 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ANKS3,RBBP8NL,TRPM2,NEK8,CCNL2,C21orf58,CCDC24,C1orf159,FBXL6,CNKSR1,SETD4,CAPN10,NDUFV3,CFAP298,DUS1L,RABEP2,RTKN,HDAC10,RHPN1,NAT9 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000230061 | ENSG00000109065 | NAT9 | BLCA,COAD,ESCA,STAD,UCS | COAD | | | ENSG00000230061 | ENSG00000130701 | RBBP8NL | BLCA,COAD,READ,STAD,UCEC,UCS | BLCA,COAD,READ,UCEC | | | ENSG00000230061 | ENSG00000142185 | TRPM2 | BLCA,BRCA,COAD,ESCA,LAML,LUSC,OV,PRAD,READ,SKCM,STAD,UCEC,UCS,UVM | BLCA,BRCA,COAD,LUSC,PRAD,READ,STAD,UCEC | | | ENSG00000230061 | ENSG00000142675 | CNKSR1 | BLCA,OV,STAD,UCEC,UCS | BLCA,UCEC | | | ENSG00000230061 | ENSG00000158106 | RHPN1 | BLCA,COAD,ESCA,STAD,UCS,UVM | BLCA,COAD,STAD | | | ENSG00000230061 | ENSG00000182325 | FBXL6 | BLCA,READ,STAD,UCS,UVM | BLCA,READ | | | ENSG00000230061 | ENSG00000221978 | CCNL2 | BLCA,COAD,ESCA,UCEC,UCS | BLCA | | | ENSG00000230061 | ENSG00000114993 | RTKN | COAD,ESCA,LUSC,STAD,UCS | COAD,LUSC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000230061.2 | ENST00000423310.2 | 124 | 156 | 527 | | ENSG00000230061.2 | ENST00000456880.1 | 128 | 26 | 412 |
|
