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lncRNA: ENSG00000225791

Summary for TRAM2-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000225791
	Gene symbol	TRAM2-AS1
	Gene name	TRAM2 antisense RNA 1 (head to head)
	HGNC	48663
	Entrez ID	401264
	Gene type	lincRNA
	Synonyms	TRAM2-AS1\|06p12.2
	UniProtAcc

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Structure and expression level for TRAM2-AS1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000225791	3.380177e+02	-1.425672e+00	1.920958e-01	-7.421674e+00	1.160000e-13	2.380000e-12	DOWN	CHOL
ENSG00000225791	4.331964e+02	-1.438664e+00	1.529563e-01	-9.405716e+00	5.170000e-21	9.270000e-20	DOWN	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000225791	-6.362467e-01	2.079328e-11	KICH	3.724308e-10
ENSG00000225791	-3.242116e-01	2.396368e-16	KIRC	1.198184e-15

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lncRNA-Protein interaction for TRAM2-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000225791	ENST00000453216	TRAM2-AS1	ENSG00000123636	BAZ2B	82.05	90.4931	Q9UIF8	TF,Epi	Predict
ENSG00000225791	ENST00000453216	TRAM2-AS1	ENSG00000168769	TET2	46.5	91.323	Q6N021	TF,Epi	NA
ENSG00000225791	ENST00000453216	TRAM2-AS1	ENSG00000084093	REST	45.85	94.7614	Q13127	TF,Epi	ChIP-seq,catRAPID
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000171634	BPTF	49.25	93.9059	Q12830	TF,Epi	NA
ENSG00000225791	ENST00000605910	TRAM2-AS1	ENSG00000025293	PHF20	113.98	91.5234	Q9BVI0	TF,Epi	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000067066	SP100	73.0	91.0679	P23497	TF,Epi	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000134852	CLOCK	52.73	90.0443	O15516	TF,Epi	NA
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000168769	TET2	46.5	93.633	Q6N021	TF,Epi	NA
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000102974	CTCF	38.22	90.9785	P49711	TF,Epi	ChIP-seq,catRAPID

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000125812	GZF1	78.59	93.566	Q9H116	TF	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000067066	SP100	73.0	90.5103	P23497	TF,Epi	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000181827	RFX7	70.68	92.3855	Q2KHR2	TF	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000134874	DZIP1	68.58	91.8745	Q86YF9	TF	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000169981	ZNF35	64.56	92.5166	P13682	TF	NA
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000147124	ZNF41	61.54	91.7873	P51814	TF	NA
ENSG00000225791	ENST00000453216	TRAM2-AS1	ENSG00000116539	ASH1L	55.66	91.6392	Q9NR48	TF,Epi	NA
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000005889	ZFX	54.58	90.2818	P17010	TF	ChIP-seq
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000134852	CLOCK	52.73	90.1977	O15516	TF,Epi	NA
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000126804	ZBTB1	52.61	90.9287	Q9Y2K1	TF	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000117000	RLF	49.9	95.5217	Q13129	TF	Predict
ENSG00000225791	ENST00000453216	TRAM2-AS1	ENSG00000168769	TET2	46.5	91.863	Q6N021	TF,Epi	NA
ENSG00000225791	ENST00000453216	TRAM2-AS1	ENSG00000084093	REST	45.85	94.8257	Q13127	TF,Epi	ChIP-seq,catRAPID
ENSG00000225791	ENST00000453216	TRAM2-AS1	ENSG00000070476	ZXDC	43.96	90.6092	Q2QGD7	TF	NA
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000168795	ZBTB5	38.99	94.1833	O15062	TF	Predict
ENSG00000225791	ENST00000453216	TRAM2-AS1	ENSG00000140836	ZFHX3	37.88	92.4357	Q15911	TF	NA
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000065029	ZNF76	36.66	91.8589	P36508	TF	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000186130	ZBTB6	13.95	92.6208	Q15916	TF	Predict
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000171634	BPTF	49.25	93.5997	Q12830	TF,Epi	NA
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000168769	TET2	46.5	93.719	Q6N021	TF,Epi	NA
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000117000	RLF	40.0	93.2637	Q13129	TF	Predict
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000102974	CTCF	38.22	90.9027	P49711	TF,Epi	ChIP-seq,catRAPID
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000140836	ZFHX3	37.88	91.9367	Q15911	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000213079	SCAF8	58.77	92.5593	Q9UPN6	RBP	Predict
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000198000	NOL8	55.8	90.7561	Q76FK4	RBP	Predict
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000125676	THOC2	50.18	90.668	Q8NI27	RBP	Predict
ENSG00000225791	ENST00000606558	TRAM2-AS1	ENSG00000174720	LARP7	2.34	90.8113	Q4G0J3	RBP	NA
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000056097	ZFR	103.28	95.4294	Q96KR1	RBP	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000163728	TTC14	75.86	91.8708	Q96N46	RBP	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000124193	SRSF6	62.71	90.2048	Q13247	RBP	NA
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000135870	RC3H1	46.82	93.5218	Q5TC82	RBP	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000145907	G3BP1	40.36	93.3071	Q13283	RBP	Predict
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000138757	G3BP2	32.96	93.1802	Q9UN86	RBP	NA
ENSG00000225791	ENST00000606714	TRAM2-AS1	ENSG00000174720	LARP7	28.38	92.0843	Q4G0J3	RBP	NA

