 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | CTNNBIP1,WRAP73,MORN2,DUT,ARL16,NELFB,PRPSAP2,POMT1,CIRBP,STMP1,WDR83OS,NRF1,RRNAD1,LYSMD4,KAT8,BCS1L,MKS1,TRAPPC12,OSCP1,BCL7C,BIVM,ZCWPW1,C20orf96,SNRPA,NARF,LSM5,INTS11,NT5C3B,CENPT,STX10,NAA80,CDK20,LRRC23,CSTF3,ECHDC2,CYB5D2,BEND5,SPATA6,NFIA,ENDOV,SSU72,CEP89,METTL23,GLT8D1,CXXC1,ZNF34,ERMARD,TRIM45,ACYP1,ANKS3,RBM42,PEX11G,PDAP1,TIGD1,MBD3,PEMT,ARMC7,MOSPD3,GEMIN2,HMGN1,TTC32,TSEN54,VPS4A,NSUN6,ZNF3,TMEM218,CZIB,SYF2,LNP1,RPA3,C14orf93,DPH7,PSME3IP1,NSMCE4A,NDUFV3,DGCR6L,XPA,PLXNB1,ERCC5,ACAP3,IQCC | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000227199 | ENST00000456775 | exon_skip_421737 | chr4:3428557-3428711 | -16.56 | -0.1191 | RGS12 | ENST00000336727,ENST00000344733 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000227199 | ENST00000456775 | exon_skip_111863 | chr14:23565815-23565892 | -16.10 | -0.2368 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000227199 | ENST00000456775 | exon_skip_494079 | chr8:144099080-144099205 | -31.13 | -0.2937 | SHARPIN | ENST00000398712 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000227199 | ENSG00000104915 | STX10 | ACC,GBM,KICH,KIRP,LGG | GBM | | | ENSG00000227199 | ENSG00000125449 | ARMC7 | ACC,GBM,KICH,KIRP,LGG | | KICH | | ENSG00000227199 | ENSG00000188010 | MORN2 | ACC,KICH,KIRP,THCA,UVM | | KICH | | ENSG00000227199 | ENSG00000205581 | HMGN1 | ACC,GBM,KICH,KIRP,LGG | GBM | | | ENSG00000227199 | ENSG00000011143 | MKS1 | GBM,KICH,KIRP,LGG,THCA,UCS,UVM | GBM | | | ENSG00000227199 | ENSG00000106330 | MOSPD3 | GBM,KICH,KIRP,LGG,SKCM,THYM,UCS | GBM | | | ENSG00000227199 | ENSG00000164050 | PLXNB1 | GBM,KICH,KIRP,THYM,UVM | | KICH | | ENSG00000227199 | ENSG00000206535 | LNP1 | GBM,KICH,KIRP,THCA,UCS,UVM | | KICH | | ENSG00000227199 | ENSG00000116885 | OSCP1 | KICH,KIRP,SKCM,THCA,THYM,UVM | | KICH | | ENSG00000227199 | ENSG00000121310 | ECHDC2 | KICH,KIRP,THCA,THYM,UVM | | KICH | | ENSG00000227199 | ENSG00000132122 | SPATA6 | KICH,KIRP,THCA,THYM,UVM | | KICH | | ENSG00000227199 | ENSG00000150433 | TMEM218 | KICH,KIRP,THCA,UCS,UVM | | KICH | | ENSG00000227199 | ENSG00000162373 | BEND5 | KICH,OV,THYM,UCEC,UVM | | KICH |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000227199.1 | ENST00000456775.1 | 57 | 458 | 285 |
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