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lncRNA: ENSG00000231607

Summary for DLEU2

Gene summary

Gene information	Ensembl ID	ENSG00000231607
	Gene symbol	DLEU2
	Gene name	deleted in lymphocytic leukemia 2
	HGNC	13748
	Entrez ID	8847
	Gene type	antisense
	Synonyms	DLEU2\|13q14.2
	UniProtAcc

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Structure and expression level for DLEU2

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000231607	2.712842e+02	1.062720e+00	2.208539e-01	4.811869e+00	1.500000e-06	1.270000e-05	UP	BLCA
ENSG00000231607	4.275965e+02	2.108399e+00	5.021670e-01	4.198602e+00	2.690000e-05	4.062790e-04	UP	CESC
ENSG00000231607	6.460337e+02	1.338625e+00	2.384344e-01	5.614230e+00	1.970000e-08	9.760000e-07	UP	ESCA
ENSG00000231607	3.041153e+02	1.112106e+00	1.188042e-01	9.360835e+00	7.910000e-21	5.400000e-20	UP	LUSC
ENSG00000231607	2.427403e+02	1.041176e+00	1.434593e-01	7.257642e+00	3.940000e-13	2.390000e-12	UP	LUAD
ENSG00000231607	1.837504e+02	1.659743e+00	2.032932e-01	8.164282e+00	3.230000e-16	3.240000e-15	UP	COAD
ENSG00000231607	4.651610e+02	1.510667e+00	1.670468e-01	9.043379e+00	1.520000e-19	9.740000e-18	UP	STAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000231607	3.118326e-01	8.715522e-05	ESCA	2.279444e-03

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lncRNA-Protein interaction for DLEU2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000164190	NIPBL	111.66	97.5925	Q6KC79	Epi	ChIP-seq
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000145241	CENPC	103.65	93.4621	Q03188	Epi	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000012048	BRCA1	82.67	96.1121	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000139618	BRCA2	76.28	92.2928	P51587	Epi	NA
ENSG00000231607	ENST00000433070	DLEU2	ENSG00000171988	JMJD1C	74.94	94.1228	Q15652	Epi	NA
ENSG00000231607	ENST00000433070	DLEU2	ENSG00000012048	BRCA1	73.31	92.3868	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000116560	SFPQ	68.54	91.7308	P23246	RBP,Epi	GSE96080,eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000164190	NIPBL	67.9	91.5011	Q6KC79	Epi	ChIP-seq
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000123485	HJURP	66.99	90.4419	Q8NCD3	Epi	NA
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000171988	JMJD1C	66.81	94.079	Q15652	Epi	NA
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000171988	JMJD1C	66.4	92.7608	Q15652	Epi	NA
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000012048	BRCA1	65.66	90.6971	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000012048	BRCA1	65.46	95.283	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000171988	JMJD1C	65.44	92.8935	Q15652	Epi	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000071794	HLTF	62.4	90.6944	Q14527	Epi	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000012048	BRCA1	60.38	95.3497	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000433070	DLEU2	ENSG00000139618	BRCA2	60.07	90.7187	P51587	Epi	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000171988	JMJD1C	59.8	94.4336	Q15652	Epi	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000164190	NIPBL	58.24	95.8475	Q6KC79	Epi	ChIP-seq
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000123485	HJURP	57.21	90.7719	Q8NCD3	Epi	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000164190	NIPBL	54.82	94.3048	Q6KC79	Epi	ChIP-seq
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000177565	TBL1XR1	51.47	92.0969	Q9BZK7	Epi	ChIP-seq
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000116560	SFPQ	38.76	90.2252	P23246	RBP,Epi	GSE96080,eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000116560	SFPQ	35.31	91.0625	P23246	RBP,Epi	GSE96080,eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000127483	HP1BP3	27.75	94.8807	Q5SSJ5	Epi	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000189403	HMGB1	26.3	91.0173	P09429	Epi	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000163605	PPP4R2	24.98	92.2374	Q9NY27	Epi	Predict
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000135341	MAP3K7	21.42	91.3927	O43318	Epi	NA
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000115966	ATF2	7.45	90.6277	P15336	TF,Epi	ChIP-seq
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000146247	PHIP	107.78	92.3679	Q8WWQ0	Epi	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000146247	PHIP	93.94	93.7676	Q8WWQ0	Epi	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000146247	PHIP	87.84	91.69	Q8WWQ0	Epi	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000083544	TDRD3	60.4	93.6491	Q9H7E2	RBP,Epi	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000143401	ANP32E	57.39	93.197	Q9BTT0	Epi	Predict
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000156374	PCGF6	42.49	92.674	Q9BYE7	TF,Epi	Predict
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000083544	TDRD3	23.97	91.2127	Q9H7E2	RBP,Epi	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000083544	TDRD3	23.63	92.1187	Q9H7E2	RBP,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000181827	RFX7	96.78	95.7579	Q2KHR2	TF	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000167232	ZNF91	84.14	96.0503	Q05481	TF	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000181827	RFX7	73.7	93.144	Q2KHR2	TF	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000181827	RFX7	67.55	92.5371	Q2KHR2	TF	NA
ENSG00000231607	ENST00000433070	DLEU2	ENSG00000167232	ZNF91	65.09	91.3499	Q05481	TF	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000118260	CREB1	61.47	90.2591	P16220	TF	ChIP-seq
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000164631	ZNF12	60.5	92.1566	P17014	TF	ChIP-seq
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000167232	ZNF91	58.22	94.2065	Q05481	TF	NA
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000167232	ZNF91	56.57	93.5317	Q05481	TF	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000167232	ZNF91	53.66	94.8715	Q05481	TF	NA
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000236287	ZBED5	50.01	91.9002	Q49AG3	TF	NA
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000236287	ZBED5	48.45	93.2053	Q49AG3	TF	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000167232	ZNF91	47.74	94.5987	Q05481	TF	NA
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000156374	PCGF6	42.49	92.6631	Q9BYE7	TF,Epi	Predict
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000164631	ZNF12	26.67	90.7157	P17014	TF	ChIP-seq
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000146757	ZNF92	16.18	93.5878	Q03936	TF	NA
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000144161	ZC3H8	11.29	91.7792	Q8N5P1	TF,RBP	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000095574	IKZF5	9.32	90.2051	Q9H5V7	TF	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000146757	ZNF92	7.94	91.9835	Q03936	TF	NA
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000115966	ATF2	7.45	91.6465	P15336	TF,Epi	ChIP-seq
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000146757	ZNF92	6.42	91.454	Q03936	TF	NA
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000146757	ZNF92	6.3	91.015	Q03936	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000231607	ENST00000449579	DLEU2	ENSG00000091009	RBM27	88.98	92.5932	Q9P2N5	RBP	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000012048	BRCA1	82.67	95.8891	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000124193	SRSF6	77.99	91.2019	Q13247	RBP	NA
ENSG00000231607	ENST00000433070	DLEU2	ENSG00000091009	RBM27	77.28	91.8588	Q9P2N5	RBP	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000161813	LARP4	76.72	93.7164	Q71RC2	RBP	eCLIP
ENSG00000231607	ENST00000433070	DLEU2	ENSG00000139746	RBM26	74.04	93.1273	Q5T8P6	RBP	NA
ENSG00000231607	ENST00000433070	DLEU2	ENSG00000012048	BRCA1	73.31	91.7031	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000091009	RBM27	69.46	95.1075	Q9P2N5	RBP	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000116560	SFPQ	68.54	90.3788	P23246	RBP,Epi	GSE96080,eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000091009	RBM27	68.09	96.7965	Q9P2N5	RBP	NA
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000139746	RBM26	66.47	92.9923	Q5T8P6	RBP	NA
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000012048	BRCA1	65.66	94.4279	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000012048	BRCA1	65.46	95.342	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000121390	PSPC1	65.34	91.9809	Q8WXF1	RBP	NA
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000139746	RBM26	65.27	97.0259	Q5T8P6	RBP	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000083544	TDRD3	60.4	93.5304	Q9H7E2	RBP,Epi	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000012048	BRCA1	60.38	95.5667	P38398	RBP,Epi	Predict
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000139746	RBM26	59.7	91.2487	Q5T8P6	RBP	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000100201	DDX17	46.91	90.9292	Q92841	RBP	Predict
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000147274	RBMX	45.34	93.1443	P38159	RBP	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000115875	SRSF7	42.69	92.7362	Q16629	RBP	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000145907	G3BP1	42.35	93.1058	Q13283	RBP	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000244462	RBM12	39.12	90.7864	Q9NTZ6	RBP	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000116560	SFPQ	38.76	90.6234	P23246	RBP,Epi	GSE96080,eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000124193	SRSF6	37.57	94.9118	Q13247	RBP	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000116560	SFPQ	35.31	91.1444	P23246	RBP,Epi	GSE96080,eCLIP,Scan,pipeline,widely,used,MATCH,algorithm
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000083544	TDRD3	29.46	90.5781	Q9H7E2	RBP,Epi	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000124193	SRSF6	26.59	91.5571	Q13247	RBP	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000162613	FUBP1	25.68	90.3389	Q96AE4	RBP	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000145907	G3BP1	24.12	91.6282	Q13283	RBP	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000083544	TDRD3	23.97	90.636	Q9H7E2	RBP,Epi	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000145907	G3BP1	23.89	91.6565	Q13283	RBP	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000083544	TDRD3	23.63	91.084	Q9H7E2	RBP,Epi	NA
ENSG00000231607	ENST00000621282	DLEU2	ENSG00000161547	SRSF2	20.85	93.2548	Q01130	RBP	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000124193	SRSF6	19.51	92.0559	Q13247	RBP	NA
ENSG00000231607	ENST00000443587	DLEU2	ENSG00000124193	SRSF6	17.78	93.1259	Q13247	RBP	NA
ENSG00000231607	ENST00000235290	DLEU2	ENSG00000121390	PSPC1	12.95	92.7018	Q8WXF1	RBP	NA
ENSG00000231607	ENST00000458725	DLEU2	ENSG00000121390	PSPC1	11.96	92.0695	Q8WXF1	RBP	NA
ENSG00000231607	ENST00000425586	DLEU2	ENSG00000144161	ZC3H8	11.29	91.5959	Q8N5P1	TF,RBP	NA

