 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CNOT1,PREPL,FAM168B,DSTYK,NEK4,METTL14,PHF6,FAM53C,GSK3B,QKI,ARID1A,ZFYVE16,YLPM1,NAF1,ZMYND11,SENP2,EIF4G3,RDX,TOP2B,DNAJC16,STX17,UBR1,CHD8,S100PBP,FOXJ3,HBS1L,PNPT1,TRIM37,PTPN11,KAT6B,RCHY1,RNF214,PRDM2,HECTD1,NEDD1,IARS1,TUT4,PBRM1,TASOR,ELOA,DNAJC11,HELZ,CLTC,ATRN,MAN1A2,PCYOX1,GMPS,ZFP1,FUBP1,SNX19,CSDE1,KTN1,RIOX2,USP33,ARID1B,PCNX1,TP53BP1,WDR48,STAM,UBR4,SDAD1,KIDINS220,CDC27,NEK9,TFCP2,SMARCA2,CLASP2,APPBP2,TCHP,CLCC1,CCSER2,SLTM,MCC,MTMR12,SUGP2,MFSD14A,SMAD1,ZBED3,POLR2B,PIKFYVE,SSR1,MKRN2,MDC1,C1orf109,UEVLD,DYNC1LI2,KBTBD4,YAP1,C2CD3,MED13,WDR7,SENP6,SSH1,UVRAG,OSBPL8,USP46,ARMC8,SEPTIN2,INVS,KAT7,KLHL5,SIK3,NUP98,KIAA0586,DNAJC24,AZI2,FAM120B,DCAF7,GTF3C4,GTF2A1,ECPAS,RABGAP1,TNPO1,GTF2I,SMAD5,EMSY,EIF4G2,SOS2,THRAP3,LARS2,CLASP1,SEC22C,NCAPD3,GOSR1,PRKAR1A,RANBP2,DCAF17,MAP3K4,RPE,TAF2,TMEM184C,TEX2,RAD17,PLAA,KANSL3,FAM114A2,RABEP1,MED23,EIF2AK4,CPSF2,ATF1,CELF1,CANX,DOCK1,BCKDHB,LATS1,DHX36,HERC1,MCFD2,IBTK,NCAPD2,ZFYVE9,NSD1,SLC39A6,SLC25A51,RAB6A | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000225969 | ENST00000427153 | exon_skip_44853 | chr10:104010815-104010908 | -14.00 | -0.1522 | SLK | ENST00000369755 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_59476 | chr11:57815914-57816001 | -14.43 | -0.2091 | CTNND1 | ENST00000399050 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_114200 | chr14:73279280-73279424 | -26.93 | -0.2207 | NUMB | ENST00000355058,ENST00000555238 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_150188 | chr17:27643524-27643620 | -14.26 | -0.1805 | LGALS9 | ENST00000395473 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_386291 | chr3:108050577-108050602 | -6.46 | -0.3589 | CD47 | ENST00000361309 | Frame-shift | | ENSG00000225969 | ENST00000427153 | exon_skip_423795 | chr4:55888887-55888932 | -7.79 | -0.2291 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_435063 | chr5:66075023-66075230 | -17.89 | -0.1016 | ERBIN | ENST00000284037 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000225969 | ENST00000427153 | exon_skip_90104 | chr12:10709907-10710114 | -30.59 | -0.1672 | YBX3 | ENST00000228251 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_337919 | chr2:27445744-27445843 | -12.35 | -0.1403 | IFT172 | ENST00000260570 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_351122 | chr20:36209487-36209898 | -42.61 | -0.1065 | EPB41L1 | ENST00000338074 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_382356 | chr3:37091466-37091538 | -13.63 | -0.2963 | LRRFIP2 | ENST00000336686 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_460899 | chr6:85538837-85538864 | -3.99 | -0.2347 | SNX14 | ENST00000314673 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_470719 | chr7:117134123-117134192 | -8.84 | -0.1449 | ST7 | ENST00000265437 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_300058 | chr18:79933968-79934022 | -12.18 | -0.3691 | PQLC1 | ENST00000397778 | In-frame | | ENSG00000225969 | ENST00000427153 | exon_skip_514511 | chrX:41555599-41555635 | -7.42 | -0.3092 | CASK | ENST00000378163 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000225969 | ENST00000427153 | BCKDHB | ENSG00000083123 | ENST00000369760 | -0.2282 | 95 | - | CHOL,KIRC | | ENSG00000225969 | ENST00000427153 | BCKDHB | ENSG00000083123 | ENST00000356489 | -0.1139 | 1 | - | CHOL,KIRC | | ENSG00000225969 | ENST00000427153 | PCYOX1 | ENSG00000116005 | ENST00000433351 | -0.1151 | 1 | - | CHOL,KIRP,BRCA | | ENSG00000225969 | ENST00000427153 | SMARCA2 | ENSG00000080503 | ENST00000382186 | -0.8200 | 462 | - | CHOL,KIRP,UCEC | | ENSG00000225969 | ENST00000427153 | MCC | ENSG00000171444 | ENST00000624689 | -0.1046 | 287 | - | CHOL,KIRP,UCEC | | ENSG00000225969 | ENST00000427153 | MCC | ENSG00000171444 | ENST00000514701 | -0.3910 | 1 | - | CHOL,KIRP,UCEC | | ENSG00000225969 | ENST00000427153 | ZFYVE9 | ENSG00000157077 | ENST00000357206 | -0.1278 | 347 | - | KIRP | | ENSG00000225969 | ENST00000427153 | USP46 | ENSG00000109189 | ENST00000508499 | -0.2747 | 507 | - | KIRC,KIRP | | ENSG00000225969 | ENST00000427153 | USP46 | ENSG00000109189 | ENST00000512656 | -0.2232 | 293 | - | KIRC,KIRP | | ENSG00000225969 | ENST00000427153 | NCAPD3 | ENSG00000151503 | ENST00000526422 | -0.1035 | 265 | LUSC,COAD,STAD | - | | ENSG00000225969 | ENST00000427153 | RIOX2 | ENSG00000170854 | ENST00000514314 | -0.1227 | 273 | - | KIRC,KIRP | | ENSG00000225969 | ENST00000427153 | IARS1 | ENSG00000196305 | ENST00000375627 | -0.1258 | 379 | COAD | - | | ENSG00000225969 | ENST00000427153 | DNAJC11 | ENSG00000007923 | ENST00000377577 | -0.1180 | 1 | - | KIRC,KIRP | | ENSG00000225969 | ENST00000427153 | DNAJC11 | ENSG00000007923 | ENST00000451196 | -0.1039 | 102 | - | KIRC,KIRP | | ENSG00000225969 | ENST00000427153 | LARS2 | ENSG00000011376 | ENST00000414984 | -0.5482 | 399 | - | CHOL,KIRC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000225969.1 | ENST00000427153.1 | 149 | 2030 | 1581 |
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