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lncRNA-DNA interaction for TRAM2-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ZNF30,NCOA2,PUM1,KLF9,PBX2,RBM39,KLF12,ZBTB4,GLYR1,RBM7,MYSM1,CSDE1,NRF1,RBM23,RFX5,ZNF2,ARID2,ZXDC,RARB,DMTF1,ELF1,VEZF1,RBM27,ZNF77,ZNF24,ATF6B,TBP,GABPA,NFKB1,IKZF5,MEF2C,ZBTB5,SRP68,ZFP14,ZXDA,LARP6,RNPC3,TRPS1,ATMIN,ZNF25,LARP7,TRNT1,PNPT1,CNOT4,SON,CWC22,DDX59,ZBED5,ZZZ3,MLX,TTC14,ZBED3,RBM4,SMAD9,CREB1,RC3H1,SP100,ZNF44,ZFP91,RBMX,RBM4B,TIGD6,RBM26,ZFP1,TCFL5,PURB,GZF1,ADNP,NCBP1,MYEF2,PPIL4,TERF2,IKZF4,PUS7L,ASH1L,CLOCK,ASCC1,NFIA,CASC3,MEIS2,FUBP1,ARNT2,ZFP30,SP4,RBM43,CPSF7,KLF11,LIN54,THAP9,THOC2,DDX6,TSN,ZBTB6,ZNF34,THAP6,DDX17,E2F5,CSTF1,RFX7,E2F6,AQR,ZNF22,FMR1,LCOR,PHF1,FOXJ3,KLF3,PURA,ZNF41,ZC3H8,TTF1,RBM41,THAP1,DZIP3,SRBD1,ZFP62,PAIP1,ZNF28,ZNF45,KRR1,TMF1,ELK4,TIGD1,RBM45,NFXL1,RBM18,UNC50,SALL2,MYNN,TFCP2,ZMAT1,ZNF83,SKIL,QKI,ZFR,NSUN6,ZNF3,ZFX,NAF1,EIF2D,SYNJ1,CREM,SALL1,GPBP1,C1D,ARNT,ZNF14,KHDC1,G3BP2,RBM48,PLS1,ZFHX3,DZIP1,PUM2,XPO1,CPEB3,ELF2,SMAD4,TIGD2,NFYB,ZNF43,PTBP3,ZFP28,MTF1,SP3,ZNF17,ZNF84,BAZ2B,RXRB,ZHX2,PDCD4,AKAP1,DACH1,ZFP3,ADAT1,XPO5,ETV3,TET2,NOL8,ATF2,ZNF10

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

CNOT4,E2F5,FOXO3,ELF1,RFX7,E2F6,ATF1,ZMAT1,SMAD1,ZNF14,ADAT1,HLF,TFCP2,REST,MYNN,ZNF3,DDX46,ZHX2,ZNF83,PPIL4,ZFP30,EIF2D,PBX2,AGO4,NFIA,ARID2,ZBTB6,DDX1,RBM4,AKAP1,SRP14

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

Only predicted by TDF

THOC5,RBM42

Exist in public source

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lncRNA-RNA interaction for TRAM2-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CEBPB,RBM10,PUSL1,KLF16,RALY,IRF3,USF2,CPSF1,DDX54,THOC5,RBM42,DOT1L,MBD3,LSM7,SNRPA

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000225791	ENST00000605910	exon_skip_363747	chr22:23877720-23877869	-18.35	-0.1764	SLC2A11	ENST00000345044	Frame-shift
ENSG00000225791	ENST00000605910	exon_skip_424741	chr4:83458345-83458429	-9.63	-0.1926	MRPS18C	ENST00000295491	In-frame
ENSG00000225791	ENST00000453216	exon_skip_430434	chr4:82356536-82356683	-16.15	-0.1196	HNRNPD	ENST00000313899	In-frame
ENSG00000225791	ENST00000605910	exon_skip_27178	chr1:53233541-53233652	-14.21	-0.1528	MAGOH	ENST00000371470	In-frame
ENSG00000225791	ENST00000605910	exon_skip_64878	chr11:111883135-111883202	-8.87	-0.1365	C11orf1	ENST00000260276	Frame-shift
ENSG00000225791	ENST00000605910	exon_skip_89597	chr12:6672349-6672532	-22.69	-0.1609	ZNF384	ENST00000361959,ENST00000396801	In-frame
ENSG00000225791	ENST00000605910	exon_skip_143275	chr16:24939363-24939597	-27.45	-0.1782	ARHGAP17	ENST00000289968	In-frame
ENSG00000225791	ENST00000605910	exon_skip_343108	chr2:127051153-127051243	-13.69	-0.2360	BIN1	ENST00000316724	In-frame
ENSG00000225791	ENST00000605910	exon_skip_474258	chr7:24863199-24863292	-10.08	-0.1186	OSBPL3	ENST00000313367	In-frame
ENSG00000225791	ENST00000605910	exon_skip_500548	chr9:131494404-131494486	-11.37	-0.1864	PRRC2B	ENST00000357304	Frame-shift
ENSG00000225791	ENST00000605910	exon_skip_30682	chr1:151310210-151310255	-8.92	-0.4460	PI4KB	ENST00000368873	In-frame
ENSG00000225791	ENST00000605910	exon_skip_4279	chr1:36174897-36175008	-11.67	-0.1179	MAP7D1	ENST00000373151	In-frame
ENSG00000225791	ENST00000453216	exon_skip_421737	chr4:3428557-3428711	-8.79	-0.1113	RGS12	ENST00000336727,ENST00000344733	Frame-shift