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lncRNA-DNA interaction for DLEU2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

SKA2,FAM126B,SKA3,TTF2,RCBTB1,FANCL,NCAPG,MOB1A,RBM39,TRMU,ODF2L,TMX3,NUP43,TADA1,PARPBP,CENPK,KIF18A,ZCCHC8,WBP4,CEP57,N4BP2,TBL1XR1,NRF1,MED13L,CNOT9,GXYLT1,NEMP2,ARID2,GNA13,ASPM,PIF1,PPWD1,DMTF1,N4BP2L2,NEK3,TAF1D,PRPF40A,SLC30A7,SASS6,RBM27,HLTF,PIBF1,MTFR2,FASTKD1,NDUFAF6,BRIP1,NHLRC3,ICE2,GPATCH2,TASP1,CRLF3,IKZF5,DDX55,SUGT1,HJURP,PBRM1,PAK2,FRA10AC1,CIP2A,TICRR,CKAP2,VMP1,POLE2,MARCHF7,CENATAC,FAM111A,METTL21A,BARD1,OBI1,MSANTD2,THOC1,PAN3,CCDC14,NUP58,CEP350,LRCH3,NUSAP1,CLASP2,CHTOP,PCLAF,LBR,UBE2T,CCSAP,FAM133B,DEK,TTK,ZBED5,ZMYM5,FBXO22,RABGGTB,RECQL4,CHORDC1,KNTC1,MPHOSPH9,AP5M1,SCLT1,OSBPL8,KNSTRN,CCNT2,CREB1,SNRNP48,MZT1,TRIM59,XPO4,FAM76B,NEK2,BORA,TRIM13,ZNF91,ADAM10,GIT2,RBMX,CCDC138,SMAD2,EXOG,MRPS31,RBM26,XRCC2,C21orf58,RB1,ATP13A3,ORC4,PPM1B,TEFM,PUS7L,RO60,POLG2,FBXO5,FUBP1,MTBP,IFT80,RNASEH2B,CEP152,SPRTN,CEP83,ANAPC10,HMGB1,RPAP3,RFC4,BBIP1,LIN54,AURKB,LIN9,LNPEP,BLM,KIAA0586,PRPF39,HMGB2,OTULIN,ETNK1,GABPB1,KIF14,PRC1,ABHD18,DDX17,VPS36,INTS6,BRCA2,ACYP1,KIF20B,RFX7,ARHGAP11A,RSBN1L,MTRF1,HELLS,VTI1A,ASF1B,MIER1,ZC3H8,MAP3K7,CTDSPL2,RSRC2,CENPC,CAMKMT,NAPB,TDG,MCM8,C4orf46,POLQ,SMC6,TRAPPC8,PAXBP1,CCNL1,SLC38A9,GANC,GPALPP1,KPNA3,MIS18BP1,CDC25C,TRAIP,SOCS4,C16orf87,CENPA,RACGAP1,GTF2A1,ZDHHC20,PHIP,WDR76,ORMDL1,CELF1,PHF11,TOPBP1,PSPC1,LRR1,RBM45,NSD2,DNA2,DONSON,RBL1,AURKA,ORC2,PMS1,GPR180,NVL,ATAD2,PWWP2A,SRSF2,UCHL5,TTC32,WDR36,RPE,TIA1,TUBGCP3,UBE2C,DEPDC1,SUPT20H,TMPO,RSRC1,HP1BP3,USP33,C5orf34,KIF23,RMND5A,SCAF11,PRR11,FIGNL1,PUS10,CDK2,MAD2L1,MKI67,BUB3,TASOR,KIFC1,R3HDM1,MRE11,PPP4R2,NDUFAF7,GK5,DEPDC1B,TRMT13,GTSE1,GDAP2,PDS5B,DUSP28,CCDC82,XPO1,BRCA1,USP3,CDCA7,ZFC3H1,SPC25,LUC7L,KIF18B,MBTD1,DIAPH3,CENPI,CENPE,CENPL,RAD18,ESD,CBX5,SP3,ANP32E,LUC7L2,AP4E1,CCAR1,CENPJ,CHD1,TEX30,TRA2A,WDR33,KIF15,MAPKAPK5,ORC6,TPP2,TRA2B,PGGT1B,KHDC4,NANP,JMJD1C,SHOC2,EP400P1,SLF1,PCGF6,GEN1,LRRC40,SFPQ,USPL1,CEPT1,SUCLA2,CDCA3,PRPF4B,ATF2,BUB1,ATAD2B,SRSF7

