|
lncRNA: ENSG00000226453 |
Summary for LINC02542 |
Gene summary |
Gene information | Ensembl ID | ENSG00000226453 | Gene symbol | LINC02542 |
Gene name | long intergenic non-protein coding RNA 2542 | |
HGNC | 53576 | |
Entrez ID | ||
Gene type | lincRNA | |
Synonyms | LINC02542|06q14.1|RP11-379B8.1 | |
UniProtAcc |
Top |
Structure and expression level for LINC02542 |
AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000226453 | 5.171654e+01 | 1.130825e+00 | 3.607324e-01 | 3.134802e+00 | 1.719699e-03 | 6.059598e-03 | UP | BLCA |
ENSG00000226453 | 4.962391e+01 | 2.922265e+00 | 2.977410e-01 | 9.814790e+00 | 9.720000e-23 | 3.100000e-21 | UP | KIRP |
ENSG00000226453 | 1.515179e+02 | 2.369964e+00 | 1.914510e-01 | 1.237896e+01 | 3.400000e-35 | 4.630000e-34 | UP | LUSC |
ENSG00000226453 | 6.512181e+01 | 1.240678e+00 | 2.294541e-01 | 5.407083e+00 | 6.410000e-08 | 2.370000e-07 | UP | LUAD |
ENSG00000226453 | 4.173924e+01 | 1.147984e+00 | 2.494528e-01 | 4.602011e+00 | 4.180000e-06 | 1.450000e-05 | UP | COAD |
ENSG00000226453 | 5.160625e+01 | 2.145928e+00 | 5.085308e-01 | 4.219859e+00 | 2.440000e-05 | 2.187960e-04 | UP | READ |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
Top |
lncRNA-Protein interaction for LINC02542 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
Top |
|