 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RDX,SPAG9,C6orf89,KRCC1,PEX2,HELQ,PUM1,CMTM4,XRN1,POP1,ERI2,USP22,SLC25A32,PRPSAP2,GLYR1,DNAJC27,ANAPC1,WDR89,RB1CC1,TRIQK,IPP,C1orf56,CCDC88A,SUGP2,UBQLN4,TXNDC16,FBXL4,SLF2,RFC1,ARL2BP,TMEM184C,FAM193A,POLR3D,HLTF,SENP1,WWP1,ZNF24,HSDL1,UBE4A,PIGP,GDAP1,ZBED4,WDCP,PIGW,SLC25A12,BCL7A,NBN,SLC25A40,WWC2,WDR5B,TP53INP1,ST7L,KAT6A,NOP9,FAM200A,HIRIP3,ACAD8,LZTFL1,COG6,STRBP,RNF38,VIRMA,LYRM2,ALDH5A1,SUMF2,POLR2K,CLPX,KIAA1614,NMNAT1,USP30,PARG,FAM133B,HBS1L,RPAP1,IBTK,SETD2,UBA2,SIN3A,RANBP6,CREB1,SLC2A11,SUDS3,MED20,MAPK8IP1,PPP1R3E,SDHC,PPIP5K2,DPY19L4,CAPN7,THEM6,GIT2,TRIP4,SCYL3,FAM220A,ADD3,CYB5D2,XPO7,MARS2,ZFP1,VPS35L,GZF1,NCBP1,FAM219B,RGP1,ARID4B,ASH1L,TRIM68,MPLKIP,CLOCK,LYPLAL1,CASC3,PTAR1,AP3M2,SMC2,PSIP1,CEP89,FAN1,UBE3A,TOP2B,CPSF7,MOCS3,ESRP1,SELENOP,TRIM37,THOC2,ACAD10,ZBTB6,AGBL5,GABPB1,C3orf18,ACYP1,FBXO38,CASP9,RFX7,MTFMT,ACADM,SYPL1,MAP7,HCFC2,FOXJ3,PRKACB,CBX1,MIER1,NCOA6,TTC21B,NPAT,RAF1,HERPUD2,AP1G1,ANKRD11,ARID1A,C4orf46,RRM2B,ILF2,RRS1,PNMA8A,UTP23,ZADH2,PRMT9,ZFP62,GON4L,MDN1,TRAM1,SOCS4,CERS6,ANAPC5,ZBED8,TMEM70,CHD9,ZNF45,DHODH,YTHDC1,TOPBP1,COQ7,C22orf39,COQ6,PIGN,SECISBP2L,DCTN5,VGLL4,GUF1,TFCP2,TYW3,MLH1,ETFDH,DHX35,INTS2,SMC1A,NFYA,ADHFE1,UBXN2A,TAF5L,TSSK6,RNF111,HIF1AN,TNKS,FIGNL1,NR2C2,PAN2,LRTOMT,FUT10,TASOR,R3HDM1,MOAP1,SMARCAD1,ZNF14,RMI1,MBTPS1,SCRN3,STAG2,PKN2,BRD2,XPO1,NRDE2,METTL4,FITM2,ATG2B,DCLRE1A,HUWE1,MIOS,MBTD1,SP3,DNASE1,SEPSECS,COMMD8,B3GALNT1,IFT122,TMEM50B,TTC3,CEP192,KDM1A,PAFAH1B1,SEC24C,LYSMD1,AHDC1,KAT14,ACACA,PALB2,PEX10,ABCE1,AKAP1,ZFP3,DNAJA3,JKAMP,NARS2,MARCHF6,SWT1,BRD3,EIF4ENIF1,TMEM64,CUL3,LTN1,ZMYM1,RNF214,IQCC,CASTOR3,ARHGEF9,KBTBD6,TMEM168,HIBADH,OARD1,PIK3R4,TMEM254,ATM,CEP20,TRMO,SNX19,EMC2,ILF3,NCOA4,GNE,GLI4,BPHL,CDK13,LURAP1,CAND1,SLC25A20,FBXL3,TRAF6,NICN1,CSNK1G1,CEP57,TMEM14B,MIB1,CEP68,PPOX,BBOF1,DIP2C,RC3H2,KLHL15,RELCH,DARS2,RSBN1,MAZ,VEZF1,IFTAP,GSK3B,PIBF1,GGH,PIGH,ICE2,SMCR8,MRPL49,BIVM,CNOT6L,ADGRA3,TCAIM,PHF7,DDX55,COG8,MRPS28,STK3,KRIT1,DCAF7,ZXDA,COG5,BANP,ACYP2,GCFC2,WDR59,SCO1,ZNF25,VPS50,ASF1A,UBR1,WAPL,CHD8,AGA,SESN3,LANCL1,ACTR8,KIAA1143,ZZZ3,DENND6A,RALGPS2,C2CD3,IFT140,UNG,OXR1,TMED8,IFT74,AP5M1,SPACA9,CROT,ATXN10,PUF60,SETX,NECAB3,RAB14,SMG1,UFL1,MTURN,PARS2,KANSL2,PHC1,METAP1D,RAI1,XIAP,ELP4,MFSD9,TCTA,TMEM251,PUS7L,MED6,SLC39A9,MTOR,UTP14C,NUDCD3,IFT80,BBS2,RFWD3,NEK9,ELMO1,EP400,CPLANE2,SPECC1L,NATD1,METTL23,KIAA0586,RTF1,LRIG2,PPP1R13B,PARP2,FBXO3,ABHD18,LCMT2,MAF1,REV3L,OSBP,TMED10,SMCHD1,SLX4,HIP1,SP2,AFDN,ANGEL1,SMYD4,UBAP2L,RPRD1B,ATP6V1C1,QRSL1,BRF1,PRKD3,DTWD2,ACIN1,ZNF41,ZC3H8,METTL16,TNRC18,BPNT2,THAP1,ENOSF1,ATE1,DZIP3,TTC8,SRBD1,CYB561D1,MBLAC2,PXMP4,MEX3A,FNTA,HEATR5A,COA1,C6orf120,KCTD18,TADA2A,GTF2A1,CEP85,KIAA1958,NUBPL,SYNRG,BOD1L1,TOX4,MLLT10,TSTD2,RNF31,MINDY3,G2E3,MED23,NVL,FTCDNL1,ATG14,SQLE,MTIF2,TSPYL5,TSNARE1,CBLL1,HEMK1,NCKAP1,PRKD1,HERC1,ZFR,ATRN,BTBD7,KIAA0319L,TMEM218,LDAH,CCDC25,ARHGAP39,TRIM4,WAC,CNOT7,EHMT1,ZNF862,SLC23A2,TP53BP1,FAM171A1,ARID4A,SBF2,NT5C2,LPP,LRBA,VPS54,LYRM7,ELP1,SMAD4,TIGD2,PAXIP1,TXNRD3,TTC37,UEVLD,VCPIP1,SYNE2,MKKS,CBX5,NSL1,KIAA1549,EPM2AIP1,TTC12,NAA35,ECI2,ANKMY2,SRR,FANCC,FBXO30,GTF3C4,MPDZ,CSTF2,MPPE1,HECTD4,EXOC7,TFDP2,TPR,NADK2,HPS4,MCPH1,XPO5,UNC119B,ARHGAP42,ZSWIM5,NUCKS1,ZNF10,GOPC,PCYOX1,LRRC14,DET1,NCOA2,ABCB10,SPRYD4,TNPO3,INVS,PREPL,RCBTB1,PRKAB2,AFG3L2,RALGAPA1,MTMR10,KLF12,EIF3A,B3GALNT2,ANGEL2,ATPSCKMT,WDR11,OSBPL9,NIPSNAP1,ROCK1,CSPP1,TIGD5,KDM3B,FAM214A,MED13L,RBM23,METTL15,ARID2,LACTB2,SMG6,STAM2,TTC5,UBTF,VPS13B,DTD2,NEK4,MKS1,NUP153,DBR1,SPIN3,DHFR,TASP1,IFT88,TBP,STARD7,SLX4IP,GABPA,SUV39H2,GTF3C3,TTC30B,ZC4H2,DHFR2,XPC,EFCAB7,PDPK1,TCAF1,PPM1A,ERLIN2,TRPS1,INCA1,CPNE3,GFM2,UBXN7,CNOT4,SON,DOP1A,TATDN1,KANSL3,KMT2C,DHX57,PITRM1,DSCC1,STAU2,SIKE1,PHF8,MARCHF8,MPHOSPH9,YTHDF3,TDP1,BPNT1,HECTD1,POM121C,COX18,SMU1,PTCD3,INTS7,ORC3,SCRIB,ATP6V1H,UBE2W,PHTF2,NFRKB,ZNF91,CHD6,ZFP91,NUP160,TMEM209,BRWD1,CNOT1,NIN,TRAPPC11,OPHN1,ABCC4,TCFL5,NAPEPLD,C12orf65,SPATA6,TUBGCP5,PDCD2,TERF2,PTPN3,C1orf131,GLE1,RO60,SLC7A6OS,TBCK,BBS10,KLHL9,MLH3,SP4,SPRTN,SMARCC1,SETD6,TBC1D4,KANSL1L,TTC30A,UBR5,PRIM1,CDC23,TRAPPC9,TRAM1L1,ZNF34,ERMARD,HDHD2,ANKRD46,WDFY3,ATP8A1,SRRM2,HEATR5B,VPS41,DCAF17,