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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000230590

Summary for FTX

check button Gene summary

Gene informationEnsembl ID

ENSG00000230590

Gene symbol

FTX

Gene nameFTX transcript, XIST regulator
HGNC

37190

Entrez ID

100302692

Gene typelincRNA
SynonymsXq13.2|FTX
UniProtAcc

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Structure and expression level for FTX

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002305901.096480e+021.452914e+002.482985e-015.851479e+004.870000e-092.430000e-08UPCOAD

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value

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lncRNA-Protein interaction for FTX

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for FTX

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for FTX

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for FTX

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name
LncEditing_401244ENSG00000230590.6chrX74197149-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_401301ENSG00000230590.6chrX74197228-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_401319ENSG00000230590.6chrX74197244-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_401322ENSG00000230590.6chrX74197245-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_401325ENSG00000230590.6chrX74197249-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_401328ENSG00000230590.6chrX74197250-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_401346ENSG00000230590.6chrX74197268-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_401613ENSG00000230590.6chrX74200126-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_403760ENSG00000230590.6chrX74242867-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_403769ENSG00000230590.6chrX74243424-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_403796ENSG00000230590.6chrX74243472-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_403799ENSG00000230590.6chrX74243477-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_403811ENSG00000230590.6chrX74243511-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_403814ENSG00000230590.6chrX74243521-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404437ENSG00000230590.6chrX74261766-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404465ENSG00000230590.6chrX74261955-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404481ENSG00000230590.6chrX74261981-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404485ENSG00000230590.6chrX74261984-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404493ENSG00000230590.6chrX74261992-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404509ENSG00000230590.6chrX74262019-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404793ENSG00000230590.6chrX74265462-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404885ENSG00000230590.6chrX74265939-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404921ENSG00000230590.6chrX74265972-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404937ENSG00000230590.6chrX74265998-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_404969ENSG00000230590.6chrX74266054-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405001ENSG00000230590.6chrX74266089-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405013ENSG00000230590.6chrX74266097-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405125ENSG00000230590.6chrX74266317-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405185ENSG00000230590.6chrX74266408-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405189ENSG00000230590.6chrX74266411-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405617ENSG00000230590.6chrX74274999-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405623ENSG00000230590.6chrX74275000-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405701ENSG00000230590.6chrX74275355-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405707ENSG00000230590.6chrX74275358-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405713ENSG00000230590.6chrX74275359-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405743ENSG00000230590.6chrX74275366-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405749ENSG00000230590.6chrX74275367-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405755ENSG00000230590.6chrX74275368-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405773ENSG00000230590.6chrX74275393-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405833ENSG00000230590.6chrX74275460-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405839ENSG00000230590.6chrX74275463-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405845ENSG00000230590.6chrX74275468-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405851ENSG00000230590.6chrX74275469-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405929ENSG00000230590.6chrX74276068-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_405959ENSG00000230590.6chrX74276120-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406055ENSG00000230590.6chrX74276477-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406067ENSG00000230590.6chrX74276484-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406073ENSG00000230590.6chrX74276487-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406079ENSG00000230590.6chrX74276491-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406097ENSG00000230590.6chrX74276501-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406163ENSG00000230590.6chrX74276556-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406181ENSG00000230590.6chrX74276561-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406217ENSG00000230590.6chrX74276633-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406247ENSG00000230590.6chrX74277032-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406253ENSG00000230590.6chrX74277044-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406313ENSG00000230590.6chrX74277086-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406337ENSG00000230590.6chrX74277123-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406349ENSG00000230590.6chrX74277143-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406391ENSG00000230590.6chrX74277191-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406397ENSG00000230590.6chrX74277196-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406433ENSG00000230590.6chrX74277255-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406451ENSG00000230590.6chrX74277839-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406463ENSG00000230590.6chrX74277853-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406511ENSG00000230590.6chrX74277889-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406517ENSG00000230590.6chrX74277892-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406523ENSG00000230590.6chrX74277900-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406547ENSG00000230590.6chrX74277933-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406573ENSG00000230590.6chrX74278391-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406601ENSG00000230590.6chrX74278417-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406615ENSG00000230590.6chrX74278422-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406622ENSG00000230590.6chrX74278427-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406629ENSG00000230590.6chrX74278431-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406650ENSG00000230590.6chrX74278451-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406699ENSG00000230590.6chrX74278466-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406720ENSG00000230590.6chrX74278485-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406727ENSG00000230590.6chrX74278491-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406860ENSG00000230590.6chrX74278623-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406916ENSG00000230590.6chrX74278659-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406965ENSG00000230590.6chrX74278667-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406979ENSG00000230590.6chrX74278683-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_406993ENSG00000230590.6chrX74278687-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_407007ENSG00000230590.6chrX74278691-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_407035ENSG00000230590.6chrX74278706-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_407042ENSG00000230590.6chrX74278715-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_407084ENSG00000230590.6chrX74278755-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_407112ENSG00000230590.6chrX74279160-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_407119ENSG00000230590.6chrX74279166-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_407154ENSG00000230590.6chrX74279193-lincRNAFTXENST00000603672.4lincRNAFTX-010
LncEditing_407161ENSG00000230590.6chrX74279194-lincRNAFTXENST00000603672.4lincRNAFTX-010