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000225791	ENST00000605910	exon_skip_111863	chr14:23565815-23565892	-15.71	-0.2345	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000225791	ENST00000605910	exon_skip_6398	chr1:51669433-51669512	-8.91	-0.1291	OSBPL9	ENST00000428468	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52577328-52577410	217.00	-99.52	80	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52577423-52577507	211.00	-113.82	82	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52577497-52577582	190.00	-105.73	75	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52577614-52577701	175.00	-87.16	78	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52578493-52578578	168.00	-75.08	78	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52578711-52578788	159.00	-77.41	71	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52578087-52578170	150.00	-83.34	77	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52578392-52578482	149.00	-101.77	78	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52578225-52578303	146.00	-70.87	80	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52578322-52578404	143.00	-72.94	78	NA
ENSG00000225791	hsa-mir-185	ENST00000606714	chr6:52579419-52579501	143.00	-81.06	78	NA
ENSG00000225791	hsa-mir-185	ENST00000453216	chr6:52577497-52577582	190.00	-105.73	75	NA
ENSG00000225791	hsa-mir-185	ENST00000453216	chr6:52577689-52577772	150.00	-83.34	77	NA
ENSG00000225791	hsa-mir-185	ENST00000453216	chr6:52578051-52578128	150.00	-78.46	81	NA
ENSG00000225791	hsa-mir-185	ENST00000453216	chr6:52577827-52577905	146.00	-70.87	80	NA
ENSG00000225791	hsa-mir-185	ENST00000453216	chr6:52577924-52578006	143.00	-72.94	78	NA
ENSG00000225791	hsa-mir-185	ENST00000606558	chr6:52578493-52578578	168.00	-75.08	78	NA
ENSG00000225791	hsa-mir-185	ENST00000606558	chr6:52578392-52578482	149.00	-101.77	78	NA
ENSG00000225791	hsa-mir-185	ENST00000606558	chr6:52578225-52578303	146.00	-70.87	80	NA
ENSG00000225791	hsa-mir-185	ENST00000606558	chr6:52578322-52578404	143.00	-72.94	78	NA
ENSG00000225791	hsa-mir-185	ENST00000605910	chr6:52578367-52578442	177.00	-87.31	72	NA
ENSG00000225791	hsa-mir-185	ENST00000605910	chr6:52578586-52578671	168.00	-75.08	78	NA
ENSG00000225791	hsa-mir-185	ENST00000605910	chr6:52578804-52578881	159.00	-77.41	71	NA
ENSG00000225791	hsa-mir-185	ENST00000605910	chr6:52578485-52578575	149.00	-99.28	78	NA
ENSG00000225791	hsa-mir-425	ENST00000606714	chr6:52578972-52579061	161.00	-67.35	89	NA
ENSG00000225791	hsa-mir-425	ENST00000606714	chr6:52577365-52577457	158.00	-96.51	83	NA
ENSG00000225791	hsa-mir-425	ENST00000606714	chr6:52577552-52577642	156.00	-84.00	81	NA
ENSG00000225791	hsa-mir-425	ENST00000606714	chr6:52579553-52579639	155.00	-58.98	88	NA
ENSG00000225791	hsa-mir-425	ENST00000606714	chr6:52579167-52579262	148.00	-69.50	96	NA
ENSG00000225791	hsa-mir-425	ENST00000606714	chr6:52577636-52577732	147.00	-77.33	94	NA
ENSG00000225791	hsa-mir-425	ENST00000606714	chr6:52578438-52578540	144.00	-80.56	100	NA
ENSG00000225791	hsa-mir-425	ENST00000606714	chr6:52578786-52578865	141.00	-59.91	81	NA
ENSG00000225791	hsa-mir-425	ENST00000453216	chr6:52577552-52577642	156.00	-84.00	81	NA
ENSG00000225791	hsa-mir-425	ENST00000453216	chr6:52578040-52578142	144.00	-80.56	100	NA
ENSG00000225791	hsa-mir-425	ENST00000606558	chr6:52578438-52578540	144.00	-80.56	100	NA
ENSG00000225791	hsa-mir-425	ENST00000605910	chr6:52579065-52579154	161.00	-67.35	89	NA
ENSG00000225791	hsa-mir-425	ENST00000605910	chr6:52579260-52579355	148.00	-69.50	96	NA
ENSG00000225791	hsa-mir-425	ENST00000605910	chr6:52578531-52578633	144.00	-80.56	100	NA
ENSG00000225791	hsa-mir-425	ENST00000605910	chr6:52578879-52578958	141.00	-59.91	81	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52579613-52579699	191.00	-75.31	86	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52577846-52577930	184.00	-88.42	88	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52579423-52579514	174.00	-89.86	92	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52578387-52578470	172.00	-99.19	86	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52577468-52577565	171.00	-125.76	78	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52578046-52578138	171.00	-87.02	92	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52579033-52579111	166.00	-76.80	77	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52577946-52578036	163.00	-79.05	85	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52578858-52578949	157.00	-92.91	87	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52577596-52577685	152.00	-87.67	87	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52578480-52578583	152.00	-84.35	99	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52578186-52578263	150.00	-76.17	83	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52578683-52578768	149.00	-80.64	40	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52577705-52577791	146.00	-88.09	88	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52578250-52578332	144.00	-84.23	78	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52579220-52579305	143.00	-80.64	85	NA
ENSG00000225791	hsa-mir-942	ENST00000606714	chr6:52579134-52579227	142.00	-88.30	88	NA
ENSG00000225791	hsa-mir-942	ENST00000453216	chr6:52577590-52577676	188.00	-87.84	87	NA
ENSG00000225791	hsa-mir-942	ENST00000453216	chr6:52577989-52578072	172.00	-99.19	86	NA
ENSG00000225791	hsa-mir-942	ENST00000453216	chr6:52577486-52577565	171.00	-104.51	78	NA
ENSG00000225791	hsa-mir-942	ENST00000453216	chr6:52577667-52577758	153.00	-82.25	85	NA
ENSG00000225791	hsa-mir-942	ENST00000453216	chr6:52577788-52577865	150.00	-76.17	83	NA
ENSG00000225791	hsa-mir-942	ENST00000453216	chr6:52577852-52577934	144.00	-84.23	78	NA
ENSG00000225791	hsa-mir-942	ENST00000606558	chr6:52578387-52578470	172.00	-99.19	86	NA
ENSG00000225791	hsa-mir-942	ENST00000606558	chr6:52578480-52578583	152.00	-84.35	99	NA
ENSG00000225791	hsa-mir-942	ENST00000606558	chr6:52578186-52578263	150.00	-76.17	83	NA
ENSG00000225791	hsa-mir-942	ENST00000606558	chr6:52578250-52578332	144.00	-84.23	78	NA
ENSG00000225791	hsa-mir-942	ENST00000605910	chr6:52578479-52578563	169.00	-96.36	81	NA
ENSG00000225791	hsa-mir-942	ENST00000605910	chr6:52579126-52579204	166.00	-76.80	77	NA
ENSG00000225791	hsa-mir-942	ENST00000605910	chr6:52578951-52579042	157.00	-92.91	87	NA
ENSG00000225791	hsa-mir-942	ENST00000605910	chr6:52578367-52578445	153.00	-98.42	69	NA
ENSG00000225791	hsa-mir-942	ENST00000605910	chr6:52578573-52578676	152.00	-84.35	99	NA
ENSG00000225791	hsa-mir-942	ENST00000605910	chr6:52578776-52578861	149.00	-80.64	40	NA
ENSG00000225791	hsa-mir-942	ENST00000605910	chr6:52579313-52579398	143.00	-80.64	85	NA
ENSG00000225791	hsa-mir-942	ENST00000605910	chr6:52579227-52579320	142.00	-88.30	88	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52579041-52579132	173.00	-69.14	85	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52579155-52579242	172.00	-79.74	88	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52578074-52578167	171.00	-73.45	91	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52577925-52578005	168.00	-64.55	82	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52579401-52579502	162.00	-80.84	97	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52578368-52578451	161.00	-79.62	85	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52577570-52577649	156.00	-78.67	86	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52577643-52577731	155.00	-82.14	88	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52579551-52579639	152.00	-66.25	88	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52577821-52577906	149.00	-68.35	83	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52577415-52577500	145.00	-116.56	62	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52579636-52579716	143.00	-64.18	81	NA