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

FAM76B,RBM27,CHD1,ITGB3BP,ALG6,XPO1,RFX7,CEP57,MED13L,XPO4,CKAP2,ORC2,ORC4,RBMX,MBTD1,CBFB,C16orf87,GINS1,RSBN1L,STX16,RNF219,CDK1,CCDC138,EP400NL,YAF2,MRPS31,CBL,NCAPH,MOB1A,SPDL1,GTF2F2,CENPE,PPHLN1,FAM133B,RIF1,CELF1,ARID2,MED4,TMA16,GAS2L3,TUBGCP3,HMGB1,TBL1XR1,CCDC82,FAM208A,METTL21A,RNASEH2B,PAXBP1,HMGB2,KIAA0907,CTDSPL2,PPIG,MPHOSPH9,SASS6,BBIP1,CEP55,BUB1B,N4BP2,NUDT15,UBE2T,NEK2,GIT2,MRPL42,MKI67,TAF5,TMPO,NRF1,FAM111A,RSRC1,ICE2,CCNL1,TPP2,GPR180,USP3,OSBPL8,KNTC1,TICRR,VPS36,TMX3,WDR43,SENP5,CDCA3,RSRC2,PAN3,GANC,RB1,BRCA1,RBM39,SMC3,MDM4,GNA13

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for DLEU2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PINK1,RNH1,NUCB1,SPRYD3,UBXN6

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for DLEU2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_275440	ENSG00000231607.7	chr13	49986660	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275441	ENSG00000231607.7	chr13	49986661	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275443	ENSG00000231607.7	chr13	49986673	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275535	ENSG00000231607.7	chr13	49991331	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275536	ENSG00000231607.7	chr13	49991337	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275552	ENSG00000231607.7	chr13	49994768	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275553	ENSG00000231607.7	chr13	49994780	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275556	ENSG00000231607.7	chr13	49994790	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275557	ENSG00000231607.7	chr13	49994807	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275566	ENSG00000231607.7	chr13	49994900	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275581	ENSG00000231607.7	chr13	49995016	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275679	ENSG00000231607.7	chr13	50023776	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275702	ENSG00000231607.7	chr13	50024431	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275885	ENSG00000231607.7	chr13	50038460	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275889	ENSG00000231607.7	chr13	50038501	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275891	ENSG00000231607.7	chr13	50038505	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275893	ENSG00000231607.7	chr13	50038507	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275905	ENSG00000231607.7	chr13	50038567	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275907	ENSG00000231607.7	chr13	50038569	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275909	ENSG00000231607.7	chr13	50038572	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275923	ENSG00000231607.7	chr13	50039091	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275957	ENSG00000231607.7	chr13	50039183	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275959	ENSG00000231607.7	chr13	50039184	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_275979	ENSG00000231607.7	chr13	50039258	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_276041	ENSG00000231607.7	chr13	50039904	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_276043	ENSG00000231607.7	chr13	50039910	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_276245	ENSG00000231607.7	chr13	50047394	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_276269	ENSG00000231607.7	chr13	50047423	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_276287	ENSG00000231607.7	chr13	50047454	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_276631	ENSG00000231607.7	chr13	50050650	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_277015	ENSG00000231607.7	chr13	50065553	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_277023	ENSG00000231607.7	chr13	50065564	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_277039	ENSG00000231607.7	chr13	50065569	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_277055	ENSG00000231607.7	chr13	50065578	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010
LncEditing_277095	ENSG00000231607.7	chr13	50065631	-	antisense	DLEU2	ENST00000621282.3	antisense	DLEU2-010

