lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | GSTM3,ARHGEF1,MAD2L2,GIPC1,VAMP1,ABHD17A,NAPRT,CIRBP,RNF166,MZF1,C1orf56,SHARPIN,MAPK8IP3,SRP19,PPP2R3B,HAGHL,TIMM17B,NDUFB9,METTL5,SNRPA,MSANTD2,CHKA,COMMD7,NDUFB2,ECHDC2,SDF2,COX19,CA11,VKORC1,MPLKIP,TIMMDC1,OFD1,HSPE1,RPS28,FCHSD1,CDKN2AIPNL,CFAP298,C19orf48,RBM42,CSNK2B,APBA3,MEA1,RPL35,MIIP,LPAR2,RPP38,C18orf21,C22orf39,C12orf73,CDK11A,SYMPK,MRPS2,NAGPA,DCUN1D2,MRPL41,FBXW9,GIGYF1,CCDC167,HMGN3,NDUFB1,NOL3,RABL6,PDRG1,ARHGAP33,ELOF1,HEXD,IDH3B,PTRHD1,KRTCAP3,CDK5,MCRIP1,ABHD8,GPX2,MRPL52,PRADC1,TEDC2,PES1,RBBP8NL,NMRAL1,COX6B1,CRIP2,C1orf159,NDUFS8,FAM98C,TMEM14B,IP6K2,SWI5,RPL23,FAHD2B,INO80C,GUK1,C20orf96,HSCB,ARFGAP1,RPL13A,LSM3,NUBP2,PTGES2,SRP14,STYXL1,NPDC1,PIDD1,JTB,AP5Z1,LAS1L,RFC4,P4HTM,PCED1A,MVB12A,FAM131C,RAB17,POLRMT,MPND,ANKRD49,LEMD2,H2BC21,SLC35C2,NXT1,CRACR2B,TRPT1,ROGDI,TMEM199,PCSK4,DMAC1,DDX11,SPC24,NDUFAF7,ZNF862,IDUA,CUEDC2,GSTA4,SCAND1,COX14,TLE3,HAGH,PPCDC,KHDC4,RALY,FHOD1,ATP5IF1,VPS72,NISCH,DUT,NDUFS6,NMNAT3,AP2S1,NUDC,MYPOP,NFKBIB,ATXN7L2,MSTO1,MKS1,GFER,GABBR1,TIMM9,TFAP4,MIEN1,MED25,UQCRH,TP53I13,ARMC5,PMF1-BGLAP,SNU13,SNRPD3,NDUFB5,UQCRC1,RPL36AL,CYBC1,CEBPZOS,COPE,MRPL11,SLC2A8,ARMH1,TMEM258,GEMIN6,TXN,PHF1,ABHD11,HDAC10,HSF4,NOXA1,UCK1,RGL3,HSPBAP1,SAC3D1,POLR1C,MZT2A,PSMG4,PBX4,SFXN4,MAGIX,IFI27L1,BRAT1,PSMG3,UQCR10,WDR46,VOPP1,MYG1,DTX3,ZMYND19,RNF215,MTG2,TLE5,CKS1B,MAPK11,NAT9,ABHD14A,LUC7L,LSM2,TMEM25,LRSAM1,ATP5PF,MRPL43,TOMM7,CRTC2,AMY2B,CYTH2,NOP53,NDUFB10,WRAP73,TNFRSF18,PRDX5,SH3BGRL3,C15orf61,TATDN3,SLC25A27,TXN2,HDDC3,GPANK1,SERGEF,FHIT,NDUFAB1,HRAS,PEX6,HSBP1,KCTD6,COQ8A,SAMD10,MUTYH,RPL27,CINP,PMF1,ZC3HC1,LRRC75B,SENP3,GSTM4,CFAP410,TAF1C,UBL5,RPS8,RPS11,MPV17,GGPS1,HSF1,MTRF1,DGAT1,ARVCF,PRAF2,TEDC1,WASHC1,KLC1,GPS2,NOL12,LYRM1,STUB1,MOB2,SPATA2L,COMMD6,SPATA33,ACP6,LZTS2,EMC9,DUSP28,BOLA1,CIAO3,VPS16,PLEKHO1,TTLL3,RHBDD3,HOMER3,SPSB2,LRP5L,TFPT,SH3GLB2,ZNRD2,SIRT7,B3GNTL1,ARL16,UXT,SLIRP,TUBGCP2,CTF1,POLD2,PET100,SART1,MCEE,CMC2,PEBP1,DYNC2I2,DMTF1,LMBR1L,B3GAT3,PTPRS,NDUFA11,CENATAC,SMUG1,WDR54,SAFB2,APTX,SURF2,EIF3G,INPP5K,CDK2AP2,SLC2A11,MICOS13,SUGP1,SPG7,NAA80,SIGIRR,UQCR11,USE1,TMEM208,CLK2,WDR70,LYRM4,POLG2,PSENEN,ITGB3BP,GABPB1,NASP,ANKRD39,MPST,RPAIN,ACYP1,MRPL14,IFT172,CTU2,ELMO3,DDX49,PGAP3,PFDN6,C3orf62,YJU2,C17orf97,ALKBH2,ZBED8,TMEM160,PARL,AGER,ESS2,TOP1MT,DYNLT1,PAFAH1B3,NXF1,PAN2,C2orf76,PFDN5,LRTOMT,ETV2,DUS3L,ARFGAP2,MLF2,KLHL17,HDDC2,DNASE1,SDHAF2,HDAC8,RPL23A,ALG1L,PMVK,CCDC24,UQCRHL,ALKBH3,KIF12,THOC7,COX7A2,PCYT2,IQCC,FAAP100,MMAB,PYROXD2,DNALI1,MRPL55,EMG1,SH2B1,NDUFB11,IFTAP,C19orf53,C9orf78,SPAG8,EIF2B4,MRPL28,GLMN,WDR59,SURF1,LCMT1,ACBD6,TNK2,FIS1,GTPBP6,MSRB1,TMEM138,ALKBH6,LTO1,METTL1,CCDC106,MED27,LIMD2,NELFE,METTL23,EXD3,NFKBID,C17orf75,STX8,EVA1B,ELP5,CHMP2A,DYNLT2,PPP1R3F,DNAJC19,CCHCR1,PRMT7,INPP5E,PHF11,POLR2L,QARS1,EBP,VPS4A,ODF3B,RNF220,HEMK1,IFT20,FRS3,FBXL8,PSMG2,KRTCAP2,POP5,CDIPT,GDI1,MYL5,UBXN6,UCKL1,PTCD1,PDCD2L,USF2,TRIOBP,SRA1,ASCC2,ZDHHC1,LRRC14,BLOC1S1,C11orf1,STMN1,RPS27,ZBTB8OS,MRPL34,BICRA,ARF5,CHTF18,TFEB,NAT14,ACAP1,CDK5RAP1,MARCHF9,NPRL2,CCDC85B,VAMP8,WDR24,SMIM22,FBXO46,HDAC11,SLC66A1,BCAT2,WDR45,DHRS12,STX10,SEPTIN1,UBALD1,ZBTB3,C1orf131,ENDOV,BLCAP,FAM162A,ELP6,EFNA3,ERMARD,MYL6,PRR36,EGFL7,CHADL,ARGLU1,YJEFN3,SEC61G,VMAC,TAF10,RNF25,BCL2L12,NFKBIL1,ECSIT,DYRK4,CENPS,DVL1,HOOK2,PELP1,MYL6B,C19orf25,TNIP2,NDUFA5,TRMT61A,COA5,SSBP1,ATP5F1D,NR2C1,HEBP2,SMIM19,MOK,SDSL,BOLA3,MRPS26,SMIM1,PYGO2,RRNAD1,ZSWIM7,RP11-523H20.5,RPS26,KIAA0895L,NDUFAF6,HAUS8,ZNHIT2,BANF1,PHYKPL,TMEM9,HAX1,RECQL5,PHKG2,NARF,TIMM10,BUD31,ASB6,POLR2J,TBC1D17,POLR2I,