lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | PPM1K,SMIM12,PLEKHO1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000229953 | ENST00000448869 | exon_skip_44998 | chr10:110132304-110132400 | -11.96 | -0.1514 | ADD3 | ENST00000356080 | In-frame | ENSG00000229953 | ENST00000448869 | exon_skip_114200 | chr14:73279280-73279424 | -22.34 | -0.1816 | NUMB | ENST00000355058,ENST00000555238 | In-frame | ENSG00000229953 | ENST00000448869 | exon_skip_423795 | chr4:55888887-55888932 | -7.71 | -0.2487 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | ENSG00000229953 | ENST00000448869 | exon_skip_461111 | chr6:90544551-90544632 | -11.59 | -0.1610 | MAP3K7 | ENST00000369329 | In-frame | ENSG00000229953 | ENST00000448869 | exon_skip_325891 | chr2:62987930-62988038 | -8.89 | -0.1125 | EHBP1 | ENST00000263991 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000229953 | ENST00000448869 | exon_skip_21610 | chr1:9737497-9737554 | -9.93 | -0.1910 | CLSTN1 | ENST00000377298 | In-frame | ENSG00000229953 | ENST00000448869 | exon_skip_24063 | chr1:31670601-31670646 | -12.63 | -0.3508 | COL16A1 | ENST00000373672 | In-frame | ENSG00000229953 | ENST00000448869 | exon_skip_33516 | chr1:156938417-156938513 | -15.88 | -0.2206 | ARHGEF11 | ENST00000361409 | In-frame | ENSG00000229953 | ENST00000448869 | exon_skip_337919 | chr2:27445744-27445843 | -15.36 | -0.2021 | IFT172 | ENST00000260570 | In-frame | ENSG00000229953 | ENST00000448869 | exon_skip_376144 | chr3:100311832-100311877 | -6.59 | -0.3468 | TBC1D23 | ENST00000394144 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000229953 | ENST00000448869 | PLEKHO1 | ENSG00000023902 | ENST00000369126 | -0.2524 | 572 | - | READ | ENSG00000229953 | ENST00000448869 | PPM1K | ENSG00000163644 | ENST00000508256 | -0.9778 | 497 | - | CHOL,KIRC,KIRP,LUSC |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000229953.1 | ENST00000448869.1 | 231 | 2451 | 3146 |
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