PCPG,PRAD,THCA,THYM,UVMLUSC
ENSG00000231663ENSG00000161888SPC24CESC,CHOL,HNSC,KIRC,LGG,LUSC,MESO,READ,TGCT,THYM,UCSLUSC
ENSG00000231663ENSG00000168061SAC3D1CESC,CHOL,ESCA,HNSC,KICH,KIRP,LGG,LIHC,PAAD,THYMLIHC
ENSG00000231663ENSG00000181019NQO1CESC,CHOL,ESCA,HNSC,LUSCLUSC
ENSG00000231663ENSG00000189366ALG1LCESC,CHOL,ESCA,HNSC,LUSCLUSC
ENSG00000231663ENSG00000205981DNAJC19CESC,ESCA,GBM,HNSC,KICH,LUSC,PAAD,SKCM,STAD,THCA,UCS,UVMLUSC
ENSG00000231663ENSG00000077152UBE2TCHOL,ESCA,HNSC,KICH,LUSC,UCSLUSC
ENSG00000231663ENSG00000093009CDC45CHOL,ESCA,HNSC,LUSC,MESOLUSC
ENSG00000231663ENSG00000108641B9D1CHOL,ESCA,GBM,HNSC,KICH,KIRP,LIHC,MESO,OV,PAAD,PRAD,THCALIHC
ENSG00000231663ENSG00000123136DDX39ACHOL,ESCA,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,PCPG,PRAD,THCA,THYMLIHC
ENSG00000231663ENSG00000125459MSTO1CHOL,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PCPG,THYM,UCECLIHC
ENSG00000231663ENSG00000126249PDCD2LCHOL,HNSC,LUSC,PAAD,PRADLUSC
ENSG00000231663ENSG00000130299GTPBP3CHOL,ESCA,HNSC,KIRC,KIRP,LUAD,LUSC,THCA,UVMLUSC
ENSG00000231663ENSG00000131351HAUS8CHOL,ESCA,HNSC,LUSC,THYMLUSC
ENSG00000231663ENSG00000132680KHDC4CHOL,HNSC,KICH,KIRC,KIRP,LUSC,STADLUSC
ENSG00000231663ENSG00000136522MRPL47CHOL,ESCA,HNSC,LIHC,LUSC,MESO,PRAD,THCA,THYM,UCSLUSC
ENSG00000231663ENSG00000141570CBX8CHOL,HNSC,KICH,KIRC,LIHC,LUAD,PAAD,THCALIHC
ENSG00000231663ENSG00000143633C1orf131CHOL,COAD,ESCA,HNSC,KICH,KIRC,LUSC,OV,STADLUSC
ENSG00000231663ENSG00000160688FLAD1CHOL,ESCA,HNSC,KICH,KIRC,LGG,LIHC,LUSC,MESO,PRAD,THYM,UCSLIHC,LUSC
ENSG00000231663ENSG00000162062TEDC2CHOL,ESCA,HNSC,LUSC,MESO,THYM,UCSLUSC
ENSG00000231663ENSG00000163472TMEM79CHOL,KICH,KIRC,LGG,LIHCLIHC
ENSG00000231663ENSG00000163864NMNAT3CHOL,ESCA,GBM,HNSC,LUSC,PAAD,UVMLUSC
ENSG00000231663ENSG00000163918RFC4CHOL,ESCA,GBM,HNSC,KICH,LUSC,MESO,UVMLUSC
ENSG00000231663ENSG00000167747C19orf48CHOL,ESCA,HNSC,LIHC,PRAD,THCA,THYM,UCSLIHC
ENSG00000231663ENSG00000173207CKS1BCHOL,ESCA,HNSC,KICH,LIHC,MESOLIHC
ENSG00000231663ENSG00000184160ADRA2CCHOL,ESCA,HNSC,KICH,LIHC,PAAD,TGCTLIHC
ENSG00000231663ENSG00000196510ANAPC7CHOL,ESCA,HNSC,KICH,KIRC,LUSC,THCALUSC
ENSG00000231663ENSG00000213903LTB4RCHOL,DLBC,KIRC,KIRP,LUSC,PAAD,THCA,UCEC,UCS,UVMLUSC
ENSG00000231663ENSG00000243364EFNA4CHOL,HNSC,KICH,KIRC,KIRP,LIHC,TGCT,UCSLIHC
ENSG00000231663ENSG00000136521NDUFB5DLBC,ESCA,HNSC,LUSC,UVMLUSC
ENSG00000231663ENSG00000140905GCSHESCA,GBM,HNSC,LUSC,THCALUSC
ENSG00000231663ENSG00000143502SUSD4ESCA,HNSC,KICH,LUSC,PAADLUSC
ENSG00000231663ENSG00000163170BOLA3ESCA,HNSC,LIHC,LUSC,PAAD,PRAD,THCA,THYMLUSC
ENSG00000231663ENSG00000163964PIGXESCA,LUSC,MESO,UCS,UVMLUSC
ENSG00000231663ENSG00000115541HSPE1GBM,HNSC,LGG,LIHC,LUSC,UCSLUSC
ENSG00000231663ENSG00000184678H2BC21KICH,KIRC,LAML,LUSC,PAAD,READ,UCSLUSC

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000231663ENST00000451795SLC39A14ENSG00000104635ENST00000240095-0.1515274-LIHC
ENSG00000231663ENST00000451795IL6STENSG00000134352ENST00000502326-0.2356245-LUSC,LIHC
ENSG00000231663ENST00000451795ANTXR2ENSG00000163297ENST00000404191-0.629390-LUSC,LIHC
ENSG00000231663ENST00000451795ANTXR2ENSG00000163297ENST00000346652-0.5640244-LUSC,LIHC
ENSG00000231663ENST00000451795PDLIM5ENSG00000163110ENST00000512274-0.1129183-LIHC
ENSG00000231663ENST00000451795PDLIM5ENSG00000163110ENST00000504489-0.10961-LIHC
ENSG00000231663ENST00000451795PDLIM5ENSG00000163110ENST00000506632-0.19961-LIHC

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types
ENSG00000231663COA6-AS1,hsa-mir-22,C1orf35KICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,USP21KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,FUZKICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,RBM8AKICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,NRF1KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,ILKAPKICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,EHMT2KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,PHC1KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,IFT122KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,POLR2HKICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,SALL2KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,BRAT1CHOL,MESO,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,ING5KICH,CHOL,MESO,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,CEP131CHOL,MESO,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,PRPF38AKICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,GABBR1KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,STMN1KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,TSEN54KICH,CHOL,MESO,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,CRTC2KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,FBXO46KICH,CHOL,MESO,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,ATG4BKICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,CCDC57KICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,COPS7BKICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,INTS11KICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,RECQL5KICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,C14orf93KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,ENDOVKICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,UBXN11KICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,FANCGKICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,SSBP4KICH,CHOL,MESO,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,KDM5BKICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,LIG1KICH,CHOL,MESO,UCS,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,SRRTKICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,PMF1KICH,CHOL,UCS,PAAD,KIRP
ENSG00000231663COA6-AS1,hsa-mir-22,CCHCR1KICH,CHOL,MESO,UCS,KIRP

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000231663.1ENST00000451795.178587351