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000231607	LncEditing_275535	LAML	chr13_49991331_-	8.558220e+00	6.136914e+00	2.084213e+00	3.283874e+00	1.023907e-03	1.325497e-03	UP
ENSG00000231607	LncEditing_275536	LAML	chr13_49991337_-	8.746465e+00	5.737885e+00	1.644247e+00	4.403626e+00	1.064562e-05	2.016464e-05	UP
ENSG00000231607	LncEditing_275702	LAML	chr13_50024431_-	1.116940e+01	5.994489e+00	1.113781e+00	5.200127e+00	1.991520e-07	5.277956e-07	UP
ENSG00000231607	LncEditing_275885	LAML	chr13_50038460_-	1.045117e+01	6.042688e+00	1.265179e+00	4.826317e+00	1.390811e-06	3.151655e-06	UP
ENSG00000231607	LncEditing_275889	LAML	chr13_50038501_-	8.548496e+00	6.465925e+00	2.482537e+00	2.578417e+00	9.925424e-03	1.095433e-02	UP
ENSG00000231607	LncEditing_275891	LAML	chr13_50038505_-	8.754763e+00	6.289737e+00	2.096135e+00	3.854197e+00	1.161101e-04	1.805995e-04	UP
ENSG00000231607	LncEditing_275893	LAML	chr13_50038507_-	9.833978e+00	6.370083e+00	1.596264e+00	3.695219e+00	2.196973e-04	3.237782e-04	UP
ENSG00000231607	LncEditing_275905	LAML	chr13_50038567_-	9.228982e+00	6.010886e+00	1.616570e+00	4.673779e+00	2.957070e-06	6.285682e-06	UP
ENSG00000231607	LncEditing_275907	LAML	chr13_50038569_-	8.693580e+00	6.000881e+00	1.869941e+00	4.284213e+00	1.833872e-05	3.291907e-05	UP
ENSG00000231607	LncEditing_275909	LAML	chr13_50038572_-	9.564143e+00	6.121386e+00	1.553332e+00	4.455491e+00	8.370137e-06	1.627893e-05	UP
ENSG00000231607	LncEditing_276245	LAML	chr13_50047394_-	9.413629e+00	6.325622e+00	1.743546e+00	3.585138e+00	3.368995e-04	4.749668e-04	UP
ENSG00000231607	LncEditing_276631	LAML	chr13_50050650_-	1.107928e+01	6.232734e+00	1.204926e+00	3.956497e+00	7.605678e-05	1.223049e-04	UP
ENSG00000231607	LncEditing_275566	THYM	chr13_49994900_-	5.310349e+00	2.809797e+00	1.088921e+00	3.779976e+00	1.568437e-04	2.607647e-04	UP
ENSG00000231607	LncEditing_275679	THYM	chr13_50023776_-	4.315018e+00	2.702090e+00	1.480843e+00	3.431246e+00	6.008162e-04	8.873090e-04	UP
ENSG00000231607	LncEditing_275536	OV	chr13_49991337_-	1.718986e+00	1.124478e+00	1.633180e+00	4.159154e+00	3.194287e-05	3.799672e-05	UP
ENSG00000231607	LncEditing_275552	OV	chr13_49994768_-	1.574877e+00	1.128329e+00	2.078781e+00	4.403120e+00	1.067050e-05	1.302991e-05	UP
ENSG00000231607	LncEditing_275553	OV	chr13_49994780_-	1.721758e+00	1.109821e+00	1.578394e+00	5.307793e+00	1.109608e-07	1.547057e-07	UP
ENSG00000231607	LncEditing_275556	OV	chr13_49994790_-	1.698321e+00	1.112988e+00	1.640229e+00	5.047600e+00	4.473955e-07	5.991551e-07	UP
ENSG00000231607	LncEditing_275581	OV	chr13_49995016_-	1.458795e+00	1.134649e+00	2.758384e+00	3.742086e+00	1.824991e-04	2.060256e-04	UP
ENSG00000231607	LncEditing_275957	OV	chr13_50039183_-	1.729402e+00	1.075401e+00	1.459005e+00	4.905761e+00	9.306566e-07	1.221611e-06	UP
ENSG00000231607	LncEditing_275979	OV	chr13_50039258_-	1.717434e+00	1.121149e+00	1.625286e+00	3.522950e+00	4.267713e-04	4.736466e-04	UP
ENSG00000231607	LncEditing_277015	OV	chr13_50065553_-	1.746913e+00	1.121448e+00	1.563857e+00	4.507664e+00	6.554520e-06	8.095206e-06	UP
ENSG00000231607	LncEditing_277023	OV	chr13_50065564_-	1.724588e+00	1.113111e+00	1.583146e+00	4.489955e+00	7.123830e-06	8.780646e-06	UP
ENSG00000231607	LncEditing_277039	OV	chr13_50065569_-	1.625341e+00	1.130284e+00	1.908188e+00	3.812031e+00	1.378297e-04	1.569466e-04	UP
ENSG00000231607	LncEditing_275441	STAD	chr13_49986661_-	2.161328e+00	1.510835e+00	1.935839e+00	3.418671e+00	6.292780e-04	6.837072e-04	UP
ENSG00000231607	LncEditing_275536	STAD	chr13_49991337_-	2.593900e+00	1.476113e+00	1.229529e+00	3.928059e+00	8.563430e-05	9.747879e-05	UP
ENSG00000231607	LncEditing_275957	STAD	chr13_50039183_-	2.404948e+00	1.343208e+00	1.190019e+00	5.706056e+00	1.156240e-08	1.642595e-08	UP
ENSG00000231607	LncEditing_275959	STAD	chr13_50039184_-	2.264876e+00	1.505261e+00	1.696587e+00	3.595908e+00	3.232627e-04	3.566349e-04	UP
ENSG00000231607	LncEditing_275979	STAD	chr13_50039258_-	2.174983e+00	1.449127e+00	1.707009e+00	4.662352e+00	3.126160e-06	3.829479e-06	UP
ENSG00000231607	LncEditing_276245	STAD	chr13_50047394_-	2.596419e+00	1.377904e+00	1.094035e+00	6.277347e+00	3.443984e-10	5.528908e-10	UP