check buttonEdited-associated DElncRNAs in cancer.
Differentially expressed gene
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange
ENSG00000230590LncEditing_401244COADchrX_74197149_-1.547600e+009.758982e-011.503239e+008.637322e+005.754607e-181.601710e-17UP
ENSG00000230590LncEditing_401301COADchrX_74197228_-7.339532e-011.279307e+00-1.247501e+002.698178e+006.972006e-037.244084e-03DOWN
ENSG00000230590LncEditing_401319COADchrX_74197244_-1.403546e+001.123166e+003.110367e+009.566240e+001.108643e-214.919603e-21UP
ENSG00000230590LncEditing_401322COADchrX_74197245_-1.472694e+001.031558e+001.946914e+009.366881e+007.470722e-212.893207e-20UP
ENSG00000230590LncEditing_401325COADchrX_74197249_-1.259449e+001.199760e+001.427615e+019.009427e+002.071367e-196.684865e-19UP
ENSG00000230590LncEditing_401328COADchrX_74197250_-1.613544e+001.132423e+001.957640e+005.856797e+004.718788e-096.979873e-09UP
ENSG00000230590LncEditing_401346COADchrX_74197268_-1.048209e+001.348940e+00-2.748012e+009.042724e+001.528158e-195.166630e-19DOWN
ENSG00000230590LncEditing_404885COADchrX_74265939_-2.181634e+009.715308e-018.568411e-015.102229e+003.356755e-074.413512e-07UP
ENSG00000230590LncEditing_404921COADchrX_74265972_-2.120632e+009.663205e-018.818961e-013.739272e+001.845543e-042.079897e-04UP
ENSG00000230590LncEditing_404937COADchrX_74265998_-2.002978e+008.519492e-018.108277e-014.581682e+004.612520e-065.582197e-06UP
ENSG00000230590LncEditing_404969COADchrX_74266054_-6.242840e-011.350771e+00-8.980622e-013.521261e+004.294996e-044.740073e-04DOWN
ENSG00000230590LncEditing_405013COADchrX_74266097_-2.160045e+001.030707e+009.368326e-012.815305e+004.873092e-035.088081e-03UP
ENSG00000230590LncEditing_405125COADchrX_74266317_-2.140596e+009.792742e-018.863457e-014.135421e+003.543040e-054.123867e-05UP
ENSG00000230590LncEditing_401613LAMLchrX_74200126_-8.707311e+006.488793e+002.356951e+002.215270e+002.674153e-022.789341e-02UP
ENSG00000230590LncEditing_403760LAMLchrX_74242867_-9.812010e+008.100225e+003.615501e+002.418338e+001.559161e-021.682010e-02UP
ENSG00000230590LncEditing_403769LAMLchrX_74243424_-1.225577e+017.962338e+001.607207e+004.353027e+001.342705e-052.474987e-05UP
ENSG00000230590LncEditing_403796LAMLchrX_74243472_-1.159683e+017.571269e+001.625690e+005.388698e+007.097008e-082.096843e-07UP
ENSG00000230590LncEditing_403799LAMLchrX_74243477_-1.034472e+018.300907e+003.149077e+002.354789e+001.853324e-021.981692e-02UP
ENSG00000230590LncEditing_403811LAMLchrX_74243511_-1.101186e+017.227928e+001.646349e+006.046400e+001.481183e-096.463821e-09UP
ENSG00000230590LncEditing_403814LAMLchrX_74243521_-1.182551e+018.140546e+001.856306e+003.476240e+005.084963e-046.993240e-04UP
ENSG00000230590LncEditing_404437LAMLchrX_74261766_-9.716244e+007.705333e+002.989168e+003.362635e+007.720234e-041.030756e-03UP
ENSG00000230590LncEditing_404465LAMLchrX_74261955_-1.027871e+018.294474e+003.231684e+002.101783e+003.557230e-023.627729e-02UP
ENSG00000230590LncEditing_404481LAMLchrX_74261981_-9.470442e+007.603929e+003.157695e+003.732779e+001.893784e-042.831505e-04UP
ENSG00000230590LncEditing_404485LAMLchrX_74261984_-9.390225e+008.154585e+004.912838e+002.462139e+001.381112e-021.501472e-02UP
ENSG00000230590LncEditing_404493LAMLchrX_74261992_-9.234853e+005.439102e+001.309380e+005.391078e+007.003611e-082.074211e-07UP
ENSG00000230590LncEditing_404509LAMLchrX_74262019_-9.708433e+006.222324e+001.558154e+006.078721e+001.211448e-095.440502e-09UP
ENSG00000230590LncEditing_404793LAMLchrX_74265462_-8.791284e+006.607829e+002.427788e+002.601387e+009.284766e-031.028402e-02UP
ENSG00000230590LncEditing_405001LAMLchrX_74266089_-9.822842e+007.928984e+003.236199e+002.833191e+004.608586e-035.344229e-03UP
ENSG00000230590LncEditing_405185LAMLchrX_74266408_-9.049205e+007.787138e+004.614720e+002.749871e+005.961865e-036.779837e-03UP
