 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | FAAP100,ATAT1,IFFO1,ARL16,VAMP1,SLC26A11,TCEA2,RBM39,TRMU,SLC26A6,SLC25A27,LENG8,TMEM234,ATXN7L2,PHKA2,CRIP2,DDX56,RNF166,MZF1,CHTF18,PPOX,RRNAD1,KAT8,N4BP2L2,DMTF1,L3HYPDH,PIGL,NEK3,MLLT6,MKS1,RP11-523H20.5,CEP95,CSAD,KIAA0895L,LMBR1L,MUTYH,DCAF8,NPRL2,C20orf96,KLHDC4,PHYKPL,CCNL2,RABGGTA,ARFGAP1,AP1G2,CENATAC,NPEPL1,CLK3,ANKRD10,SAFB2,KCTD13,MSANTD2,IFT27,RECQL5,TUBGCP6,CCDC14,NARF,SARS2,TMEM175,CLK4,TBC1D17,RFNG,INTS11,TP53I13,CENPT,TTC14,CCNT2,OSBPL7,SPG7,THOC1,KAT2A,C19orf44,ACBD4,RBM4B,METAP1D,PLA2G6,RAB4B,TAF1C,LCAT,FBXW7,RHPN1,ENDOV,MST1,AAAS,CHKB,NAA10,POLI,WDR83,OSGEP,EXD3,USF1,CLK1,PRPF39,NFKBID,CXXC1,EZH1,MRNIP,ERMARD,RABL2A,DHPS,ELMOD3,RPAIN,PCED1A,ABTB1,OFD1,ACYP1,GSTM2,HAUS5,FCHSD1,IFT172,PHF1,HDAC7,ACIN1,HDAC10,HEXIM2,SCRN2,HSF4,ANKS3,ARGLU1,YJEFN3,RAB2B,C3orf62,WSB1,ANKRD54,SGSM2,TADA2A,DENND6B,ORMDL1,FAM228B,MIIP,RSRP1,USP21,SGF29,NEK8,KLC1,AGER,GPS2,TRIM52,CENPS,NOL12,CLASRP,CWC25,FIZ1,STAC3,STK36,MICAL1,TSEN54,TIA1,ZMAT1,ZNF83,ATG4B,CCDC191,DCUN1D2,IFT20,OGFR,PTOV1,ZNF18,ABCD4,PAN2,GOLGA8A,BRAT1,PELP1,FBXL8,NEIL1,RBM6,DDX5,FAM193B,DTX3,AARSD1,TMCO6,DUSP28,SLC25A28,POP5,RBM5,CZIB,YPEL3,SAP30BP,LUC7L,KLHL17,ARHGAP33,LUC7L2,TTLL3,HEXD,BBS4,VCPKMT,PARP6,DPH7,CCDC24,UBXN11,DUS1L,MTA1,B9D1,NEURL4,KHDC4,NR2C1,CROCC,APBB3,RSAD1,ERCC5,PNISR,DXO,MRPL38,WBP1,RABL2B,TEPSIN,SIRT7,ENKD1,IQCC | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DCAF8,DPH7,APITD1,ZNF18,ZMAT1,DHPS,HAUS5,LMBR1L,EFHC1,ENTHD2,OXLD1,CFAP36,STX16,TRMU,TIA1,RBM5,KLHDC4,C19orf44,ZNF83,CWC25,AP1G2,SLC25A28,STAC3,DCUN1D2,CLASRP,LUC7L,MIIP,C14orf79,TMCO6,MZF1,C3orf62,VAMP1,CXXC1,KIAA0907,SRSF5,TSEN54,NEK3,NAA10,ENGASE,EZH1,NT5C,MDM4,CSAD,WSB1,CCDC130,SLC26A11,KLHDC9,FBXL8,GSTM2,OGFR,ABCD4,HSF4,STK36,AARSD1,POP5,PRKRIP1,SGF29,RBM6,AP4B1,ANKS3 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | PLEKHB2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000230148 | ENST00000502764 | exon_skip_470226 | chr7:103307595-103307708 | -10.65 | -0.1098 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000230148 | ENSG00000013441 | CLK1 | ACC,GBM,KICH,KIRC,KIRP,PCPG,SKCM,TGCT | KIRC | | | ENSG00000230148 | ENSG00000108773 | KAT2A | ACC,KICH,KIRC,KIRP,PCPG,SKCM,TGCT,UCS | KIRC,KIRP | | | ENSG00000230148 | ENSG00000135722 | FBXL8 | ACC,KICH,KIRC,KIRP,PCPG | KIRC,KIRP | | | ENSG00000230148 | ENSG00000167615 | LENG8 | ACC,KIRC,KIRP,PCPG,SKCM | KIRC | | | ENSG00000230148 | ENSG00000108799 | EZH1 | BRCA,KICH,KIRP,PAAD,TGCT,UCS | | BRCA | | ENSG00000230148 | ENSG00000141295 | SCRN2 | BRCA,GBM,MESO,PAAD,PCPG | | BRCA | | ENSG00000230148 | ENSG00000175309 | PHYKPL | BRCA,GBM,KICH,KIRC,KIRP,SKCM | KIRC | | | ENSG00000230148 | ENSG00000004777 | ARHGAP33 | CESC,KIRC,KIRP,PAAD,PCPG,TGCT,UCS | KIRC | | | ENSG00000230148 | ENSG00000006025 | OSBPL7 | CESC,KICH,KIRC,KIRP,PCPG | KIRP | | | ENSG00000230148 | ENSG00000124074 | ENKD1 | CESC,KICH,KIRC,KIRP,PCPG,UCS | KIRP | | | ENSG00000230148 | ENSG00000132522 | GPS2 | CESC,GBM,KIRC,KIRP,PAAD,PCPG,SKCM,TGCT | KIRC,KIRP | | | ENSG00000230148 | ENSG00000139631 | CSAD | CESC,GBM,KIRC,KIRP,PAAD,PCPG,SKCM,TGCT | KIRC | | | ENSG00000230148 | ENSG00000158062 | UBXN11 | CESC,KICH,KIRC,KIRP,LAML,PAAD,PCPG,TGCT,UCS | KIRC,KIRP | | | ENSG00000230148 | ENSG00000158106 | RHPN1 | CESC,GBM,KICH,KIRC,KIRP,UCS | KIRP | | | ENSG00000230148 | ENSG00000167543 | TP53I13 | CESC,KICH,KIRC,KIRP,LAML,PAAD,PCPG | KIRP | | | ENSG00000230148 | ENSG00000168096 | ANKS3 | CESC,KICH,KIRC,KIRP,PCPG,SKCM,UCS | KIRP | | | ENSG00000230148 | ENSG00000175455 | CCDC14 | CESC,GBM,KICH,KIRC,KIRP,PCPG,SKCM,TGCT | KIRC,KIRP | | | ENSG00000230148 | ENSG00000196123 | KIAA0895L | CESC,KICH,KIRC,KIRP,LAML,PAAD,PCPG,SKCM,TGCT,UCS | KIRC,KIRP | | | ENSG00000230148 | ENSG00000250067 | YJEFN3 | CESC,KIRC,KIRP,PCPG,TGCT | KIRC,KIRP | | | ENSG00000230148 | ENSG00000100288 | CHKB | GBM,KIRC,KIRP,PCPG,TGCT,UCS | KIRC | | | ENSG00000230148 | ENSG00000113240 | CLK4 | GBM,KICH,KIRC,KIRP,SKCM,TGCT | KIRC | | | ENSG00000230148 | ENSG00000117616 | RSRP1 | GBM,KICH,KIRC,KIRP,PCPG,SKCM,TGCT,UCS | KIRC | | | ENSG00000230148 | ENSG00000161010 | MRNIP | GBM,KICH,KIRC,KIRP,PAAD,SKCM,TGCT,UCS | KIRC | | | ENSG00000230148 | ENSG00000010295 | IFFO1 | KICH,KIRC,KIRP,LAML,PAAD,PCPG | KIRC,KIRP | | | ENSG00000230148 | ENSG00000044446 | PHKA2 | KICH,KIRC,KIRP,LAML,PAAD | KIRC | | | ENSG00000230148 | ENSG00000104859 | CLASRP | KICH,KIRC,KIRP,PAAD,PCPG,TGCT,UCS | KIRC | | | ENSG00000230148 | ENSG00000109046 | WSB1 | KICH,KIRC,KIRP,PCPG,SKCM,TGCT | KIRC | | | ENSG00000230148 | ENSG00000113108 | APBB3 | KICH,KIRC,KIRP,PAAD,SARC,SKCM,TGCT | KIRC | | | ENSG00000230148 | ENSG00000127586 | CHTF18 | KICH,KIRC,KIRP,PCPG,UCS | KIRC,KIRP | | | ENSG00000230148 | ENSG00000139636 | LMBR1L | KICH,KIRC,KIRP,PAAD,PCPG,THYM,UCS | KIRC | | | ENSG00000230148 | ENSG00000158717 | RNF166 | KICH,KIRC,KIRP,PCPG,SKCM,THYM,UCS | KIRC | | | ENSG00000230148 | ENSG00000167604 | NFKBID | KICH,KIRC,KIRP,PAAD,THYM,UCS | KIRC,KIRP | | | ENSG00000230148 | ENSG00000174943 | KCTD13 | KICH,KIRC,KIRP,PAAD,TGCT | KIRC,KIRP | | | ENSG00000230148 | ENSG00000175265 | GOLGA8A | KICH,KIRC,KIRP,PAAD,PCPG,TGCT,UCS | KIRC,KIRP | | | ENSG00000230148 | ENSG00000186166 | CENATAC | KICH,KIRC,KIRP,PCPG,SKCM,TGCT,UCS | KIRC,KIRP | | | ENSG00000230148 | ENSG00000187961 | KLHL17 | KICH,KIRC,KIRP,PCPG,THYM | KIRC | | | ENSG00000230148 | ENSG00000197948 | FCHSD1 | KICH,KIRC,KIRP,LAML,PAAD,TGCT,THYM | KIRC,KIRP | | | ENSG00000230148 | ENSG00000213398 | LCAT | KICH,KIRC,KIRP,LAML,PCPG,TGCT | KIRC,KIRP | | | ENSG00000230148 | ENSG00000221978 | CCNL2 | KICH,KIRC,KIRP,PCPG,SKCM,TGCT,UCS | KIRC,KIRP | | | ENSG00000230148 | ENSG00000060491 | OGFR | KIRC,KIRP,LAML,PAAD,PCPG | KIRC | | | ENSG00000230148 | ENSG00000100429 | HDAC10 | KIRC,KIRP,PAAD,PCPG,TGCT,THYM | KIRC,KIRP | | | ENSG00000230148 | ENSG00000135596 | MICAL1 | KIRC,KIRP,SARC,TGCT,THYM | KIRC,KIRP | | | ENSG00000230148 | ENSG00000162650 | ATXN7L2 | KIRC,KIRP,TGCT,THYM,UCS | KIRP | | | ENSG00000230148 | ENSG00000185482 | STAC3 | KIRC,KIRP,LAML,PCPG,TGCT | KIRC,KIRP | | | ENSG00000230148 | ENSG00000204305 | AGER | KIRC,KIRP,SARC,TGCT,UCS | KIRC,KIRP | | | ENSG00000230148 | ENSG00000214021 | TTLL3 | KIRC,KIRP,PCPG,SKCM,TGCT | KIRC,KIRP | | | ENSG00000230148 | ENSG00000215440 | NPEPL1 | KIRC,KIRP,LAML,MESO,PCPG,SKCM,UCS | KIRC | | | ENSG00000230148 | ENSG00000273899 | NOL12 | KIRC,KIRP,PCPG,TGCT,UCS | KIRC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000230148.7 | ENST00000504972.3 | 60 | 366 | 548 | | ENSG00000230148.7 | ENST00000435312.4 | 107 | 520 | 197 | | ENSG00000230148.7 | ENST00000508688.4 | 85 | 537 | 794 | | ENSG00000230148.7 | ENST00000502764.2 | 57 | 170 | 0 |
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