ENSG00000231607	LncEditing_276269	STAD	chr13_50047423_-	2.669490e+00	1.391254e+00	1.063628e+00	6.180691e+00	6.382157e-10	1.003211e-09	UP
ENSG00000231607	LncEditing_276287	STAD	chr13_50047454_-	2.215095e+00	1.505294e+00	1.794291e+00	5.097145e+00	3.448150e-07	4.412646e-07	UP
ENSG00000231607	LncEditing_277055	STAD	chr13_50065578_-	2.047719e+00	1.480415e+00	2.136680e+00	2.544842e+00	1.093271e-02	1.124687e-02	UP
ENSG00000231607	LncEditing_277095	STAD	chr13_50065631_-	1.940730e+00	1.475827e+00	2.531163e+00	3.219578e+00	1.283793e-03	1.375013e-03	UP
ENSG00000231607	LncEditing_275440	ESCA	chr13_49986660_-	2.716061e+00	1.732461e+00	1.541562e+00	2.936041e+00	3.324306e-03	3.646125e-03	UP
ENSG00000231607	LncEditing_275441	ESCA	chr13_49986661_-	2.535332e+00	1.741391e+00	1.845243e+00	2.387577e+00	1.695986e-02	1.755450e-02	UP
ENSG00000231607	LncEditing_275443	ESCA	chr13_49986673_-	2.562827e+00	1.749254e+00	1.814895e+00	2.262379e+00	2.367397e-02	2.426437e-02	UP
ENSG00000231607	LncEditing_275536	ESCA	chr13_49991337_-	2.241316e+00	1.750898e+00	2.807012e+00	2.468527e+00	1.356703e-02	1.414750e-02	UP
ENSG00000231607	LncEditing_275553	ESCA	chr13_49994780_-	2.323113e+00	1.756106e+00	2.477215e+00	2.680131e+00	7.359327e-03	7.853945e-03	UP
ENSG00000231607	LncEditing_275556	ESCA	chr13_49994790_-	2.425913e+00	1.740796e+00	2.088636e+00	2.779857e+00	5.438281e-03	5.851456e-03	UP
ENSG00000231607	LncEditing_275557	ESCA	chr13_49994807_-	2.545710e+00	1.745650e+00	1.837211e+00	2.636852e+00	8.367945e-03	8.885113e-03	UP
ENSG00000231607	LncEditing_275566	ESCA	chr13_49994900_-	2.237526e+00	1.765506e+00	2.925490e+00	2.488509e+00	1.282799e-02	1.341690e-02	UP
ENSG00000231607	LncEditing_275581	ESCA	chr13_49995016_-	2.188727e+00	1.737739e+00	3.004080e+00	2.422372e+00	1.541954e-02	1.603938e-02	UP
ENSG00000231607	LncEditing_275905	ESCA	chr13_50038567_-	2.839628e+00	1.718920e+00	1.380835e+00	2.936041e+00	3.324306e-03	3.646125e-03	UP
ENSG00000231607	LncEditing_275907	ESCA	chr13_50038569_-	2.749889e+00	1.692544e+00	1.428204e+00	3.059090e+00	2.220108e-03	2.472554e-03	UP
ENSG00000231607	LncEditing_275923	ESCA	chr13_50039091_-	2.190135e+00	1.772953e+00	3.280132e+00	2.156056e+00	3.107929e-02	3.159175e-02	UP
ENSG00000231607	LncEditing_275957	ESCA	chr13_50039183_-	2.444363e+00	1.504830e+00	1.428862e+00	5.440995e+00	5.298368e-08	1.029229e-07	UP
ENSG00000231607	LncEditing_275959	ESCA	chr13_50039184_-	2.693506e+00	1.656827e+00	1.426407e+00	3.853738e+00	1.163281e-04	1.448744e-04	UP
ENSG00000231607	LncEditing_275979	ESCA	chr13_50039258_-	2.485947e+00	1.642082e+00	1.671487e+00	4.588640e+00	4.461423e-06	6.585311e-06	UP
ENSG00000231607	LncEditing_276041	ESCA	chr13_50039904_-	2.685927e+00	1.708999e+00	1.533110e+00	3.477430e+00	5.062459e-04	5.937836e-04	UP
ENSG00000231607	LncEditing_276043	ESCA	chr13_50039910_-	2.457348e+00	1.746201e+00	2.028882e+00	2.803094e+00	5.061487e-03	5.454435e-03	UP
ENSG00000231607	LncEditing_276245	ESCA	chr13_50047394_-	2.487755e+00	1.591789e+00	1.552325e+00	4.834248e+00	1.336497e-06	2.114603e-06	UP
ENSG00000231607	LncEditing_276269	ESCA	chr13_50047423_-	2.468448e+00	1.640510e+00	1.696468e+00	4.255022e+00	2.090284e-05	2.821144e-05	UP
ENSG00000231607	LncEditing_276287	ESCA	chr13_50047454_-	2.821274e+00	1.657143e+00	1.302680e+00	4.054620e+00	5.021597e-05	6.525274e-05	UP
ENSG00000231607	LncEditing_277015	ESCA	chr13_50065553_-	2.129149e+00	1.703484e+00	3.107632e+00	2.138417e+00	3.248294e-02	3.298655e-02	UP
ENSG00000231607	LncEditing_277023	ESCA	chr13_50065564_-	2.035748e+00	1.729373e+00	4.249722e+00	2.093696e+00	3.628706e-02	3.674284e-02	UP
ENSG00000231607	LncEditing_277095	ESCA	chr13_50065631_-	2.154407e+00	1.658015e+00	2.646666e+00	2.813822e+00	4.895630e-03	5.281132e-03	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000231607	LncEditing_275679	-5.106989e-01	9.089880e-03	1.887665e-02
ENSG00000231607	LncEditing_275959	-3.382395e-01	2.652288e-02	2.778213e-02
ENSG00000231607	LncEditing_275957	3.129316e-01	1.886123e-02	2.823363e-02
ENSG00000231607	LncEditing_275893	-5.188434e-01	4.750620e-02	4.850986e-02