WHRN,PSKH1,EPC1,SETD3,SNW1,LCOR,SAP30L,DLG5,CEP44,CENPC,KLC4,DBT,HERC2,OTUD6B,DEPTOR,GON7,TTI2,CIAO1,POLR2D,SRPK2,ANKRD27,USP28,PSPH,USP19,ASB7,C2orf49,MMACHC,VMAC,ORC5,TGS1,FCHSD2,DCAF12,NUP88,CDC40,CCDC121,EPG5,KRR1,MADD,RBM45,EPM2A,PEX3,NFXL1,PRDM2,WRN,HLCS,YAE1,NSMCE2,FAM149B1,PMS1,QRICH1,HOMEZ,NSMAF,BAZ1B,APEX1,ADAM17,VIPAS39,CYP7B1,DDX31,METTL6,ABI1,PRUNE1,PPP4R3A,BAG4,RPS6KC1,RMDN1,FCF1,NSUN6,KANSL1,ZNF3,FAM161B,ZMYM3,TMEM245,DPH1,SNRNP200,CRCP,TMEM68,PARP1,RUSF1,RBBP5,SZT2,FAM13B,MYO18A,ABHD10,PRKDC,STX17,GIN1,FASTKD2,HELZ,C8orf37,DYM,GTF3C1,ARFGEF1,ELF2,NTAQ1,SRRD,CRAMP1,TMEM65,ZNF43,WDR6,COA5,CDC14B,NIF3L1,GAPVD1,BBS4,C14orf93,COX10,THNSL1,SNX13,PMS2,TMEM131,AREL1,LZIC,USP16,TMX4,DPH5,REV1,TPP2,FZD6,BROX,MFAP3,GTF2H3,KDM1B,ADAT1,THTPA,SOS1,SMIM19,WBP1,JMY,CDYL,ERMAP,HCFC1,RAD17,ADAL,TRIT1,TONSL,WDR37,SEC22C,LYPLA1,NUP133,PRMT5,PELI2,FPGT,DSTYK,DNAAF2,ZNF16,EEF2KMT,USP34,MTSS1,AP3M1,TMEM167B,TRIM66,C15orf61,KIF5B,TAF9B,INTS14,TATDN3,SCFD1,MSL2,POLR1B,MDC1,POT1,EXOC5,EIF5,PYGO2,NRF1,FAM120B,RFX5,ZNF2,RRNAD1,ZXDC,AIMP2,KAT8,INTS3,COQ5,SPTLC1,PDS5A,FNDC3A,PIGL,LNPK,AZIN1,ZC3H7A,AASDH,NDUFAF6,ACBD5,OSCP1,RBM28,ZNF74,BRI3BP,IKZF5,TOR1AIP1,GRHL2,SF3B1,ANKIB1,ZBTB5,BCLAF1,SNX29,TTC28,VTI1B,NUP42,HACL1,RRP1B,PTCD2,KMT2E,CLASP2,DDX59,COPS5,C2orf42,DCAF16,GOLGA1,SIAE,EXTL2,SNX16,OSGEPL1,PEX1,S100PBP,RAB11FIP2,ANKRD52,MTPN,USP24,AGPAT5,KAT6B,SOS2,FBXW8,TOGARAM1,IMMP2L,ZC3H3,SUPT16H,PDSS2,CHTF8,RNF216,IQCD,USP7,NUDCD1,AKAP10,PCNT,YEATS2,H2AZ2,ADNP,WDSUB1,NCOA5,ARID1B,FUBP1,DCAF5,MTBP,PRIMPOL,ERC1,TCF20,MMUT,GEMIN4,TRIM33,ACTR3B,SPTLC2,WDR20,LRP6,NBAS,SCAPER,LIPT2,POLR2B,THAP6,DHX15,DCAF1,DDX17,GGPS1,NNT,DGLUCY,POLR3A,C12orf66,BRF2,HSF1,SLC7A6,SLC20A2,AQR,DCAF13,RSBN1L,ELOC,ZDHHC2,EPB41,DHX33,LIAS,DYRK1A,ASXL2,NINL,PTPN21,MARF1,CTDSPL2,TAF2,GNPDA2,INO80,TRIP11,TRPM7,NEK1,SLC25A17,MCM8,LIN52,IFT46,CDAN1,TRAPPC8,RAD21,COIL,GPALPP1,HAUS4,MAP4K3,COX15,ERV3-1,MKLN1,UBFD1,PHIP,PFAS,WDR31,CPSF2,VPS52,RSPRY1,DLG1,TIGD1,NSD2,TRIM52,NCBP3,DUS4L,PPP1R21,DEPDC5,MTFR1L,NLRX1,FBXO11,ATP6V1E2,LYRM1,LMBR1,PYCR3,SALL2,ANKRD16,TTC32,TCEA1,ZMAT1,EIF3H,ATAD1,HP1BP3,TMEM230