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lncRNA: ENSG00000228221 |
Summary for LINC00578 |
Gene summary |
Gene information | Ensembl ID | ENSG00000228221 | Gene symbol | LINC00578 |
Gene name | long intergenic non-protein coding RNA 578 | |
HGNC | 43807 | |
Entrez ID | 100505566 | |
Gene type | lincRNA | |
Synonyms | 03q26.32|LINC00578 | |
UniProtAcc |
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Structure and expression level for LINC00578 |
AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000228221 | 9.779806e+01 | 2.395438e+00 | 2.065492e-01 | 1.159742e+01 | 4.250000e-31 | 4.490000e-30 | UP | BRCA |
ENSG00000228221 | 1.075542e+02 | 1.219257e+00 | 1.827807e-01 | 6.670602e+00 | 2.550000e-11 | 1.320000e-10 | UP | LUAD |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
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lncRNA-Protein interaction for LINC00578 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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