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID	LncRNA Name	SNP info	Number of Positive corelated Cancer	Positive corelated Cancer	Number of Negative corelated Cancer	Negative corelated Cancer
ENSG00000231607	DLEU2	rs9568165:49751464:A:G:+	0		1	SARC
ENSG00000231607	DLEU2	rs17073967:50777358:A:G:-	0		1	SARC

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000231607	ENSG00000051341	POLQ	BLCA,COAD,DLBC,ESCA,LAML,LUSC,OV,STAD,THYM	BLCA,COAD,ESCA,LUSC,STAD
ENSG00000231607	ENSG00000062716	VMP1	BLCA,COAD,LUAD,LUSC,UCS	LUAD
ENSG00000231607	ENSG00000066279	ASPM	BLCA,COAD,DLBC,ESCA,LAML,LUAD,LUSC,OV,STAD,THYM	BLCA,COAD,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000102384	CENPI	BLCA,COAD,ESCA,LAML,LUAD,STAD,THYM	BLCA,COAD,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000103995	CEP152	BLCA,COAD,DLBC,ESCA,LAML,LUSC,STAD,THYM	BLCA,LUSC
ENSG00000231607	ENSG00000116830	TTF2	BLCA,COAD,ESCA,LUAD,THYM	ESCA
ENSG00000231607	ENSG00000118193	KIF14	BLCA,COAD,DLBC,ESCA,LAML,LUAD,LUSC,OV,STAD,THYM	BLCA,COAD,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000119969	HELLS	BLCA,COAD,DLBC,ESCA,STAD,THYM	BLCA,COAD,ESCA,STAD
ENSG00000231607	ENSG00000120662	MTRF1	BLCA,CESC,COAD,DLBC,LUAD,LUSC,OV,STAD,THYM	CESC
ENSG00000231607	ENSG00000122417	ODF2L	BLCA,COAD,ESCA,LUAD,THYM	ESCA
ENSG00000231607	ENSG00000125885	MCM8	BLCA,COAD,DLBC,ESCA,LUSC,STAD,THYM	COAD,ESCA,LUSC,STAD
ENSG00000231607	ENSG00000132953	XPO4	BLCA,COAD,DLBC,ESCA,LAML,LUAD	COAD
ENSG00000231607	ENSG00000133657	ATP13A3	BLCA,COAD,ESCA,LAML,LUAD,STAD	STAD
ENSG00000231607	ENSG00000136108	CKAP2	BLCA,CESC,COAD,DLBC,ESCA,LAML,LUSC,OV,STAD,THYM,UCS	BLCA,CESC,COAD,ESCA,LUSC,STAD
ENSG00000231607	ENSG00000136144	RCBTB1	BLCA,COAD,DLBC,ESCA,LUAD,OV,STAD	COAD
ENSG00000231607	ENSG00000138182	KIF20B	BLCA,COAD,DLBC,ESCA,LAML,OV,STAD,THYM,UCS	BLCA,COAD,ESCA,STAD
ENSG00000231607	ENSG00000138346	DNA2	BLCA,COAD,DLBC,ESCA,LAML,OV,STAD,THYM	BLCA,COAD,ESCA,STAD
ENSG00000231607	ENSG00000138778	CENPE	BLCA,COAD,ESCA,LAML,LUAD,THYM	BLCA,COAD,ESCA,LUAD
ENSG00000231607	ENSG00000139496	NUP58	BLCA,COAD,DLBC,ESCA,LAML,LUAD,STAD,THYM	COAD
ENSG00000231607	ENSG00000139618	BRCA2	BLCA,COAD,DLBC,ESCA,LAML,STAD,THYM	BLCA,COAD,ESCA,STAD
ENSG00000231607	ENSG00000140534	TICRR	BLCA,DLBC,ESCA,OV,STAD,THYM	BLCA,ESCA,STAD
ENSG00000231607	ENSG00000151849	CENPJ	BLCA,COAD,DLBC,ESCA,LUAD,LUSC,OV,STAD,THYM	COAD,ESCA,LUSC
ENSG00000231607	ENSG00000152520	PAN3	BLCA,COAD,DLBC,ESCA,LAML,LUAD,STAD,THYM	COAD
ENSG00000231607	ENSG00000154429	CCSAP	BLCA,COAD,ESCA,LAML,LUAD,LUSC,OV,THYM	BLCA,COAD
ENSG00000231607	ENSG00000156876	SASS6	BLCA,COAD,DLBC,ESCA,LAML,LUAD,LUSC,OV,STAD,THYM	BLCA,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000166012	TAF1D	BLCA,COAD,DLBC,LUAD,STAD,THYM	COAD,LUAD
ENSG00000231607	ENSG00000175455	CCDC14	BLCA,COAD,DLBC,ESCA,LUAD,STAD,THYM	BLCA,STAD
ENSG00000231607	ENSG00000178295	GEN1	BLCA,COAD,DLBC,ESCA,LAML,LUAD,STAD,THYM	BLCA,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000184445	KNTC1	BLCA,COAD,DLBC,ESCA,LUAD,LUSC,OV,STAD,THYM	BLCA,COAD,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000185480	PARPBP	BLCA,COAD,DLBC,ESCA,LAML,STAD,THYM	BLCA,COAD,ESCA,STAD
ENSG00000231607	ENSG00000198826	ARHGAP11A	BLCA,COAD,DLBC,ESCA,LAML,OV,STAD,THYM,UCS	BLCA,ESCA,STAD
ENSG00000231607	ENSG00000256525	POLG2	BLCA,COAD,DLBC,ESCA,LUAD,LUSC,THYM	LUAD
ENSG00000231607	ENSG00000112742	TTK	CESC,COAD,ESCA,STAD,THYM	CESC,COAD,ESCA,STAD
ENSG00000231607	ENSG00000120334	CENPL	CESC,COAD,DLBC,ESCA,LAML,LUSC,OV,STAD,THYM	CESC,ESCA,LUSC,STAD
ENSG00000231607	ENSG00000146410	MTFR2	CESC,OV,STAD,THYM,UCS	CESC,STAD
ENSG00000231607	ENSG00000156802	ATAD2	CESC,COAD,ESCA,STAD,THYM	CESC,COAD,ESCA,STAD
ENSG00000231607	ENSG00000172167	MTBP	CESC,COAD,ESCA,LAML,STAD	CESC,COAD,ESCA,STAD
ENSG00000231607	ENSG00000174891	RSRC1	CESC,COAD,ESCA,LUAD,LUSC,STAD	CESC,LUSC
ENSG00000231607	ENSG00000204899	MZT1	CESC,COAD,DLBC,ESCA,LUSC,OV,STAD,THYM,UCS	CESC,COAD,ESCA,LUSC,STAD
ENSG00000231607	ENSG00000024526	DEPDC1	COAD,DLBC,ESCA,LUSC,THYM	ESCA,LUSC
ENSG00000231607	ENSG00000070950	RAD18	COAD,DLBC,LUAD,LUSC,THYM	COAD
ENSG00000231607	ENSG00000071794	HLTF	COAD,DLBC,ESCA,LUAD,LUSC	LUSC
ENSG00000231607	ENSG00000080839	RBL1	COAD,DLBC,ESCA,LAML,LUAD,LUSC,STAD,THYM,UCS	COAD,ESCA,LUSC,STAD
ENSG00000231607	ENSG00000120802	TMPO	COAD,DLBC,ESCA,LAML,LUAD,LUSC,OV,STAD,THYM	LUSC
ENSG00000231607	ENSG00000121621	KIF18A	COAD,ESCA,OV,STAD,THYM	COAD,ESCA,STAD