ENSG00000225791	hsa-mir-142	ENST00000606714	chr6:52579251-52579345	140.00	-63.32	93	NA
ENSG00000225791	hsa-mir-142	ENST00000453216	chr6:52577676-52577769	171.00	-73.45	91	NA
ENSG00000225791	hsa-mir-142	ENST00000453216	chr6:52577970-52578053	161.00	-79.62	85	NA
ENSG00000225791	hsa-mir-142	ENST00000453216	chr6:52577570-52577649	156.00	-78.67	86	NA
ENSG00000225791	hsa-mir-142	ENST00000606558	chr6:52578368-52578451	161.00	-79.62	85	NA
ENSG00000225791	hsa-mir-142	ENST00000606558	chr6:52578154-52578238	147.00	-66.83	87	NA
ENSG00000225791	hsa-mir-142	ENST00000605910	chr6:52579134-52579225	173.00	-69.14	85	NA
ENSG00000225791	hsa-mir-142	ENST00000605910	chr6:52579248-52579335	172.00	-79.74	88	NA
ENSG00000225791	hsa-mir-142	ENST00000605910	chr6:52578457-52578544	171.00	-85.52	93	NA
ENSG00000225791	hsa-mir-142	ENST00000605910	chr6:52578372-52578458	141.00	-86.36	85	NA
ENSG00000225791	hsa-mir-155	ENST00000606714	chr6:52577712-52577774	154.00	-56.13	64	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52578979-52579065	198.00	-106.12	86	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52577704-52577800	190.00	-109.84	94	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52578088-52578171	188.00	-110.23	80	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52579556-52579652	179.00	-98.35	91	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52577332-52577413	174.00	-127.08	85	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52578263-52578351	171.00	-105.32	70	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52578695-52578787	166.00	-104.30	56	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52577803-52577882	164.00	-98.68	75	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52579452-52579529	164.00	-99.35	85	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52577959-52578050	162.00	-96.84	83	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52578596-52578682	154.00	-108.06	86	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52579189-52579268	153.00	-102.21	79	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52579060-52579155	151.00	-104.03	86	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52579288-52579374	145.00	-93.70	50	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52579664-52579751	145.00	-94.66	83	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52578436-52578524	143.00	-114.40	84	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52577591-52577682	142.00	-107.43	89	NA
ENSG00000225791	hsa-mir-625	ENST00000606714	chr6:52578796-52578879	142.00	-98.98	86	NA
ENSG00000225791	hsa-mir-625	ENST00000453216	chr6:52577690-52577773	188.00	-110.23	80	NA
ENSG00000225791	hsa-mir-625	ENST00000453216	chr6:52577865-52577953	171.00	-105.32	70	NA
ENSG00000225791	hsa-mir-625	ENST00000453216	chr6:52577578-52577678	150.00	-109.72	94	NA
ENSG00000225791	hsa-mir-625	ENST00000453216	chr6:52578038-52578126	143.00	-114.40	84	NA
ENSG00000225791	hsa-mir-625	ENST00000606558	chr6:52578263-52578351	171.00	-105.32	70	NA
ENSG00000225791	hsa-mir-625	ENST00000606558	chr6:52578596-52578682	154.00	-108.06	86	NA
ENSG00000225791	hsa-mir-625	ENST00000606558	chr6:52578436-52578524	143.00	-114.40	84	NA
ENSG00000225791	hsa-mir-625	ENST00000605910	chr6:52579072-52579158	198.00	-106.12	86	NA
ENSG00000225791	hsa-mir-625	ENST00000605910	chr6:52578392-52578472	172.00	-120.46	85	NA
ENSG00000225791	hsa-mir-625	ENST00000605910	chr6:52578788-52578880	166.00	-104.30	56	NA
ENSG00000225791	hsa-mir-625	ENST00000605910	chr6:52578689-52578775	154.00	-108.06	86	NA
ENSG00000225791	hsa-mir-625	ENST00000605910	chr6:52579282-52579361	153.00	-102.21	79	NA
ENSG00000225791	hsa-mir-625	ENST00000605910	chr6:52579153-52579248	151.00	-104.03	86	NA
ENSG00000225791	hsa-mir-625	ENST00000605910	chr6:52578529-52578617	143.00	-114.40	84	NA
ENSG00000225791	hsa-mir-625	ENST00000605910	chr6:52578889-52578972	142.00	-98.98	86	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52578619-52578719	189.00	-68.69	102	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52578452-52578554	187.00	-81.11	91	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52577701-52577801	180.00	-79.73	98	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52577503-52577598	178.00	-102.74	97	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52578712-52578806	176.00	-79.48	99	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52578091-52578188	175.00	-82.28	100	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52577964-52578062	172.00	-67.92	100	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52579447-52579546	169.00	-80.42	99	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52578315-52578422	167.00	-76.82	84	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52579192-52579302	166.00	-79.26	108	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52579085-52579199	165.00	-77.73	110	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52578831-52578937	161.00	-88.02	106	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52578979-52579086	159.00	-80.78	105	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52578158-52578245	155.00	-66.86	73	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52579601-52579702	155.00	-67.44	77	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52577876-52577971	150.00	-70.92	72	NA
ENSG00000225791	hsa-mir-342	ENST00000606714	chr6:52579543-52579630	142.00	-67.28	89	NA
ENSG00000225791	hsa-mir-342	ENST00000453216	chr6:52577503-52577598	178.00	-102.74	97	NA
ENSG00000225791	hsa-mir-342	ENST00000453216	chr6:52578016-52578115	176.00	-85.58	97	NA
ENSG00000225791	hsa-mir-342	ENST00000453216	chr6:52577693-52577790	175.00	-82.28	100	NA
ENSG00000225791	hsa-mir-342	ENST00000453216	chr6:52577917-52578024	167.00	-76.82	84	NA
ENSG00000225791	hsa-mir-342	ENST00000453216	chr6:52577591-52577689	157.00	-76.26	101	NA
ENSG00000225791	hsa-mir-342	ENST00000453216	chr6:52577760-52577847	155.00	-66.86	73	NA
ENSG00000225791	hsa-mir-342	ENST00000606558	chr6:52578452-52578554	187.00	-81.11	91	NA
ENSG00000225791	hsa-mir-342	ENST00000606558	chr6:52578315-52578422	167.00	-76.82	84	NA
ENSG00000225791	hsa-mir-342	ENST00000606558	chr6:52578158-52578245	155.00	-66.86	73	NA
ENSG00000225791	hsa-mir-342	ENST00000606558	chr6:52578571-52578674	151.00	-80.16	96	NA
ENSG00000225791	hsa-mir-342	ENST00000605910	chr6:52578712-52578812	189.00	-68.69	102	NA
ENSG00000225791	hsa-mir-342	ENST00000605910	chr6:52578545-52578647	187.00	-81.11	91	NA
ENSG00000225791	hsa-mir-342	ENST00000605910	chr6:52578805-52578899	176.00	-79.48	99	NA
ENSG00000225791	hsa-mir-342	ENST00000605910	chr6:52578413-52578515	175.00	-86.80	101	NA
ENSG00000225791	hsa-mir-342	ENST00000605910	chr6:52579285-52579395	166.00	-79.26	108	NA
ENSG00000225791	hsa-mir-342	ENST00000605910	chr6:52579178-52579292	165.00	-77.73	110	NA
ENSG00000225791	hsa-mir-342	ENST00000605910	chr6:52578924-52579030	161.00	-88.02	106	NA
ENSG00000225791	hsa-mir-342	ENST00000605910	chr6:52579072-52579179	159.00	-80.78	105	NA