ENSG00000230590LncEditing_405189LAMLchrX_74266411_-8.651794e+006.371894e+002.266149e+001.985426e+004.709709e-024.725013e-02UP
ENSG00000230590LncEditing_405617LAMLchrX_74274999_-8.761845e+003.782306e+008.251039e-013.584211e+003.380985e-044.761136e-04UP
ENSG00000230590LncEditing_405623LAMLchrX_74275000_-9.157014e+007.929386e+004.815376e+001.983969e+004.725933e-024.733599e-02UP
ENSG00000230590LncEditing_405701LAMLchrX_74275355_-1.022609e+017.473854e+002.210773e+004.476094e+007.602095e-061.494998e-05UP
ENSG00000230590LncEditing_405707LAMLchrX_74275358_-9.479031e+006.070651e+001.555480e+005.157658e+002.500580e-076.462169e-07UP
ENSG00000230590LncEditing_405713LAMLchrX_74275359_-9.404291e+006.337634e+001.756312e+004.733306e+002.208917e-064.871452e-06UP
ENSG00000230590LncEditing_405743LAMLchrX_74275366_-9.580353e+007.858054e+003.497643e+003.405653e+006.600607e-048.899290e-04UP
ENSG00000230590LncEditing_405749LAMLchrX_74275367_-9.772255e+008.383894e+004.523433e+002.170383e+002.997783e-023.095537e-02UP
ENSG00000230590LncEditing_405755LAMLchrX_74275368_-1.022972e+018.315497e+003.345694e+002.537285e+001.117160e-021.223132e-02UP
ENSG00000230590LncEditing_405773LAMLchrX_74275393_-9.251557e+007.159184e+002.703425e+003.034948e+002.405771e-032.927219e-03UP
ENSG00000230590LncEditing_405833LAMLchrX_74275460_-1.018375e+017.914983e+002.750197e+003.489367e+004.841665e-046.688430e-04UP
ENSG00000230590LncEditing_405839LAMLchrX_74275463_-9.891219e+007.583440e+002.608951e+003.854359e+001.160332e-041.805995e-04UP
ENSG00000230590LncEditing_405845LAMLchrX_74275468_-9.120647e+004.880843e+001.108640e+005.237770e+001.625280e-074.430952e-07UP
ENSG00000230590LncEditing_405851LAMLchrX_74275469_-9.686923e+006.393647e+001.668337e+005.875314e+004.220417e-091.659941e-08UP
ENSG00000230590LncEditing_405929LAMLchrX_74276068_-1.096522e+017.927480e+002.136748e+004.579594e+004.658788e-069.525832e-06UP
ENSG00000230590LncEditing_405959LAMLchrX_74276120_-1.178508e+018.062615e+001.826011e+003.944213e+008.006239e-051.285787e-04UP
ENSG00000230590LncEditing_406055LAMLchrX_74276477_-9.459858e+006.475671e+001.828860e+004.681976e+002.841232e-066.081319e-06UP
ENSG00000230590LncEditing_406067LAMLchrX_74276484_-9.207500e+006.986832e+002.511484e+003.383925e+007.145753e-049.571589e-04UP
ENSG00000230590LncEditing_406073LAMLchrX_74276487_-9.025576e+004.046892e+008.641512e-015.231783e+001.678826e-074.566849e-07UP
ENSG00000230590LncEditing_406079LAMLchrX_74276491_-9.028704e+006.245277e+001.880571e+003.700250e+002.153871e-043.178054e-04UP
ENSG00000230590LncEditing_406097LAMLchrX_74276501_-9.186810e+006.186005e+001.752676e+004.106442e+004.018003e-056.797580e-05UP
ENSG00000230590LncEditing_406163LAMLchrX_74276556_-9.626043e+005.689120e+001.317979e+006.050489e+001.444067e-096.324194e-09UP
ENSG00000230590LncEditing_406181LAMLchrX_74276561_-9.501677e+006.170508e+001.605671e+005.393074e+006.926242e-082.060436e-07UP
ENSG00000230590LncEditing_406217LAMLchrX_74276633_-9.752168e+007.889586e+003.270396e+002.964459e+003.032157e-033.625086e-03UP
ENSG00000230590LncEditing_406247LAMLchrX_74277032_-9.089646e+006.368523e+001.948310e+004.053965e+005.035668e-058.392780e-05UP
ENSG00000230590LncEditing_406253LAMLchrX_74277044_-9.177357e+007.698582e+003.944990e+002.430874e+001.506246e-021.630337e-02UP
ENSG00000230590LncEditing_406313LAMLchrX_74277086_-9.647419e+007.891393e+003.449905e+002.903968e+003.684660e-034.350435e-03UP
ENSG00000230590LncEditing_406337LAMLchrX_74277123_-1.041387e+017.919898e+002.531947e+003.781177e+001.560888e-042.362374e-04UP
ENSG00000230590LncEditing_406349LAMLchrX_74277143_-1.028088e+018.294179e+003.227962e+002.503763e+001.228803e-021.338246e-02UP
ENSG00000230590LncEditing_406391LAMLchrX_74277191_-9.248930e+007.581135e+003.485868e+003.066571e+002.165291e-032.660830e-03UP