ENSG00000231607	ENSG00000123219	CENPK	COAD,DLBC,ESCA,LUAD,LUSC,OV,STAD,THYM	COAD,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000132436	FIGNL1	COAD,DLBC,ESCA,STAD,THYM	COAD,ESCA,STAD
ENSG00000231607	ENSG00000132680	KHDC4	COAD,DLBC,ESCA,LUAD,LUSC,STAD	LUAD,LUSC
ENSG00000231607	ENSG00000136122	BORA	COAD,DLBC,ESCA,LAML,LUAD,LUSC,OV,STAD,THYM	ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000136492	BRIP1	COAD,ESCA,LAML,LUAD,THYM	COAD,ESCA,LUAD
ENSG00000231607	ENSG00000139734	DIAPH3	COAD,DLBC,ESCA,LAML,LUSC,OV,STAD,THYM	COAD,STAD
ENSG00000231607	ENSG00000152749	GPR180	COAD,ESCA,LUAD,OV,STAD,UCS	COAD
ENSG00000231607	ENSG00000159147	DONSON	COAD,DLBC,ESCA,LUAD,LUSC,OV,STAD,THYM	LUAD,LUSC
ENSG00000231607	ENSG00000163006	CCDC138	COAD,ESCA,LUAD,LUSC,STAD,THYM	LUSC,STAD
ENSG00000231607	ENSG00000163507	CIP2A	COAD,DLBC,ESCA,LAML,LUAD,OV,STAD,THYM	COAD,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000163781	TOPBP1	COAD,DLBC,LUAD,LUSC,OV,STAD,THYM	LUSC,STAD
ENSG00000231607	ENSG00000170191	NANP	COAD,LUAD,STAD,THYM,UCS	COAD
ENSG00000231607	ENSG00000172244	C5orf34	COAD,DLBC,ESCA,LAML,LUAD,STAD,THYM	COAD,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000183814	LIN9	COAD,ESCA,LAML,LUAD,LUSC,STAD,THYM	LUSC
ENSG00000231607	ENSG00000196584	XRCC2	COAD,DLBC,ESCA,STAD,THYM	COAD,ESCA,STAD
ENSG00000231607	ENSG00000197299	BLM	COAD,DLBC,ESCA,LAML,OV,STAD,THYM	COAD,ESCA,STAD
ENSG00000231607	ENSG00000205208	C4orf46	COAD,ESCA,LAML,THYM,UCS	ESCA
ENSG00000231607	ENSG00000213186	TRIM59	COAD,DLBC,ESCA,LUAD,LUSC,THYM,UCS	COAD,ESCA,LUAD,LUSC
ENSG00000231607	ENSG00000035499	DEPDC1B	DLBC,ESCA,LUSC,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000068489	PRR11	DLBC,ESCA,LAML,OV,STAD,THYM	ESCA,STAD
ENSG00000231607	ENSG00000075218	GTSE1	DLBC,ESCA,LAML,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000077152	UBE2T	DLBC,LUSC,STAD,THYM,UCS	LUSC,STAD
ENSG00000231607	ENSG00000087586	AURKA	DLBC,ESCA,LUSC,OV,THYM	ESCA,LUSC
ENSG00000231607	ENSG00000091651	ORC6	DLBC,ESCA,LUSC,STAD,THYM,UCS	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000100479	POLE2	DLBC,ESCA,LUAD,OV,STAD,THYM,UCS	ESCA,LUAD,STAD
ENSG00000231607	ENSG00000105011	ASF1B	DLBC,ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000111665	CDCA3	DLBC,ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC
ENSG00000231607	ENSG00000112029	FBXO5	DLBC,ESCA,LAML,OV,STAD,THYM,UCS	ESCA
ENSG00000231607	ENSG00000123374	CDK2	DLBC,ESCA,LUSC,STAD,THYM	ESCA
ENSG00000231607	ENSG00000123485	HJURP	DLBC,ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000128944	KNSTRN	DLBC,ESCA,LAML,STAD,THYM,UCS	STAD
ENSG00000231607	ENSG00000137804	NUSAP1	DLBC,ESCA,LAML,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000137807	KIF23	DLBC,ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000140451	PIF1	DLBC,ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000143401	ANP32E	DLBC,ESCA,LAML,STAD,THYM,UCS	ESCA
ENSG00000231607	ENSG00000144354	CDCA7	DLBC,ESCA,LUSC,THYM,UCS	ESCA,LUSC
ENSG00000231607	ENSG00000148773	MKI67	DLBC,LAML,OV,STAD,THYM	STAD
ENSG00000231607	ENSG00000151287	TEX30	DLBC,ESCA,LUSC,STAD,THYM,UCS	LUSC
ENSG00000231607	ENSG00000152253	SPC25	DLBC,ESCA,LAML,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000160298	C21orf58	DLBC,ESCA,LUSC,STAD,THYM	ESCA
ENSG00000231607	ENSG00000161800	RACGAP1	DLBC,ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000163918	RFC4	DLBC,ESCA,LUSC,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000164104	HMGB2	DLBC,ESCA,LUSC,STAD,THYM	ESCA,LUSC
ENSG00000231607	ENSG00000164109	MAD2L1	DLBC,ESCA,STAD,THYM,UCS	ESCA,STAD
ENSG00000231607	ENSG00000165480	SKA3	DLBC,ESCA,LUSC,OV,STAD,THYM,UCS	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000166803	PCLAF	DLBC,ESCA,LUSC,STAD,THYM,UCS	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000175063	UBE2C	DLBC,ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000186185	KIF18B	DLBC,ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000198901	PRC1	DLBC,ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000237649	KIFC1	DLBC,ESCA,OV,STAD,THYM	ESCA,STAD
ENSG00000231607	ENSG00000117650	NEK2	ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000158402	CDC25C	ESCA,LAML,OV,STAD,THYM	ESCA,STAD
ENSG00000231607	ENSG00000163808	KIF15	ESCA,LAML,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000169679	BUB1	ESCA,LUSC,OV,STAD,THYM	ESCA,LUSC,STAD
ENSG00000231607	ENSG00000178999	AURKB	ESCA,LUSC,STAD,THYM,UCS	ESCA,LUSC,STAD

