 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | NDUFB10,MRPL52,IDH3G,BLOC1S1,FAAP100,C11orf1,DUT,NDUFS6,ARL16,PYM1,TCEA2,NUDT16L1,GLI4,CFDP1,TRMU,PRPSAP2,C15orf61,MCRS1,CTBP1,MRPS26,SH2B1,CIRBP,SNRNP25,PET100,IMP3,NICN1,CHCHD5,IP6K2,PPOX,DYNC2I2,CDPF1,COQ5,KAT8,SNF8,ZSWIM7,PPP2R3B,SLC25A11,HINT2,NPRL3,ACD,C1orf35,XAB2,MTIF3,TIMM17B,CDK5RAP1,B3GAT3,MARCHF9,BUD23,BANF1,MRPL28,DCAF8,ZCWPW1,NPRL2,KLHDC4,EIPR1,HPF1,LIN37,STK16,CENATAC,CLK3,SMUG1,VPS9D1,IFT27,TRAPPC2L,GFER,HIRIP3,NARF,PHKG2,PMF1,SURF1,ZC3HC1,TMEM175,NUBP2,MIEN1,SWSAP1,COA3,LSM5,RFXANK,SGSM3,PPIH,CENPT,MRPL24,COG4,DUS2,GKAP1,DHRS12,ZMAT5,MRM1,MICOS13,TAZ,SUGP1,SPG7,STX10,NAA80,ANAPC7,KAT2A,UBL7,ARMC5,ACBD4,NAA38,USE1,CYB5D2,RCCD1,PLA2G6,RNPS1,ERAL1,TBL3,UQCRC1,UQCC2,RPL36AL,CWC15,COX17,POLG2,ATP5MJ,ENDOV,MST1,AAAS,SSU72,DPY30,LAS1L,UBL5,PPIE,FAM50A,NELFE,ELP6,WDR83,METTL23,USF1,CXXC1,C17orf75,ALKBH7,GABPB1,ERMARD,DHPS,RPAIN,STX8,PCED1A,BABAM1,ACYP1,TUSC2,GEMIN6,ING4,PIH1D1,ELP5,PGP,CTU2,MRPS15,HDAC10,HEXIM2,DDX49,SCRN2,PPP1R3F,INO80E,ANKS3,NOXA1,PEX16,C3orf62,SMDT1,YJU2,PQBP1,PIGQ,LENG1,TMEM186,TEDC1,TADA2A,NDUFA2,BORCS6,C12orf76,PRMT7,ZFYVE19,COX4I1,ATP5PD,SGF29,TIGD1,C12orf73,ECSIT,FUZ,COA8,ESS2,DYRK4,THAP3,GEMIN2,VPS28,TRPT1,MOB2,TSEN54,PSPN,ATG4B,SERP2,HEMK1,COASY,STMN3,MRPL57,ARFRP1,CD2BP2,DCUN1D2,CIAO2B,MCRIP2,TSSK6,ALKBH4,PTOV1,IFI27L1,PCSK4,TMA7,PAM16,CCS,MRPL27,NDUFAF5,MYL6B,TPRKB,MYG1,ABHD10,PSMC5,NEDD8,NDUFB1,DUSP28,NAT9,POP5,BOLA1,ACOT8,TSR3,ABHD14A,YPEL3,PROCA1,THAP8,NUDCD2,LUC7L,SAP30BP,BCDIN3D,COA5,RPA3,HEXD,UCKL1,SDHAF2,FKBP3,EEFSEC,SCAND1,IDH3B,ATP5MC2,C14orf93,DPH7,PSME3IP1,ANAPC11,PDCD6,DGCR6L,UBXN11,CCDC12,CEP131,PTRHD1,EAPP,DDX41,HINFP,XPA,RSAD1,FASTK,ATPAF2,SIRT6,MCRIP1,RALY,CCDC51,SPAG7,PCYT2,SIRT7,MVD,FAM3A,ATP5IF1,IMMP1L | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DCAF8,SGSM3,DPH7,C14orf93,TBL3,GLI4,THOP1,COG4,DHPS,HDAC10,C19orf73,ECSIT,EID2B,SWSAP1,OXLD1,DUS1L,FASTK,RNF113A,MRPL52,STK16,COX7C,TRMU,PQBP1,NARF,TADA3,HEMK1,ARL16,E4F1,KLHDC4,NICN1,PSMB6,AIP,DYRK4,TIGD1,PDCD6,ING4,GPANK1,FKBPL,CEP131,YPEL3,USF1,PIH1D1,COX6A1,PRPF3,ALKBH4,MCRS1,GFER,NDUFB1,TIMM17B,THAP3,ZCWPW1,VPS28,DCUN1D2,TUSC2,MRPL24,ACD,HINT2,OCEL1,C3orf62,SLC25A14,BANF1,QTRT1,C17orf75,BLOC1S1,C14orf2,CFDP1,TSEN54,MARCH9,TBKBP1,APOPT1,NT5M,ZSWIM7,EAPP,TMEM256,PCSK4,CCDC130,SDHAF4,IFI27L1,C12orf10,PPIE,ATPIF1,PROCA1,IDH3B,FAM195B,C12orf73,BABAM1,POP5,SLC25A11,SGF29,ARIH2OS,RBM6,ERMARD,CIRBP,TAZ,KCTD2,COQ5 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | OSMR,IQGAP1,FNDC3B,ITGAV,SSH1,ACTN4,ECE1,KPNA6,STAT3,TGOLN2,CAP1,ZYG11B,MFSD14A,CYFIP1,TUBB6,SNX6,MYH9 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000229980 | ENSG00000167967 | E4F1 | ENSG00000204237 | OXLD1 | 5 | KICH,KIRP,LGG,PRAD,THCA | | ENSG00000229980 | ENSG00000167967 | E4F1 | ENSG00000126768 | TIMM17B | 5 | KICH,KIRP,LGG,PRAD,THCA |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000229980.4 | ENST00000416263.3 | 137 | 411 | 1 | | ENSG00000229980.4 | ENST00000523470.1 | 172 | 816 | 298 | | ENSG00000229980.4 | ENST00000514358.1 | 94 | 264 | 545 | | ENSG00000229980.4 | ENST00000519432.1 | 103 | 523 | 212 |
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