CENPT,MRTO4,NUDT2,RBM4B,SNRPB,RHOG,MRPS31,C21orf58,TMEM143,ATP5MJ,ARSA,ATP6V1F,SLC38A6,CNKSR1,CXXC1,C8orf82,PSMA4,HAUS5,MRPS33,TBC1D7,TRAIP,PDAP1,CHCHD10,NDUFC1,MTFR1L,SPIN2B,ARMC7,OAZ1,STAC3,ANKRD16,GOLGA8B,SMG9,TIMM29,GOLGA8A,PAM16,SETD4,SPATA24,CABYR,PSMC5,TSNAX,SMIM4,GALK1,C19orf18,LZTR1,USP20,MRPL54,GSDMB,TCEA2,THAP4,KRT10,ANTKMT,TMEM234,PSMB7,ATP5MG,WDR83OS,SIRT3,CTU1,PIR,XAB2,RPL41,CENPB,PNKD,NPEPL1,TUBGCP6,CCDC14,FAAP20,COA3,EIF2B5,GNPAT,PMM1,NDUFA3,SVBP,TAZ,RNF167,RCCD1,RAB4B,CPSF1,RNF187,DHX34,RING1,CHKB,CEP89,TRIM11,ABHD14B,OSGEP,CLK1,TMEM79,RPS6KB2,DHPS,WASHC3,BABAM1,CARS2,NQO1,PIH1D1,NDUFA2,BORCS6,ORMDL1,FDX2,HDHD3,CYBA,DDX51,GCAT,FAM229B,ZNF593,ATG4B,CENPM,KIF9,FAM229A,CCS,YIF1B,CDKN2D,ABCA7,TMCO6,ACOT8,COA6,IFT122,EEFSEC,GAS8,ANAPC11,SCNN1D,TOR2A,RRP7A,CCDC12,ERCC5,OARD1,DNAJC4,CCDC28B,PPP1R12C,PRR3,NICN1,PPOX,WDR53,MRPL20,TIMM44,ADPRM,HPF1,CAPN10,METRN,FAM136A,C16orf74,BCAP31,IZUMO4,BRI3,IMP4,MRPL24,GDPD3,SPACA9,MRM1,SMPD2,UBL7,NME4,TBL3,TBCA,CWC15,NFYC,CPSF4,NAA10,FBXO44,TMEM120A,ERICH2,TUSC2,MRPS15,PRR7,THOC6,UBOX5,DENND6B,ZFYVE19,TOMM22,IFI27L2,PTRH2,IL11RA,SGF29,NEK8,MBD3,SERF2,RPS10,VPS28,MRPL36,KIFC2,PSPN,NIT1,MRPS9,RABEP2,ALKBH4,NDUFAF5,AP4M1,FRG1,KHDC1,SYF2,NTHL1,STK32C,WDR27,NDUFA6,HSPBP1,EME2,NDUFAF2,B9D1,ISOC2,S100A13,DCAF15,R3HDM4,NCAPH2,ATPAF2,PNISR,AMT,ACAP3,LRRC27,NOSIP,IDH3G,MORN2,NUDT1,TRMU,PSMA2,SEM1,STMP1,DNPH1,C1orf35,LSM10,ZCWPW1,MRPL2,KLHDC4,CCNL2,CDC45,ANKRD10,CHTOP,HHLA3,LSM5,RFNG,DDTL,H2AJ,SEC61B,KYAT1,COPS9,OSBPL7,ZMAT5,FIBP,KAT2A,PLA2G6,TMEM86B,RNPS1,SLC27A3,DPY30,FLAD1,FAM50A,ITPA,MAP2K2,SF3B6,PRPF39,ALKBH7,MRPL22,TRIM45,JMJD8,WHRN,HAUS7,DEAF1,KLC4,SCRN2,GMFG,ANKS3,SMDT1,CRYGS,RPS6,HDHD5,ZNF83,NSUN6,TRAPPC3,ERCC1,PSMB1,CPNE1,IGFLR1,NKIRAS2,BTBD2,C14orf93,DPH7,NSMCE4A,CKLF,PNPLA7,HINFP,XPA,CD320,APBB3,WDR74,TRIT1,SSR2,AGAP6,TMEM115,NDUFA13,RIBC1,TMEM44,SNRPD2,EIF6,GCSH,CSAD,HSD17B8,BCL7C,OBSL1,CACTIN,FRA10AC1,RABGGTA,PEDS1,LST1,PYCR2,IFT27,ZNHIT1,SARS2,ARHGAP4,SWSAP1,RAB13,NT5C3B,UBE2D4,PA2G4,MTG1,DTNB,GTPBP3,NUDT14,C20orf27,GET3,SLC35B1,ING4,REC8,UBXN1,PEX16,FBXL6,USP21,TRIM52,COA8,PCBP4,VEGFB,MOSPD3,ATOX1,CST3,MICAL1,NDUFA8,RPS24,CNFN,TPRKB,NEDD8,TSR3,S100A11,YPEL3,SAP30BP,PIN1,ATP5MC2,ADRA2C,GNL1,RNF5,REX1BD,HSD11B1L,FASTK,DXO,NR1H2,CCDC57,RABL2B,FAM174C,TSPYL2,FKBP8,DBI,C12orf57,DPM2,RAB11B,QPCTL,HMCES,DPP7,MRPL46,TRAPPC12,ULK3,PIGX,KCTD13,CCNQ,C6orf136,UBE2T,PPIH,SLC66A2,SPRN,SUSD4,GINS2,FAM104B,GTF2H5,BNIP1,UQCC2,ILKAP,LYPLAL1,ENSA,METTL17,UROD,TMEM39B,SNHG32,CBY1,WDR83,USF1,RABL2A,SLC25A29,DERL2,B3GALT6,ATP5MK,NOC4L,TMEM101,MAPRE3,SPOUT1,SRSF2,MTLN,TSEN54,MRPL57,LMNTD2,NUPR1,FAM193B,SLC25A39,PNKP,SLC25A28,CZIB,RPA3,SPATC1L,MRPS25,EIF3K,POLM,DECR2,CLTB,DDT,SDF2L1,TRIR,HCST,JMJD4,SCNM1,RTRAF,NDUFB3,GLI4,PDE9A,NDUFB8,SSR4,NPRL3,FNDC10,MIX23,PFDN2,ACYP2,RPL37A,C8orf58,GNPTG,NUTF2,C11orf68,C6orf52,GPN2,INTS11,C5orf38,P2RY11,DUS2,NECAB3,CHCHD2,NAA38,ABHD12,CCDC137,EMD,IFT80,TSNAXIP1,DOHH,ABTB1,EPN1,TBCB,BRMS1,SYCE1L,ZC3H8,CLEC11A,PQBP1,LENG1,TMEM186,TADA2A,PEX11G,LRRC56,TRADD,COP1,TLE2,SF3A2,PTPN6,ZSWIM1,COMMD1,FIZ1,TATDN2,TM7SF2,LTB4R,CD2BP2,OGFR,PTOV1,PUSL1,GSTO1,C2orf68,TMEM134,ORAI3,UBAC1,TNFRSF14,PSME3IP1,PPP1R14B,TCF25,SMYD3,UBXN11,DDX41,CROCC,RSAD1,AKR7A2,RP9,JOSD2,CASTOR1,MVD,FAM3A,PSME2,ATAT1,IFFO1,ATP5F1E,CTBP1,CDPF1,MRPL47,UBE2J2,MTIF3,C7orf26,NDUFA7,LYPLA2,MTX1,PIGC,COQ3,EFNA4,DCAKD,CLK3,UQCRB,COQ4,PHLDB3,ECI1,ACBD4,LRRC23,TMEM223,COMTD1,PPIE,SETD6,CHMP1A,GEMIN7,C9orf116,MZT2B,CETN2,LY6G5C,NDUFA10,GON7,PIGQ,ANKRD54,RASSF7,TMEM60,YAE1,MESP1,NR2C2AP,PEX14,ARFRP1,CIAO2B,MOCS2,AAMDC,MRPL27,ARPC4,CSKMT,LIPT1,RAB26,TPGS1,MICOS10,CBX8,TRA2A,RNF126,