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Variants for TRAM2-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000225791	ENSG00000120756	PLS1	KICH,KIRC,LAML,TGCT,THYM		KICH

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000080802	CNOT4	6	DLBC,KIRP,MESO,PAAD,THCA,UCEC
ENSG00000225791	ENSG00000117000	RLF	ENSG00000080802	CNOT4	6	DLBC,KIRP,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000080802	CNOT4	8	DLBC,KIRP,MESO,PAAD,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000084093	REST	ENSG00000080802	CNOT4	5	DLBC,KIRP,SKCM,THYM,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000080802	CNOT4	7	DLBC,KIRP,MESO,PAAD,SKCM,THCA,THYM
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000080802	CNOT4	7	DLBC,KIRP,MESO,PAAD,SKCM,THCA,THYM
ENSG00000225791	ENSG00000125812	GZF1	ENSG00000080802	CNOT4	5	DLBC,PAAD,TGCT,THCA,THYM
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000080802	CNOT4	6	DLBC,KIRP,MESO,TGCT,THCA,UCEC
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000080802	CNOT4	6	DLBC,KIRP,MESO,PAAD,THCA,THYM
ENSG00000225791	ENSG00000147124	ZNF41	ENSG00000080802	CNOT4	6	DLBC,KIRP,PAAD,SKCM,THCA,THYM
ENSG00000225791	ENSG00000181827	RFX7	ENSG00000080802	CNOT4	5	DLBC,SKCM,TGCT,THCA,UCEC
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000080802	CNOT4	7	DLBC,KIRP,PAAD,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000065029	ZNF76	ENSG00000133740	E2F5	5	CESC,ESCA,KICH,MESO,THCA
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000133740	E2F5	5	DLBC,KICH,MESO,THCA,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000118689	FOXO3	5	KICH,KIRC,KIRP,TGCT,THYM
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000120690	ELF1	5	DLBC,KICH,KIRC,KIRP,TGCT
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000120690	ELF1	5	ACC,DLBC,KICH,KIRP,TGCT
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000120690	ELF1	6	ACC,COAD,DLBC,KICH,KIRC,KIRP
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000181827	RFX7	6	ACC,DLBC,MESO,SKCM,THCA,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000181827	RFX7	5	DLBC,MESO,SKCM,TGCT,THCA
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000181827	RFX7	6	ACC,DLBC,MESO,SKCM,TGCT,THCA
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000181827	RFX7	6	ACC,DLBC,MESO,TGCT,THCA,UCEC
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000181827	RFX7	5	ACC,DLBC,SKCM,THCA,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000169016	E2F6	5	KICH,PAAD,THCA,THYM,UCEC
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000169016	E2F6	5	ACC,KICH,PAAD,THCA,THYM
ENSG00000225791	ENSG00000181827	RFX7	ENSG00000169016	E2F6	5	ACC,HNSC,TGCT,THCA,UCEC
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000169016	E2F6	7	COAD,LAML,LUSC,PAAD,THCA,THYM,UCEC
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000123268	ATF1	6	DLBC,KICH,KIRC,KIRP,PAAD,UCEC
ENSG00000225791	ENSG00000117000	RLF	ENSG00000123268	ATF1	5	DLBC,KICH,KIRP,THYM,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000123268	ATF1	7	ACC,DLBC,KICH,KIRP,PAAD,THYM,UCEC
ENSG00000225791	ENSG00000084093	REST	ENSG00000123268	ATF1	5	ACC,DLBC,KIRP,THYM,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000123268	ATF1	6	DLBC,KICH,KIRC,KIRP,PAAD,THYM
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000123268	ATF1	6	ACC,DLBC,KICH,KIRP,PAAD,THYM
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000123268	ATF1	7	ACC,DLBC,KICH,KIRP,PAAD,READ,THYM
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000123268	ATF1	11	ACC,COAD,DLBC,KICH,KIRC,KIRP,LUSC,PAAD,READ,THYM,UCEC
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000170365	SMAD1	5	ACC,KIRP,TGCT,THCA,THYM
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000105708	ZNF14	8	DLBC,KICH,KIRC,KIRP,MESO,PAAD,THCA,UCEC
ENSG00000225791	ENSG00000117000	RLF	ENSG00000105708	ZNF14	7	DLBC,KICH,KIRP,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000105708	ZNF14	9	BLCA,DLBC,KIRP,MESO,PAAD,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000070476	ZXDC	ENSG00000105708	ZNF14	5	DLBC,KICH,KIRP,THCA,THYM
ENSG00000225791	ENSG00000084093	REST	ENSG00000105708	ZNF14	5	DLBC,KIRP,SKCM,THYM,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000105708	ZNF14	8	DLBC,KICH,KIRC,KIRP,MESO,SKCM,THCA,THYM
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000105708	ZNF14	8	DLBC,KICH,KIRP,MESO,PAAD,SKCM,THCA,THYM
ENSG00000225791	ENSG00000125812	GZF1	ENSG00000105708	ZNF14	5	DLBC,KIRP,PAAD,THCA,THYM
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000105708	ZNF14	6	DLBC,KICH,KIRP,MESO,THCA,UCEC