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000077458	FAM76B	5	COAD,DLBC,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000077458	FAM76B	6	COAD,DLBC,ESCA,LUAD,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000077458	FAM76B	5	BLCA,COAD,DLBC,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000142856	ITGB3BP	5	COAD,ESCA,LUAD,STAD,THYM
ENSG00000231607	ENSG00000146757	ZNF92	ENSG00000082898	XPO1	5	COAD,ESCA,LAML,LUAD,LUSC
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000082898	XPO1	5	COAD,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000082898	XPO1	6	COAD,ESCA,LUAD,LUSC,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000082898	XPO1	5	BLCA,COAD,LAML,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000166037	CEP57	5	COAD,DLBC,LUAD,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000132953	XPO4	5	BLCA,COAD,DLBC,LAML,LUAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000136108	CKAP2	7	COAD,DLBC,ESCA,LUSC,OV,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000136108	CKAP2	5	BLCA,COAD,DLBC,LAML,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000115942	ORC2	5	COAD,DLBC,LUAD,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000115942	ORC2	5	BLCA,COAD,DLBC,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000147274	RBMX	5	DLBC,ESCA,LUAD,STAD,THYM
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000155330	C16orf87	5	COAD,DLBC,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000155330	C16orf87	5	COAD,DLBC,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000101003	GINS1	5	DLBC,ESCA,LUSC,STAD,THYM
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000152193	OBI1	6	COAD,DLBC,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000152193	OBI1	6	COAD,DLBC,ESCA,LUAD,STAD,THYM
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000163006	CCDC138	5	COAD,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000163006	CCDC138	6	COAD,ESCA,LUAD,LUSC,STAD,THYM
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000121152	NCAPH	5	DLBC,ESCA,LUSC,OV,THYM
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000134283	PPHLN1	5	COAD,DLBC,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000134283	PPHLN1	6	COAD,DLBC,ESCA,LUAD,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000134283	PPHLN1	5	BLCA,COAD,DLBC,LUAD,STAD
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000149187	CELF1	6	BLCA,COAD,DLBC,LAML,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000136146	MED4	5	COAD,DLBC,ESCA,STAD,THYM
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000189403	HMGB1	5	COAD,DLBC,ESCA,LUSC,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000189403	HMGB1	6	COAD,DLBC,ESCA,LUSC,OV,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000177565	TBL1XR1	5	BLCA,COAD,DLBC,LAML,LUAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000144401	METTL21A	5	COAD,DLBC,ESCA,LUAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000144401	METTL21A	5	COAD,DLBC,LAML,LUAD,STAD
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000159086	PAXBP1	5	COAD,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000164104	HMGB2	5	DLBC,ESCA,LUSC,STAD,THYM
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000132680	KHDC4	6	COAD,DLBC,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000137770	CTDSPL2	5	COAD,DLBC,LUAD,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000137770	CTDSPL2	6	BLCA,COAD,DLBC,LAML,LUAD,STAD
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000138398	PPIG	5	COAD,DLBC,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000051825	MPHOSPH9	5	COAD,DLBC,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000051825	MPHOSPH9	6	COAD,DLBC,ESCA,LUAD,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000051825	MPHOSPH9	5	BLCA,COAD,DLBC,LUAD,STAD
ENSG00000231607	ENSG00000146757	ZNF92	ENSG00000156876	SASS6	5	COAD,ESCA,LAML,LUAD,LUSC
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000156876	SASS6	6	COAD,DLBC,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000156876	SASS6	7	COAD,DLBC,ESCA,LUAD,LUSC,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000156876	SASS6	6	BLCA,COAD,DLBC,LAML,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000156970	BUB1B	5	DLBC,ESCA,OV,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000078177	N4BP2	5	BLCA,COAD,LAML,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000148835	TAF5	5	COAD,DLBC,OV,STAD,THYM
ENSG00000231607	ENSG00000146757	ZNF92	ENSG00000120802	TMPO	5	COAD,ESCA,LAML,LUAD,LUSC
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000120802	TMPO	8	COAD,DLBC,ESCA,LUAD,LUSC,OV,STAD,THYM
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000184445	KNTC1	6	COAD,DLBC,ESCA,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000184445	KNTC1	8	COAD,DLBC,ESCA,LUAD,LUSC,OV,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000184445	KNTC1	5	BLCA,COAD,DLBC,LUAD,STAD
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000136100	VPS36	6	BLCA,COAD,DLBC,LAML,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000111665	CDCA3	5	DLBC,ESCA,LUSC,OV,THYM
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000111011	RSRC2	5	COAD,DLBC,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000111011	RSRC2	5	COAD,DLBC,ESCA,STAD,THYM
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000111011	RSRC2	5	BLCA,COAD,DLBC,LUAD,STAD
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000152520	PAN3	5	COAD,DLBC,ESCA,LUAD,STAD
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000152520	PAN3	6	BLCA,COAD,DLBC,LAML,LUAD,STAD
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000139687	RB1	5	BLCA,COAD,DLBC,LAML,LUAD
ENSG00000231607	ENSG00000156374	PCGF6	ENSG00000012048	BRCA1	5	COAD,DLBC,LUAD,STAD,THYM
ENSG00000231607	ENSG00000144161	ZC3H8	ENSG00000131051	RBM39	5	COAD,DLBC,LUAD,LUSC,STAD
ENSG00000231607	ENSG00000118260	CREB1	ENSG00000198625	MDM4	5	BLCA,COAD,DLBC,LAML,LUAD

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000231607	ENST00000443587	PINK1	ENSG00000158828	ENST00000321556	-0.1507	1	-	ESCA,COAD,STAD
ENSG00000231607	ENST00000449579	PINK1	ENSG00000158828	ENST00000321556	-0.1507	1	-	ESCA,COAD,STAD

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000231607.7	ENST00000621282.3	87	141	404
ENSG00000231607.7	ENST00000425586.4	200	1280	1882
ENSG00000231607.7	ENST00000235290.6	148	443	0
ENSG00000231607.7	ENST00000458725.4	130	108	500
ENSG00000231607.7	ENST00000433070.5	63	108	299
ENSG00000231607.7	ENST00000443587.4	56	247	417
ENSG00000231607.7	ENST00000421758.4	64	292	98
ENSG00000231607.7	ENST00000449579.1	58	228	404

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential