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lncRNA: ENSG00000226352 |
Summary for PSPC1-AS2 |
Gene summary |
Gene information | Ensembl ID | ENSG00000226352 | Gene symbol | PSPC1-AS2 |
Gene name | PSPC1 antisense RNA 2 | |
HGNC | 52951 | |
Entrez ID | ||
Gene type | antisense | |
Synonyms | PSPC1-AS2|RP11-523H24.3|13q12.11 | |
UniProtAcc |
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Structure and expression level for PSPC1-AS2 |
AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000226352 | 2.091231e+01 | 1.139168e+00 | 2.636792e-01 | 4.320278e+00 | 1.560000e-05 | 1.025670e-04 | UP | BLCA |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
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lncRNA-Protein interaction for PSPC1-AS2 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000226352 | ENST00000423023 | RP11-523H24.3 | ENSG00000054267 | ARID4B | 89.96 | 90.5516 | Q4LE39 | Epi | NA |
ENSG00000226352 | ENST00000423023 | RP11-523H24.3 | ENSG00000181555 | SETD2 | 82.53 | 92.8758 | Q9BYW2 | Epi | NA |
ENSG00000226352 | ENST00000423023 | RP11-523H24.3 | ENSG00000164190 | NIPBL | 65.47 | 93.043 | Q6KC79 | Epi | NA |
ENSG00000226352 | ENST00000423023 | RP11-523H24.3 | ENSG00000084093 | REST | 58.45 | 91.4167 | Q13127 | TF,Epi | ChIP-seq |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000226352 | ENST00000423023 | RP11-523H24.3 | ENSG00000139746 | RBM26 | 65.35 | 91.8179 | Q5T8P6 | RBP | NA |
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