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000105708	ZNF14	6	DLBC,KICH,KIRP,MESO,PAAD,THYM
ENSG00000225791	ENSG00000147124	ZNF41	ENSG00000105708	ZNF14	6	DLBC,KIRP,PAAD,SKCM,THCA,THYM
ENSG00000225791	ENSG00000169981	ZNF35	ENSG00000105708	ZNF14	5	COAD,KICH,KIRP,PAAD,THCA
ENSG00000225791	ENSG00000181827	RFX7	ENSG00000105708	ZNF14	6	DLBC,HNSC,MESO,SKCM,THCA,UCEC
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000105708	ZNF14	10	COAD,DLBC,KICH,KIRC,KIRP,PAAD,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000084093	REST	6	DLBC,KIRP,PRAD,SARC,UCEC,UCS
ENSG00000225791	ENSG00000117000	RLF	ENSG00000084093	REST	5	DLBC,KIRP,SKCM,THYM,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000084093	REST	8	ACC,DLBC,KIRP,SARC,SKCM,THYM,UCEC,UCS
ENSG00000225791	ENSG00000070476	ZXDC	ENSG00000084093	REST	6	ACC,DLBC,KIRP,THYM,UCEC,UCS
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000084093	REST	5	DLBC,KIRP,SARC,SKCM,THYM
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000084093	REST	5	ACC,DLBC,KIRP,SKCM,THYM
ENSG00000225791	ENSG00000147124	ZNF41	ENSG00000084093	REST	5	DLBC,KIRP,PRAD,SKCM,THYM
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000084093	REST	7	ACC,DLBC,KIRP,SARC,SKCM,THYM,UCEC
ENSG00000225791	ENSG00000117000	RLF	ENSG00000085274	MYNN	7	DLBC,KICH,KIRP,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000085274	MYNN	7	DLBC,KICH,KIRP,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000070476	ZXDC	ENSG00000085274	MYNN	6	DLBC,KICH,KIRP,THCA,THYM,UCEC
ENSG00000225791	ENSG00000084093	REST	ENSG00000085274	MYNN	5	DLBC,KIRP,SKCM,THYM,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000085274	MYNN	7	DLBC,KICH,KIRC,KIRP,SKCM,THCA,THYM
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000085274	MYNN	6	DLBC,KICH,KIRP,SKCM,THCA,THYM
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000085274	MYNN	5	DLBC,KICH,KIRP,THCA,UCEC
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000085274	MYNN	5	DLBC,KICH,KIRP,THCA,THYM
ENSG00000225791	ENSG00000147124	ZNF41	ENSG00000085274	MYNN	5	DLBC,KIRP,SKCM,THCA,THYM
ENSG00000225791	ENSG00000169981	ZNF35	ENSG00000085274	MYNN	6	COAD,GBM,KICH,KIRP,READ,THCA
ENSG00000225791	ENSG00000181827	RFX7	ENSG00000085274	MYNN	5	DLBC,HNSC,SKCM,THCA,UCEC
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000085274	MYNN	10	COAD,DLBC,KICH,KIRC,KIRP,READ,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000145833	DDX46	6	KICH,KIRP,PAAD,PCPG,THCA,UCEC
ENSG00000225791	ENSG00000117000	RLF	ENSG00000145833	DDX46	5	KICH,KIRP,SKCM,THCA,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000145833	DDX46	8	ACC,KICH,KIRP,PAAD,PCPG,SKCM,THCA,UCEC
ENSG00000225791	ENSG00000070476	ZXDC	ENSG00000145833	DDX46	5	ACC,KICH,KIRP,THCA,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000145833	DDX46	6	KICH,KIRP,PAAD,PCPG,SKCM,THCA
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000145833	DDX46	6	ACC,KICH,KIRP,PAAD,SKCM,THCA
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000145833	DDX46	5	KICH,KIRP,PCPG,THCA,UCEC
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000145833	DDX46	6	ACC,KICH,KIRP,PAAD,PCPG,THCA
ENSG00000225791	ENSG00000147124	ZNF41	ENSG00000145833	DDX46	5	KIRP,PAAD,PCPG,SKCM,THCA
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000145833	DDX46	8	ACC,KICH,KIRP,PAAD,PCPG,SKCM,THCA,UCEC
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000131013	PPIL4	9	DLBC,KICH,KIRC,KIRP,PAAD,PRAD,THCA,UCEC,UCS
ENSG00000225791	ENSG00000117000	RLF	ENSG00000131013	PPIL4	6	DLBC,KICH,KIRP,THCA,THYM,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000131013	PPIL4	7	DLBC,KICH,KIRP,PAAD,THCA,THYM,UCEC
ENSG00000225791	ENSG00000070476	ZXDC	ENSG00000131013	PPIL4	6	DLBC,KICH,KIRP,THCA,THYM,UCS
ENSG00000225791	ENSG00000084093	REST	ENSG00000131013	PPIL4	6	DLBC,KIRP,PRAD,THYM,UCEC,UCS
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000131013	PPIL4	7	DLBC,KICH,KIRC,KIRP,PAAD,THCA,THYM
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000131013	PPIL4	6	DLBC,KICH,KIRP,PAAD,THCA,THYM
ENSG00000225791	ENSG00000125812	GZF1	ENSG00000131013	PPIL4	5	DLBC,KIRP,PAAD,THCA,THYM
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000131013	PPIL4	6	DLBC,KICH,KIRP,PRAD,THCA,UCEC
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000131013	PPIL4	7	DLBC,KICH,KIRP,PAAD,READ,THCA,THYM
ENSG00000225791	ENSG00000147124	ZNF41	ENSG00000131013	PPIL4	6	DLBC,KIRP,PAAD,PRAD,THCA,THYM
ENSG00000225791	ENSG00000169981	ZNF35	ENSG00000131013	PPIL4	5	COAD,KICH,KIRP,PAAD,READ
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000131013	PPIL4	11	ACC,COAD,DLBC,KICH,KIRC,KIRP,PAAD,READ,THCA,THYM,UCEC