ENSG00000230590LncEditing_406397LAMLchrX_74277196_-9.292134e+007.779891e+003.902285e+002.370669e+001.775595e-021.905178e-02UP
ENSG00000230590LncEditing_406433LAMLchrX_74277255_-8.938703e+006.007162e+001.744038e+003.484677e+004.927317e-046.791559e-04UP
ENSG00000230590LncEditing_406451LAMLchrX_74277839_-9.370895e+006.552597e+001.937534e+004.719192e+002.367835e-065.194096e-06UP
ENSG00000230590LncEditing_406463LAMLchrX_74277853_-9.913202e+007.594183e+002.601075e+004.175130e+002.978163e-055.165774e-05UP
ENSG00000230590LncEditing_406511LAMLchrX_74277889_-9.425873e+007.347026e+002.781907e+003.498748e+004.674490e-046.479231e-04UP
ENSG00000230590LncEditing_406517LAMLchrX_74277892_-9.340742e+006.561872e+001.962980e+004.492181e+007.049753e-061.397503e-05UP
ENSG00000230590LncEditing_406523LAMLchrX_74277900_-1.020267e+016.881332e+001.759982e+005.787111e+007.160737e-092.671755e-08UP
ENSG00000230590LncEditing_406547LAMLchrX_74277933_-9.050239e+004.923694e+001.138673e+004.724079e+002.311605e-065.079773e-06UP
ENSG00000230590LncEditing_406573LAMLchrX_74278391_-9.944701e+007.242573e+002.186147e+004.563784e+005.023966e-061.022174e-05UP
ENSG00000230590LncEditing_406601LAMLchrX_74278417_-1.050130e+017.195583e+001.833569e+005.752654e+008.785329e-093.219549e-08UP
ENSG00000230590LncEditing_406615LAMLchrX_74278422_-9.728321e+007.217283e+002.321613e+004.865553e+001.141372e-062.620064e-06UP
ENSG00000230590LncEditing_406622LAMLchrX_74278427_-9.926594e+008.094125e+003.396466e+002.362468e+001.815371e-021.944478e-02UP
ENSG00000230590LncEditing_406629LAMLchrX_74278431_-1.036323e+018.184758e+002.937186e+002.371632e+001.770973e-021.901871e-02UP
ENSG00000230590LncEditing_406650LAMLchrX_74278451_-1.098133e+018.067952e+002.248314e+002.885655e+003.906001e-034.589830e-03UP
ENSG00000230590LncEditing_406699LAMLchrX_74278466_-1.069101e+018.162633e+002.568772e+002.331229e+001.974130e-022.101767e-02UP
ENSG00000230590LncEditing_406720LAMLchrX_74278485_-9.634841e+007.823110e+003.327580e+002.970889e+002.969395e-033.553491e-03UP
ENSG00000230590LncEditing_406727LAMLchrX_74278491_-9.011121e+004.983483e+001.170204e+004.347130e+001.379304e-052.534882e-05UP
ENSG00000230590LncEditing_406860LAMLchrX_74278623_-9.528121e+007.597806e+003.061766e+004.334241e+001.462637e-052.668179e-05UP
ENSG00000230590LncEditing_406916LAMLchrX_74278659_-9.499199e+008.205418e+004.734199e+002.504094e+001.227654e-021.338175e-02UP
ENSG00000230590LncEditing_406965LAMLchrX_74278667_-9.744048e+008.063594e+003.661686e+003.185124e+001.446922e-031.836535e-03UP
ENSG00000230590LncEditing_406979LAMLchrX_74278683_-1.082245e+018.181166e+002.477402e+003.139888e+001.690122e-032.108385e-03UP
ENSG00000230590LncEditing_406993LAMLchrX_74278687_-1.053779e+017.054750e+001.727398e+006.036049e+001.579336e-096.799317e-09UP
ENSG00000230590LncEditing_407007LAMLchrX_74278691_-9.985835e+007.489479e+002.409535e+004.392484e+001.120628e-052.112940e-05UP
ENSG00000230590LncEditing_407035LAMLchrX_74278706_-9.819392e+008.322881e+004.191981e+002.258587e+002.390910e-022.512999e-02UP
ENSG00000230590LncEditing_407042LAMLchrX_74278715_-9.977140e+007.815096e+002.837985e+003.866892e+001.102314e-041.737476e-04UP
ENSG00000230590LncEditing_407084LAMLchrX_74278755_-9.834760e+008.077019e+003.520296e+002.988704e+002.801638e-033.365781e-03UP
ENSG00000230590LncEditing_407112LAMLchrX_74279160_-1.017090e+016.683231e+001.650628e+006.304320e+002.894614e-101.521212e-09UP
ENSG00000230590LncEditing_407119LAMLchrX_74279166_-1.079931e+018.014643e+002.324344e+003.308379e+009.383760e-041.230249e-03UP
ENSG00000230590LncEditing_407154LAMLchrX_74279193_-9.864463e+006.718336e+001.804609e+005.655736e+001.551796e-085.279527e-08UP
ENSG00000230590LncEditing_407161LAMLchrX_74279194_-9.573982e+007.257960e+002.502785e+004.065415e+004.794710e-058.034554e-05UP