,VPS13C,TAPT1,CBR4,WASHC5,RAB2A,DIDO1,APPBP2,RABGAP1,FKTN,SETD4,CEP41,C1orf109,EIF3E,CREBBP,RBM48,TYSND1,PIKFYVE,DUSP28,BOLA1,DHX36,MKRN1,MFAP3L,BCDIN3D,ZCCHC7,IMPA1,TRMT61B,SRCAP,ZNF84,PRPSAP1,LDB1,ARHGEF12,BICRAL,TUBD1,PEX5,C17orf80,ARMC1,PTDSS1,FRYL,PCMTD1,KLHL7,MRPS14,JMJD1C,TBC1D31,ARHGAP21,KIF13A,TSC1,SPG11,DENND11,NAE1,DCAF11,LRRC40,VPS37A,TTC33,NCAPD3,TBC1D5,ASB8,PRPF4B,CFAP97,USP13,ATF2,TRMT10A | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | E2F5,USP42,TRIM33,C14orf93,TMEM164,NSL1,DNAAF2,FAM220A,NAE1,PRUNE,PAFAH1B1,KIZ,VPRBP,OSGEPL1,SETD2,ZMAT1,WDR60,SMARCA5,SMAD1,SLC23A2,CEP192,REST,LIPT2,ZNF3,DLG5,ANKRD46,C6orf89,METTL6,FAN1,CHRAC1,ITCH,SMG1,FAM173B,FAM120C,NCOA6,STK3,C3orf18,ABCB10,KBTBD6,RPAP1,KIAA0355,CASP8AP2,HEMK1,MAP7,TBP,ATP8A1,MSL2,AGO2,IFT140,SLK,NCBP3,EP300,NIPSNAP1,LURAP1,PARP2,DIEXF,THOC2,ADAT1,FAM185A,SETD6,ATP2C1,UBXN7,LCOR,COA1,LDAH,NAPEPLD,HOMEZ,KLHL7,PMS2,UBE2V2,NLK,NCOA2,TATDN3,RSPRY1,FAM133B,ACTR3B,CEP89,ENOSF1,C12orf66,ZC3H6,OSCP1,ARID2,KDM1B,GNE,C2orf42,GLTSCR1L,C14orf79,PHACTR4,MFN1,NSUN4,DBR1,TMEM131,PIK3R4,ASH1L,EXD2,PFAS,GAB1,TRMO,SMU1,REV3L,SMG6,ALDH5A1,USP28,XIAP,MLLT10,TRAPPC10,MPHOSPH9,DCAF5,SETD4,NFX1,NT5M,SETX,PRKD3,ELAC1,NCOA1,VPS50,GIT2,RALGAPA1,PALB2,KIAA0196,PRMT9,NEU3,ANGEL2,POLR3A,DPH1,CDC23,KAT2B,ARIH2,CDK13,MUT,PCCB,WDR35,GTF2I,LACTB2,S100PBP,TRIT1,MTIF2,PIGV,TFCP2,SRPK2,CPSF7,FOXK1,ARIH2OS,CCNY,L2HGDH,TMEM50B,RNF8,DHTKD1,ERI2,FAM175B,ZBTB6,UBTF,NEK4 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | S100A11,KLF16,PLAUR,MVP,CTSD,ANXA2,RRAS,CD63,RHOG,IFITM3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_201258 | ENSG00000228801.5 | chr8 | 51900001 | + | antisense | RP11-110G21.1 | ENST00000521612.1 | antisense | RP11-110G21.1-001 | | LncEditing_201411 | ENSG00000228801.5 | chr8 | 51913107 | + | antisense | RP11-110G21.1 | ENST00000520357.1 | antisense | RP11-110G21.1-004 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000228801 | LncEditing_201258 | SARC | chr8_51900001_+ | 1.701995e+00 | 1.217570e+00 | 2.069440e+00 | 4.042333e+00 | 5.292208e-05 | 6.140959e-05 | UP | | ENSG00000228801 | LncEditing_201411 | GBM | chr8_51913107_+ | 2.427959e+00 | 1.634591e+00 | 1.751885e+00 | 5.450960e+00 | 5.009875e-08 | 1.213470e-07 | UP | | ENSG00000228801 | LncEditing_201258 | BLCA | chr8_51900001_+ | 2.115199e+00 | 1.397756e+00 | 1.673132e+00 | 5.693386e+00 | 1.245445e-08 | 1.851153e-08 | UP | | ENSG00000228801 | LncEditing_201258 | LGG | chr8_51900001_+ | 2.365896e+00 | 1.762364e+00 | 2.353636e+00 | 6.075974e+00 | 1.232374e-09 | 1.790239e-09 | UP | | ENSG00000228801 | LncEditing_201258 | LUSC | chr8_51900001_+ | 2.789955e+00 | 1.574998e+00 | 1.212280e+00 | 6.751536e+00 | 1.462883e-11 | 1.977034e-11 | UP | | ENSG00000228801 | LncEditing_201258 | KIRP | chr8_51900001_+ | 2.060421e+00 | 1.604181e+00 | 2.769298e+00 | 4.056953e+00 | 4.971706e-05 | 6.508152e-05 | UP | | ENSG00000228801 | LncEditing_201258 | THCA | chr8_51900001_+ | 1.587485e+00 | 9.662767e-01 | 1.396190e+00 | 6.303001e+00 | 2.919377e-10 | 5.539563e-10 | UP | | ENSG00000228801 | LncEditing_201258 | OV | chr8_51900001_+ | 2.860879e+00 | 2.043619e+00 | 2.060443e+00 | 5.971574e+00 | 2.349752e-09 | 3.747783e-09 | UP | | ENSG00000228801 | LncEditing_201411 | OV | chr8_51913107_+ | 2.905128e+00 | 1.792771e+00 | 1.435934e+00 | 9.544136e+00 | 1.372475e-21 | 7.170401e-21 | UP | | ENSG00000228801 | LncEditing_201258 | TGCT | chr8_51900001_+ | 2.742692e+00 | 1.683709e+00 | 1.420556e+00 | 3.826344e+00 | 1.300605e-04 | 1.779088e-04 | UP | | ENSG00000228801 | LncEditing_201258 | STAD | chr8_51900001_+ | 1.945779e+00 | 1.210815e+00 | 1.461200e+00 | 5.619496e+00 | 1.915155e-08 | 2.673003e-08 | UP | | ENSG00000228801 | LncEditing_201411 | STAD | chr8_51913107_+ | 1.969424e+00 | 1.118773e+00 | 1.225705e+00 | 9.070741e+00 | 1.182103e-19 | 4.935194e-19 | UP | | ENSG00000228801 | LncEditing_201258 | PRAD | chr8_51900001_+ | 2.419349e+00 | 1.608514e+00 | 1.698109e+00 | 7.322593e+00 | 2.432251e-13 | 5.726934e-13 | UP | | ENSG00000228801 | LncEditing_201258 | ESCA | chr8_51900001_+ | 1.663073e+00 | 1.209239e+00 | 2.175086e+00 | 3.700453e+00 | 2.152151e-04 | 2.613504e-04 | UP | | ENSG00000228801 | LncEditing_201411 | ESCA | chr8_51913107_+ | 1.805135e+00 | 1.146099e+00 | 1.525844e+00 | 5.861168e+00 | 4.596229e-09 | 1.059813e-08 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000228801 | LncEditing_201258 | -3.782456e-01 | 6.205195e-03 | 6.902035e-03 | | ENSG00000228801 | LncEditing_201258 | -4.259688e-01 | 2.381218e-02 | 2.676405e-02 | | ENSG00000228801 | LncEditing_201411 | -5.623777e-01 | 1.298083e-04 | 2.849960e-03 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000228801 | ENSG00000196378 | ZNF34 | ENSG00000133740 | E2F5 | 8 | COAD,DLBC,KICH,KIRP,LGG,LUSC,READ,SKCM | | ENSG00000228801 | ENSG00000196378 | ZNF34 | ENSG00000100802 | C14orf93 | 5 | DLBC,GBM,HNSC,PAAD,THCA | | ENSG00000228801 | ENSG00000196378 | ZNF34 | ENSG00000088970 | KIZ | 5 | DLBC,KICH,LGG,PAAD,THCA | | ENSG00000228801 | ENSG00000196378 | ZNF34 | ENSG00000186106 | ANKRD46 | 10 | COAD,DLBC,HNSC,KICH,LGG,PAAD,READ,SKCM,STAD,THCA | | ENSG00000228801 | ENSG00000196378 | ZNF34 | ENSG00000104472 | CHRAC1 | 6 | COAD,DLBC,HNSC,READ,SARC,SKCM | | ENSG00000228801 | ENSG00000100207 | TCF20 | ENSG00000140396 | NCOA2 | 5 | ACC,KIRP,PCPG,SARC,TGCT | | ENSG00000228801 | ENSG00000167232 | ZNF91 | ENSG00000140396 | NCOA2 | 5 | KIRP,LGG,PCPG,SKCM,TGCT | | ENSG00000228801 | ENSG00000167232 | ZNF91 | ENSG00000188177 | ZC3H6 | 5 | KIRP,LGG,PAAD,SKCM,TGCT | | ENSG00000228801 | ENSG00000196378 | ZNF34 | ENSG00000188177 | ZC3H6 | 5 | KICH,KIRP,PAAD,SARC,THCA | | ENSG00000228801 | ENSG00000167232 | ZNF91 | ENSG00000112624 | BICRAL | 5 | KIRP,LGG,PAAD,SKCM,TGCT | | ENSG00000228801 | ENSG00000114126 | TFDP2 | ENSG00000263001 | GTF2I | 5 | ACC,GBM,KIRC,LAML,LGG | | ENSG00000228801 | ENSG00000167232 | ZNF91 | ENSG00000263001 | GTF2I | 5 | KIRP,LGG,PAAD,PCPG,TGCT |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000228801.5 | ENST00000518942.1 | 41 | 96 | 221 | | ENSG00000228801.5 | ENST00000423716.1 | 113 | 571 | 230 | | ENSG00000228801.5 | ENST00000520357.1 | 207 | 113 | 736 | | ENSG00000228801.5 | ENST00000521612.1 | 66 | 198 | 1 |
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