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000120784	ZFP30	6	KICH,KIRP,PCPG,PRAD,THCA,UCEC
ENSG00000225791	ENSG00000117000	RLF	ENSG00000120784	ZFP30	5	KICH,KIRP,THCA,THYM,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000120784	ZFP30	7	BLCA,KICH,KIRP,PCPG,THCA,THYM,UCEC
ENSG00000225791	ENSG00000070476	ZXDC	ENSG00000120784	ZFP30	5	KICH,KIRP,THCA,THYM,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000120784	ZFP30	5	KICH,KIRP,PCPG,THCA,THYM
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000120784	ZFP30	6	KICH,KIRP,PCPG,PRAD,THCA,UCEC
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000120784	ZFP30	5	KICH,KIRP,PCPG,THCA,THYM
ENSG00000225791	ENSG00000147124	ZNF41	ENSG00000120784	ZFP30	5	KIRP,PCPG,PRAD,THCA,THYM
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000120784	ZFP30	7	COAD,KICH,KIRP,PCPG,THCA,THYM,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000204304	PBX2	7	DLBC,KICH,KIRP,MESO,SKCM,THYM,UCEC
ENSG00000225791	ENSG00000070476	ZXDC	ENSG00000204304	PBX2	6	DLBC,KICH,KIRP,THYM,UCEC,UCS
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000204304	PBX2	7	DLBC,KICH,KIRP,MESO,SKCM,TGCT,THYM
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000204304	PBX2	5	DLBC,KIRP,MESO,TGCT,THYM
ENSG00000225791	ENSG00000065029	ZNF76	ENSG00000204304	PBX2	9	ACC,CESC,DLBC,ESCA,KICH,MESO,OV,SKCM,THYM
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000204304	PBX2	6	ACC,DLBC,KICH,KIRP,MESO,TGCT
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000134698	AGO4	7	ACC,BLCA,DLBC,KICH,THYM,UCEC,UCS
ENSG00000225791	ENSG00000070476	ZXDC	ENSG00000134698	AGO4	6	ACC,DLBC,KICH,THYM,UCEC,UCS
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000134698	AGO4	5	ACC,DLBC,KICH,TGCT,THYM
ENSG00000225791	ENSG00000168769	TET2	ENSG00000189079	ARID2	5	DLBC,PAAD,SKCM,TGCT,THCA
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000189079	ARID2	5	DLBC,PAAD,SARC,SKCM,THCA
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000189079	ARID2	6	DLBC,PAAD,SARC,SKCM,TGCT,THCA
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000189079	ARID2	5	DLBC,PAAD,SKCM,TGCT,THCA
ENSG00000225791	ENSG00000147124	ZNF41	ENSG00000189079	ARID2	5	DLBC,PAAD,SKCM,TGCT,THCA
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000189079	ARID2	5	DLBC,PAAD,SARC,SKCM,THCA
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000186130	ZBTB6	9	DLBC,KICH,KIRC,KIRP,PAAD,PCPG,SARC,THCA,UCEC
ENSG00000225791	ENSG00000117000	RLF	ENSG00000186130	ZBTB6	7	DLBC,KICH,KIRP,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000186130	ZBTB6	11	ACC,DLBC,KICH,KIRP,PAAD,PCPG,SARC,SKCM,THCA,THYM,UCEC
ENSG00000225791	ENSG00000070476	ZXDC	ENSG00000186130	ZBTB6	6	ACC,DLBC,KICH,KIRP,THCA,THYM
ENSG00000225791	ENSG00000084093	REST	ENSG00000186130	ZBTB6	7	ACC,DLBC,KIRP,SARC,SKCM,THYM,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000186130	ZBTB6	10	DLBC,KICH,KIRC,KIRP,PAAD,PCPG,SARC,SKCM,THCA,THYM
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000186130	ZBTB6	8	ACC,DLBC,KICH,KIRP,PAAD,SKCM,THCA,THYM
ENSG00000225791	ENSG00000125812	GZF1	ENSG00000186130	ZBTB6	6	DLBC,KIRP,LGG,PAAD,THCA,THYM
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000186130	ZBTB6	6	DLBC,KICH,KIRP,PCPG,THCA,UCEC
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000186130	ZBTB6	9	ACC,DLBC,KICH,KIRP,PAAD,PCPG,READ,THCA,THYM
ENSG00000225791	ENSG00000147124	ZNF41	ENSG00000186130	ZBTB6	8	DLBC,KIRP,LAML,PAAD,PCPG,SKCM,THCA,THYM
ENSG00000225791	ENSG00000169981	ZNF35	ENSG00000186130	ZBTB6	6	COAD,KICH,KIRP,PAAD,READ,THCA
ENSG00000225791	ENSG00000181827	RFX7	ENSG00000186130	ZBTB6	5	ACC,DLBC,SKCM,THCA,UCEC
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000079785	DDX1	5	KICH,KIRC,KIRP,PCPG,THCA
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000079785	DDX1	6	ACC,KICH,KIRP,PCPG,THCA,THYM
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000079785	DDX1	6	KICH,KIRC,KIRP,PCPG,THCA,THYM
ENSG00000225791	ENSG00000134852	CLOCK	ENSG00000079785	DDX1	5	KICH,KIRP,PCPG,THCA,THYM
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000079785	DDX1	7	ACC,KICH,KIRC,KIRP,PCPG,THCA,THYM
ENSG00000225791	ENSG00000102974	CTCF	ENSG00000173933	RBM4	6	KICH,KIRP,MESO,PCPG,THCA,UCEC
ENSG00000225791	ENSG00000171634	BPTF	ENSG00000173933	RBM4	6	KICH,KIRP,MESO,PCPG,THCA,UCEC
ENSG00000225791	ENSG00000116539	ASH1L	ENSG00000173933	RBM4	6	KICH,KIRP,MESO,PCPG,TGCT,THCA
ENSG00000225791	ENSG00000005889	ZFX	ENSG00000173933	RBM4	5	KICH,KIRP,MESO,TGCT,THCA
ENSG00000225791	ENSG00000126804	ZBTB1	ENSG00000173933	RBM4	7	KICH,KIRP,MESO,PCPG,TGCT,THCA,UCEC
ENSG00000225791	ENSG00000186130	ZBTB6	ENSG00000173933	RBM4	5	KICH,KIRP,PCPG,THCA,UCEC

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000225791	ENSG00000056097	ZFR	exon_skip_430434	ENSG00000138668:chr4:82356536-82356683	HNRNPD	ENST00000313899	In-frame	UVM,THYM,PCPG,PAAD,TGCT

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000225791	TRAM2-AS1,hsa-mir-942,OBSL1	KICH,TGCT,LGG,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-942,PRDM11	KICH,TGCT,LGG,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-625,YAP1	TGCT,READ,MESO,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-155,CRY2	THCA,LGG,THYM,KIRP,LIHC
ENSG00000225791	TRAM2-AS1,hsa-mir-155,ZMYND11	CESC,THCA,LGG,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-155,EPM2AIP1	CESC,THCA,LGG,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-155,CGRRF1	CESC,THCA,LGG,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-185,SIX5	KICH,TGCT,MESO,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-185,IFT81	KICH,TGCT,MESO,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-185,C19orf44	KICH,TGCT,MESO,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-185,IFT140	KICH,TGCT,MESO,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-342,UTP14C	CHOL,LGG,GBM,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-342,ERLIN2	CHOL,LGG,GBM,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-342,DDR1	CHOL,LGG,GBM,THYM,KIRP
ENSG00000225791	TRAM2-AS1,hsa-mir-342,YIPF6	CHOL,LGG,GBM,THYM,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000225791.5	ENST00000606714.4	148	16	459
ENSG00000225791.5	ENST00000453216.1	106	325	5
ENSG00000225791.5	ENST00000606558.4	87	660	397
ENSG00000225791.5	ENST00000605910.1	62	180	368

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential