lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | ZCCHC10,IQGAP1,CPEB4,POLK,ERBIN,SMIM14,AFF4,CTNNA1,ELF1,CAP1,IL6ST,RASA1,PKD2,CSNK1A1,KIAA0232,SNX29 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000230082 | ENST00000431558 | exon_skip_5818 | chr1:45568484-45568684 | -23.81 | -0.1315 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000230082 | ENST00000431558 | exon_skip_140339 | chr16:635611-635774 | -22.53 | -0.1621 | METTL26 | ENST00000301686 | Frame-shift | ENSG00000230082 | ENST00000431558 | exon_skip_303345 | chr19:17227839-17228005 | -18.86 | -0.1171 | OCEL1 | ENST00000215061 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | LncEditing_102024 | ENSG00000230082.1 | chr3 | 9953502 | + | antisense | PRRT3-AS1 | ENST00000431558.1 | antisense | PRRT3-AS1-001 | LncEditing_102026 | ENSG00000230082.1 | chr3 | 9953509 | + | antisense | PRRT3-AS1 | ENST00000431558.1 | antisense | PRRT3-AS1-001 | LncEditing_102040 | ENSG00000230082.1 | chr3 | 9953710 | + | antisense | PRRT3-AS1 | ENST00000431558.1 | antisense | PRRT3-AS1-001 |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | ENSG00000230082 | LncEditing_102024 | ESCA | chr3_9953502_+ | 4.602323e+00 | 2.487628e+00 | 1.126644e+00 | 3.511025e+00 | 4.463820e-04 | 5.259228e-04 | UP | ENSG00000230082 | LncEditing_102040 | ESCA | chr3_9953710_+ | 4.176787e+00 | 2.566686e+00 | 1.423515e+00 | 2.899170e+00 | 3.741515e-03 | 4.078115e-03 | UP |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | ENSG00000230082 | LncEditing_102026 | 4.233910e-01 | 5.811324e-03 | 7.906315e-03 |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000230082 | ENST00000431558 | SMIM14 | ENSG00000163683 | ENST00000295958 | -0.1088 | 1 | - | LUSC,COAD,LIHC,READ | ENSG00000230082 | ENST00000431558 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.3910 | 114 | - | UCEC,LUSC,COAD,LIHC,READ | ENSG00000230082 | ENST00000431558 | PKD2 | ENSG00000118762 | ENST00000508588 | -0.1268 | 1 | - | UCEC,READ | ENSG00000230082 | ENST00000431558 | PKD2 | ENSG00000118762 | ENST00000502363 | -0.5900 | 535 | - | UCEC,READ |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000230082.1 | ENST00000431558.1 | 56 | 57 | 227 |
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