SMARCD3,RPS13,CEP131,DUS1L,NEURL4,GPS1,RUVBL2,IRF2BP1,NADSYN1,IMMP1L,HSD17B10,RPS17,TPRA1,CFDP1,RPS29,SLC26A6,IRF3,CHCHD5,C7orf50,NRF1,C1orf122,DCTN3,GADD45GIP1,SNF8,PIGL,MIF4GD,ARV1,DDX39A,DCAF8,SLC25A1,LIN37,PPP1R16A,SS18L2,RFXANK,FAM89B,MED31,ZGLP1,UROS,SHC2,VAMP2,ANAPC7,DBP,C1orf50,DNAJB2,ANAPC2,BEND5,UFD1,COX17,SAMD1,RABAC1,TXNDC17,GAMT,PLEKHJ1,ELMOD3,TTLL1,GPATCH3,NDUFB7,NSUN5,CLN6,THYN1,PGLS,ETFB,LRRC29,FAM228B,TIGD1,RPL36A,THAP3,PCP2,CLASRP,TTC32,ZMAT1,STMN3,ZNF18,EIF2D,TMA7,ITGAE,CYP2R1,YBEY,POMZP3,SOX12,SPIRE2,RNPEPL1,KLHDC3,AARSD1,PXMP2,PARP6,TMEM238,NDUFV3,NMRK1,DGCR6L,MRPS14,CYHR1,SIRT6,TMEM54,HSPB11,TRAPPC2 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | STK10,FNIP1,ARID1A,RNF123,BECN1,MAP4K3,RDX,PPP1R12A,TRIP11,CAD,VTI1B,TBC1D15,EDEM1,EIF4G1,FCHO2,SLC17A5,PBRM1,PSMC1,SRP72,MAN1A2,PRRC2C,PDPK1,PHF3,PAK2,LONP2,TMEM127,STRN,GOLIM4,SURF4,TMEM33,LRP10,KIDINS220,NOCT,CDC27,GTF2H3,TMCO3,RNF31,GANAB,SEC23A,GIT2,JKAMP,MKLN1,PSME3,SMAD1,ABHD2,TM9SF1,AGFG1,FBXL14,TM7SF3,RUNX1,EIF3A,CAND1,MAIP1,FOXN3,OSBPL8,TMED1,ACTR2,DCAF7,VAMP7,RBM7,GPATCH8,SEC23B,MED1,HBP1,EIF4G2,GID4,PLEKHA7,CUL2,CAB39,HUWE1,TEP1,BACH1,GOLM2,CPD,DPP8,ALKBH1,ATF1,UBFD1,NOMO2,FAM168B,PDIA6,SINHCAF,VPS4B,ADCY7,SNX12,PMM2,POGLUT3,DNM2,EDC4,NPEPPS,SPTY2D1,SLAIN2,ARIH1,PUM1,OS9,SEC24B,FLII,FAM91A1,KMT2D,CTNNB1,AP3D1,TP53BP1,USP32,G3BP1,VPS13D,WBP11,FERMT2,DNMT1,PRMT5,CCNI,TWF1,AFF4,DDX3X,ASXL2,PHF8,ALAS1,POLR2B,ESF1,FRYL,GXYLT1,BAZ2A,PIKFYVE,ACVR1,HSPG2,SLC35A5,MAP3K3,MED13,TMEM131,USP46,SMG6,WDR1,ADNP2,SPRING1,KIAA0232,NUP98,SLC39A14,CDK12,TRIP12,AKAP10,GTF2A1,NPC1,TFIP11,GGCX,MYO18A,GOSR1,SETD7,CTNNA1,UGGT1,RPE,VRK2,GCC2,MED21,HEATR5A,AMBRA1,RUSF1,CANX,TMBIM6,HSP90AA1,MPRIP,CTDSP2,PSMD1,NCOR1,EMC1,SCAF11,CNOT1,DIABLO,NF1,MBP,SLC35E1,FEZ2,ITSN1,MYH9,SLC11A2,NUP155,UBR1,DAG1,PCDHGC3,CHD8,NOP9,TAOK3,TSR1,STAMBP,KAT5,UBE4A,VPS26A,SPTLC2,GFPT1,MACF1,VGLL4,NBR1,NUMB,SPRED2,KTN1,ILK,FARP2,UBE2D3,DOCK7,SEPTIN11,RFFL,CLIP1,SART3,RAD50,API5,NCOA2,UBE3B,SNAP23,HIF1A,PRR14L,AP2B1,RNF169,UBR5,DOCK8,CNIH1,PRKAR2A,USP9X,ROCK2,C1orf109,UEVLD,WNK1,SLC35A2,MAN2B1,SOCS7,TMLHE,KLHL5,SERINC1,RPN2,NID2,HYOU1,AP3M1,ANTXR2,NFAT5,KIF2A,REST,SOS2,MSR1,CS,ACTN4,BRF2,IL6ST,BLOC1S6,CARM1,PICALM,FAM114A2,SNX18,TECPR2,ITFG1,USP14,SPG11,GLYR1,ZNFX1,FER,CREB1,RAB6A,TNS3,TUBA1B,QKI,GDE1,OXSR1,RNF4,NT5C2,RALGAPB,HIPK1,RNF40,PIK3CB,TACC1,EPB41,SNX6,SPIRE1,PSEN1,TMEM192,CEP104,PLEKHB2,MTREX,GORASP2,POLR2A,CLTC,ATRN,PARG,ATP2A2,ALG12,SON,RAB31,HSPA8,SNX29,PMS2,APAF1,ABCB7,BBX,TAF1,BTBD7,PCNX1,CCT5,UBR4,IQGAP1,SLMAP,GSTCD,STRAP,STK24,ARHGAP5,CLCC1,CSNK2A1,COPB2,SEC14L1,ESYT1,ARSB,ZFYVE1,PDLIM5,KIF13B,DYNC1LI2,KBTBD4,ZNF106,RASA1,APP,STT3A,CERT1,PTPN9,MAP4,SWAP70,SF3A1,DDB1,ABHD5,SYNJ1,TBC1D23,ITGA6,ATP9B,TNPO1,SPAG9,NEK7,SPTLC1,HEATR5B,SEC31A,RTN4,BDP1,SYNRG,TMEM135,EIF2AK4,USP10,MCFD2,NDUFS1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
 |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000231663 | ENST00000451795 | exon_skip_48039 | chr10:15838227-15838279 | -9.24 | -0.2254 | MINDY3 | ENST00000277632 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_143275 | chr16:24939363-24939597 | -31.36 | -0.1633 | ARHGAP17 | ENST00000289968 | In-frame | ENSG00000231663 | ENST00000451795 | exon_skip_454626 | chr6:144827347-144827386 | -5.63 | -0.5630 | UTRN | ENST00000367545 | In-frame | ENSG00000231663 | ENST00000451795 | exon_skip_95407 | chr12:95040475-95040597 | -12.33 | -0.1054 | NR2C1 | ENST00000333003 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_382458 | chr3:38131595-38131638 | -8.38 | -0.2328 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_11029 | chr1:154989559-154989707 | -15.60 | -0.1091 | FLAD1 | ENST00000292180 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_16568 | chr1:201989382-201989531 | -15.28 | -0.1222 | RNPEP | ENST00000295640 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_41813 | chr10:68337857-68337996 | -13.90 | -0.1695 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_41841 | chr10:68756272-68756483 | -20.97 | -0.1104 | CCAR1 | ENST00000265872 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_52701 | chr10:97468965-97469104 | -15.52 | -0.1600 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_53559 | chr10:101793912-101793998 | -8.57 | -0.1318 | OGA | ENST00000361464 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_66482 | chr11:126274926-126275021 | -13.61 | -0.1791 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_74009 | chr11:64773429-64773505 | -12.73 | -0.1989 | SF1 | ENST00000377390 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_87733 | chr12:120571190-120571291 | -10.51 | -0.1118 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_92074 | chr12:50142052-50142110 | -5.25 | -0.1544 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_97655 | chr12:120579773-120579923 | -12.02 | -0.1202 | POP5 | ENST00000357500 | In-frame | ENSG00000231663 | ENST00000451795 | exon_skip_111746 | chr14:23347890-23347996 | -15.31 | -0.1531 | SLC22A17 | ENST00000397267 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_111863 | chr14:23565815-23565892 | -12.02 | -0.1821 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_114365 | chr14:74290026-74290118 | -12.73 | -0.1463 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_290158 | chr17:42953723-42953778 | -6.16 | -0.3850 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_300663 | chr19:1425877-1425960 | -11.81 | -0.2072 | DAZAP1 | ENST00000233078 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_313557 | chr19:5786748-5786845 | -12.80 | -0.1471 | DUS3L | ENST00000309061 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_319223 | chr19:43526200-43526349 | -21.79 | -0.1626 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_324294 | chr2:27774423-27774530 | -10.01 | -0.1564 | MRPL33 | ENST00000296102 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_326885 | chr2:74490024-74490127 | -16.43 | -0.1805 | TTC31 | ENST00000233623 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_333962 | chr2:219247112-219247246 | -13.92 | -0.1365 | STK16 | ENST00000396738,ENST00000409638 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_335558 | chr2:240596680-240596942 | -25.47 | -0.2158 | CAPN10 | ENST00000391984 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_353131 | chr20:58669290-58669453 | -25.83 | -0.1832 | STX16 | ENST00000371141 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_370518 | chr22:50247691-50247776 | -16.22 | -0.2192 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_370525 | chr22:50250426-50250523 | -15.40 | -0.2232 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_374497 | chr3:49999439-49999513 | -11.05 | -0.2009 | RBM6 | ENST00000266022 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_377198 | chr3:123130479-123130616 | -14.28 | -0.1058 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_384420 | chr3:49812647-49812738 | -11.88 | -0.1773 | UBA7 | ENST00000333486 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_441368 | chr5:32380074-32380172 | -15.71 | -0.2182 | ZFR | ENST00000265069 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_445390 | chr5:150403120-150403312 | -19.54 | -0.1206 | CD74 | ENST00000009530 | In-frame | ENSG00000231663 | ENST00000451795 | exon_skip_446758 | chr5:178212972-178213103 | -14.05 | -0.1106 | PHYKPL | ENST00000308158 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_462160 | chr6:127316449-127316502 | -6.50 | -1.6250 | ECHDC1 | ENST00000531967 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_466137 | chr7:48103296-48103411 | -13.35 | -0.1214 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_470226 | chr7:103307595-103307708 | -11.06 | -0.1164 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_476549 | chr7:76013741-76013887 | -15.94 | -0.1307 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_494079 | chr8:144099080-144099205 | -20.61 | -0.1732 | SHARPIN | ENST00000398712 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_511212 | chrX:71555189-71555385 | -13.92 | -0.1170 | OGT | ENST00000373719 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_343108 | chr2:127051153-127051243 | -16.23 | -0.1932 | BIN1 | ENST00000316724 | In-frame | ENSG00000231663 | ENST00000451795 | exon_skip_104545 | chr13:102767272-102767478 | -16.94 | -0.1765 | TEX30 | ENST00000376032 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_309977 | chr19:49667018-49667161 | -15.58 | -0.1309 | BCL2L12 | ENST00000246785 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_326741 | chr2:73946718-73946906 | -18.86 | -0.1241 | DGUOK | ENST00000264093 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_374581 | chr3:50110378-50110463 | -8.84 | -0.1426 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_389267 | chr3:146528613-146528831 | -22.67 | -0.1080 | PLSCR1 | ENST00000342435 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_501752 | chr9:136992924-136992974 | -10.27 | -0.3804 | PAXX | ENST00000371620 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_374375 | chr3:49675182-49675309 | -14.17 | -0.2402 | APEH | ENST00000296456 | Frame-shift | ENSG00000231663 | ENST00000451795 | exon_skip_356337 | chr20:35118597-35118719 | -15.30 | -0.1515 | EDEM2 | ENST00000374492 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000231663 | hsa-mir-22 | ENST00000451795 | chr1:234372999-234373074 | 168.00 | -68.51 | 81 | NA | ENSG00000231663 | hsa-mir-22 | ENST00000451795 | chr1:234372808-234372852 | 153.00 | -65.35 | 38 | NA | ENSG00000231663 | hsa-mir-22 | ENST00000451795 | chr1:234373156-234373241 | 148.00 | -77.11 | 83 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000231663 | ENSG00000064490 | RFXANK | ACC,BLCA,BRCA,CHOL,ESCA,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,MESO,PAAD,PCPG,PRAD,READ,TGCT,THCA,THYM,UCS | LIHC | | ENSG00000231663 | ENSG00000143590 | EFNA3 | ACC,CHOL,KIRC,KIRP,LIHC,READ,TGCT | LIHC | | ENSG00000231663 | ENSG00000217555 | CKLF | ACC,CESC,DLBC,GBM,HNSC,KICH,LGG,LIHC,MESO,TGCT,THYM | LIHC | | ENSG00000231663 | ENSG00000061938 | TNK2 | BLCA,BRCA,CHOL,LAML,LUSC,UVM | LUSC | | ENSG00000231663 | ENSG00000102125 | TAZ | BLCA,BRCA,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SKCM,TGCT,THCA,THYM,UCEC,UCS | LIHC | | ENSG00000231663 | ENSG00000108773 | KAT2A | BLCA,BRCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,SKCM,TGCT,THCA,THYM,UCEC | LIHC,LUSC | | ENSG00000231663 | ENSG00000143314 | MRPL24 | BLCA,BRCA,CESC,CHOL,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UCEC | LUSC | | ENSG00000231663 | ENSG00000143793 | C1orf35 | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | LIHC,LUSC | | ENSG00000231663 | ENSG00000152082 | MZT2B | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,LAML,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC,UCS | LUSC | | ENSG00000231663 | ENSG00000154040 | CABYR | BLCA,CESC,ESCA,HNSC,LUSC | LUSC | | ENSG00000231663 | ENSG00000157992 | KRTCAP3 | BLCA,CESC,CHOL,DLBC,HNSC,LUSC,OV,PRAD,UCS | LUSC | | ENSG00000231663 | ENSG00000160972 | PPP1R16A | BLCA,BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LGG,LIHC,PAAD,THCA,THYM | LIHC | | ENSG00000231663 | ENSG00000163463 | KRTCAP2 | BLCA,BRCA,CESC,CHOL,COAD,ESCA,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,LUAD,MESO,OV,PAAD,PCPG,PRAD,READ,STAD,TGCT,THCA,THYM,UCEC,UCS | LIHC | | ENSG00000231663 | ENSG00000166965 | RCCD1 | BLCA,CHOL,ESCA,HNSC,KIRC,KIRP,LUAD,LUSC,THCA | LUSC | | ENSG00000231663 | ENSG00000167393 | PPP2R3B | BLCA,BRCA,CHOL,ESCA,HNSC,KIRP,LGG,LUSC,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCEC | LUSC | | ENSG00000231663 | ENSG00000168096 | ANKS3 | BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,MESO,PAAD,PCPG,PRAD,READ,SKCM,TGCT,THCA,THYM,UCEC | LIHC | | ENSG00000231663 | ENSG00000168275 | COA6 | BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,HNSC,KICH,LGG,LIHC,LUAD,LUSC,OV,PCPG,PRAD,READ,STAD,TGCT,THCA,THYM,UCEC,UCS | LIHC,LUSC | | ENSG00000231663 | ENSG00000173272 | MZT2A | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KICH,LAML,LGG,LIHC,LUSC,MESO,PRAD,TGCT,THCA,THYM | LUSC | | ENSG00000231663 | ENSG00000182173 | TSEN54 | BLCA,BRCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUSC,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCS | LIHC | | ENSG00000231663 | ENSG00000184162 | NR2C2AP | BLCA,BRCA,CHOL,ESCA,HNSC,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PCPG,PRAD,READ,THYM,UVM | LUSC | | ENSG00000231663 | ENSG00000204220 | PFDN6 | BLCA,BRCA,CHOL,COAD,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,READ,TGCT,THCA,THYM,UCEC | LIHC | | ENSG00000231663 | ENSG00000239382 | ALKBH6 | BLCA,CESC,DLBC,LUSC,THYM | LUSC | | ENSG00000231663 | ENSG00000241343 | RPL36A | BLCA,BRCA,CHOL,DLBC,ESCA,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC,UCS,UVM | LIHC | | ENSG00000231663 | ENSG00000250067 | YJEFN3 | BLCA,CHOL,DLBC,KIRC,KIRP,LGG,LUSC,PAAD,PRAD,UCEC,UVM | LUSC | | ENSG00000231663 | ENSG00000273899 | NOL12 | BLCA,BRCA,CHOL,COAD,DLBC,HNSC,KICH,KIRC,KIRP,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,STAD,THCA,THYM,UCEC,UCS | LUSC | | ENSG00000231663 | ENSG00000071859 | FAM50A | BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,LAML,LGG,LIHC,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCEC | LIHC | | ENSG00000231663 | ENSG00000100908 | EMC9 | BRCA,CESC,CHOL,ESCA,HNSC,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,THCA,THYM | LUSC | | ENSG00000231663 | ENSG00000106268 | NUDT1 | BRCA,CESC,CHOL,ESCA,HNSC,KIRP,LGG,LIHC,READ,THYM,UCS | LIHC | | ENSG00000231663 | ENSG00000109065 | NAT9 | BRCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,PRAD,THCA,UCEC | LIHC | | ENSG00000231663 | ENSG00000111671 | SPSB2 | BRCA,CHOL,DLBC,ESCA,HNSC,LIHC,PCPG,PRAD,THCA | LIHC | | ENSG00000231663 | ENSG00000125835 | SNRPB | BRCA,CHOL,ESCA,HNSC,LAML,LIHC,LUSC,MESO,PRAD,THYM,UCS | LIHC,LUSC | | ENSG00000231663 | ENSG00000130005 | GAMT | BRCA,ESCA,HNSC,KICH,LGG,LUSC,MESO,PCPG,PRAD,THCA,THYM | LUSC | | ENSG00000231663 | ENSG00000163156 | SCNM1 | BRCA,CESC,CHOL,COAD,ESCA,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,MESO,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC,UCS | LIHC | | ENSG00000231663 | ENSG00000165948 | IFI27L1 | BRCA,CHOL,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,MESO,PCPG,PRAD,THCA,THYM | LIHC | | ENSG00000231663 | ENSG00000204536 | CCHCR1 | BRCA,CHOL,KICH,KIRP,LGG,LIHC,READ,TGCT,THYM,UCEC | LIHC | | ENSG00000231663 | ENSG00000087842 | PIR | CESC,ESCA,HNSC,LIHC,LUSC,MESO,PAAD | LUSC | | ENSG00000231663 | ENSG00000134202 | GSTM3 | CESC,DLBC,ESCA,HNSC,KICH,LUSC | LUSC | | ENSG00000231663 | ENSG00000134253 | TRIM45 | CESC,CHOL,HNSC,KICH,KIRP,LUSC,MESO,PCPG,UCEC,UVM | LUSC | | ENSG00000231663 | ENSG00000160124 | MIX23 | CESC,CHOL,COAD,ESCA,HNSC,KIRC,KIRP,LGG,LIHC,LUSC,PCPG,PRAD,THCA,THYM,UVM | LUSC | | ENSG00000231663 | ENSG00000161888 | SPC24 | CESC,CHOL,HNSC,KIRC,LGG,LUSC,MESO,READ,TGCT,THYM,UCS | LUSC | | ENSG00000231663 | ENSG00000168061 | SAC3D1 | CESC,CHOL,ESCA,HNSC,KICH,KIRP,LGG,LIHC,PAAD,THYM | LIHC | | ENSG00000231663 | ENSG00000181019 | NQO1 | CESC,CHOL,ESCA,HNSC,LUSC | LUSC | | ENSG00000231663 | ENSG00000189366 | ALG1L | CESC,CHOL,ESCA,HNSC,LUSC | LUSC | | ENSG00000231663 | ENSG00000205981 | DNAJC19 | CESC,ESCA,GBM,HNSC,KICH,LUSC,PAAD,SKCM,STAD,THCA,UCS,UVM | LUSC | | ENSG00000231663 | ENSG00000077152 | UBE2T | CHOL,ESCA,HNSC,KICH,LUSC,UCS | LUSC | | ENSG00000231663 | ENSG00000093009 | CDC45 | CHOL,ESCA,HNSC,LUSC,MESO | LUSC | | ENSG00000231663 | ENSG00000108641 | B9D1 | CHOL,ESCA,GBM,HNSC,KICH,KIRP,LIHC,MESO,OV,PAAD,PRAD,THCA | LIHC | | ENSG00000231663 | ENSG00000123136 | DDX39A | CHOL,ESCA,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,PCPG,PRAD,THCA,THYM | LIHC | | ENSG00000231663 | ENSG00000125459 | MSTO1 | CHOL,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PCPG,THYM,UCEC | LIHC | | ENSG00000231663 | ENSG00000126249 | PDCD2L | CHOL,HNSC,LUSC,PAAD,PRAD | LUSC | | ENSG00000231663 | ENSG00000130299 | GTPBP3 | CHOL,ESCA,HNSC,KIRC,KIRP,LUAD,LUSC,THCA,UVM | LUSC | | ENSG00000231663 | ENSG00000131351 | HAUS8 | CHOL,ESCA,HNSC,LUSC,THYM | LUSC | | ENSG00000231663 | ENSG00000132680 | KHDC4 | CHOL,HNSC,KICH,KIRC,KIRP,LUSC,STAD | LUSC | | ENSG00000231663 | ENSG00000136522 | MRPL47 | CHOL,ESCA,HNSC,LIHC,LUSC,MESO,PRAD,THCA,THYM,UCS | LUSC | | ENSG00000231663 | ENSG00000141570 | CBX8 | CHOL,HNSC,KICH,KIRC,LIHC,LUAD,PAAD,THCA | LIHC | | ENSG00000231663 | ENSG00000143633 | C1orf131 | CHOL,COAD,ESCA,HNSC,KICH,KIRC,LUSC,OV,STAD | LUSC | | ENSG00000231663 | ENSG00000160688 | FLAD1 | CHOL,ESCA,HNSC,KICH,KIRC,LGG,LIHC,LUSC,MESO,PRAD,THYM,UCS | LIHC,LUSC | | ENSG00000231663 | ENSG00000162062 | TEDC2 | CHOL,ESCA,HNSC,LUSC,MESO,THYM,UCS | LUSC | | ENSG00000231663 | ENSG00000163472 | TMEM79 | CHOL,KICH,KIRC,LGG,LIHC | LIHC | | ENSG00000231663 | ENSG00000163864 | NMNAT3 | CHOL,ESCA,GBM,HNSC,LUSC,PAAD,UVM | LUSC | | ENSG00000231663 | ENSG00000163918 | RFC4 | CHOL,ESCA,GBM,HNSC,KICH,LUSC,MESO,UVM | LUSC | | ENSG00000231663 | ENSG00000167747 | C19orf48 | CHOL,ESCA,HNSC,LIHC,PRAD,THCA,THYM,UCS | LIHC | | ENSG00000231663 | ENSG00000173207 | CKS1B | CHOL,ESCA,HNSC,KICH,LIHC,MESO | LIHC | | ENSG00000231663 | ENSG00000184160 | ADRA2C | CHOL,ESCA,HNSC,KICH,LIHC,PAAD,TGCT | LIHC | | ENSG00000231663 | ENSG00000196510 | ANAPC7 | CHOL,ESCA,HNSC,KICH,KIRC,LUSC,THCA | LUSC | | ENSG00000231663 | ENSG00000213903 | LTB4R | CHOL,DLBC,KIRC,KIRP,LUSC,PAAD,THCA,UCEC,UCS,UVM | LUSC | | ENSG00000231663 | ENSG00000243364 | EFNA4 | CHOL,HNSC,KICH,KIRC,KIRP,LIHC,TGCT,UCS | LIHC | | ENSG00000231663 | ENSG00000136521 | NDUFB5 | DLBC,ESCA,HNSC,LUSC,UVM | LUSC | | ENSG00000231663 | ENSG00000140905 | GCSH | ESCA,GBM,HNSC,LUSC,THCA | LUSC | | ENSG00000231663 | ENSG00000143502 | SUSD4 | ESCA,HNSC,KICH,LUSC,PAAD | LUSC | | ENSG00000231663 | ENSG00000163170 | BOLA3 | ESCA,HNSC,LIHC,LUSC,PAAD,PRAD,THCA,THYM | LUSC | | ENSG00000231663 | ENSG00000163964 | PIGX | ESCA,LUSC,MESO,UCS,UVM | LUSC | | ENSG00000231663 | ENSG00000115541 | HSPE1 | GBM,HNSC,LGG,LIHC,LUSC,UCS | LUSC | | ENSG00000231663 | ENSG00000184678 | H2BC21 | KICH,KIRC,LAML,LUSC,PAAD,READ,UCS | LUSC | |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000231663 | ENST00000451795 | SLC39A14 | ENSG00000104635 | ENST00000240095 | -0.1515 | 274 | - | LIHC | ENSG00000231663 | ENST00000451795 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.2356 | 245 | - | LUSC,LIHC | ENSG00000231663 | ENST00000451795 | ANTXR2 | ENSG00000163297 | ENST00000404191 | -0.6293 | 90 | - | LUSC,LIHC | ENSG00000231663 | ENST00000451795 | ANTXR2 | ENSG00000163297 | ENST00000346652 | -0.5640 | 244 | - | LUSC,LIHC | ENSG00000231663 | ENST00000451795 | PDLIM5 | ENSG00000163110 | ENST00000512274 | -0.1129 | 183 | - | LIHC | ENSG00000231663 | ENST00000451795 | PDLIM5 | ENSG00000163110 | ENST00000504489 | -0.1096 | 1 | - | LIHC | ENSG00000231663 | ENST00000451795 | PDLIM5 | ENSG00000163110 | ENST00000506632 | -0.1996 | 1 | - | LIHC |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000231663 | COA6-AS1,hsa-mir-22,C1orf35 | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,USP21 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,FUZ | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,RBM8A | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,NRF1 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,ILKAP | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,EHMT2 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,PHC1 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,IFT122 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,POLR2H | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,SALL2 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,BRAT1 | CHOL,MESO,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,ING5 | KICH,CHOL,MESO,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,CEP131 | CHOL,MESO,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,PRPF38A | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,GABBR1 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,STMN1 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,TSEN54 | KICH,CHOL,MESO,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,CRTC2 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,FBXO46 | KICH,CHOL,MESO,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,ATG4B | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,CCDC57 | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,COPS7B | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,INTS11 | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,RECQL5 | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,C14orf93 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,ENDOV | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,UBXN11 | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,FANCG | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,SSBP4 | KICH,CHOL,MESO,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,KDM5B | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,LIG1 | KICH,CHOL,MESO,UCS,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,SRRT | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,PMF1 | KICH,CHOL,UCS,PAAD,KIRP | ENSG00000231663 | COA6-AS1,hsa-mir-22,CCHCR1 | KICH,CHOL,MESO,UCS,KIRP |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000231663.1 | ENST00000451795.1 | 78 | 587 | 351 |
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