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value
ENSG00000230590LncEditing_403799-6.159692e-018.469318e-031.766980e-02
ENSG00000230590LncEditing_404465-4.947082e-013.687455e-024.193576e-02
ENSG00000230590LncEditing_404485-3.948191e-016.619830e-031.602777e-02
ENSG00000230590LncEditing_405743-5.163619e-012.834672e-058.541607e-04
ENSG00000230590LncEditing_406313-3.364480e-011.202041e-022.220331e-02
ENSG00000230590LncEditing_406650-4.218755e-014.003255e-024.331880e-02
ENSG00000230590LncEditing_4068603.131050e-016.993006e-031.631959e-02
ENSG00000230590LncEditing_407035-4.857680e-012.558156e-023.372115e-02

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000230590.6ENST00000603672.452337179
ENSG00000230590.6ENST00000602812.41771018485
ENSG00000230590.6ENST00000602420.4841215961
ENSG00000230590.6ENST00000430772.471265480
ENSG00000230590.6ENST00000602576.471320535
ENSG00000230590.6ENST00000602776.455436269
ENSG00000230590.6ENST00000429124.471247462
ENSG00000230590.6ENST00000418855.410121351830
ENSG00000230590.6ENST00000455395.471327542
ENSG00000230590.6ENST00000423992.264462653