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lncRNA: ENSG00000225383

Summary for SFTA1P

Gene summary

Gene information	Ensembl ID	ENSG00000225383
	Gene symbol	SFTA1P
	Gene name	surfactant associated 1, lncRNA
	HGNC	18383
	Entrez ID	207107
	Gene type	lincRNA
	Synonyms	10p14\|SFTA1P
	UniProtAcc

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Structure and expression level for SFTA1P

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000225383	5.120684e+01	2.059533e+00	2.077160e-01	9.915140e+00	3.580000e-23	6.490000e-22	UP	THCA
ENSG00000225383	7.069096e+01	4.988287e+00	2.073113e-01	2.406182e+01	6.280000e-128	2.210000e-125	UP	KIRC
ENSG00000225383	5.389021e+01	3.089697e+00	3.456811e-01	8.937998e+00	3.960000e-19	7.580000e-18	UP	HNSC
ENSG00000225383	4.716930e+02	-4.632273e+00	2.657954e-01	-1.742797e+01	5.060000e-68	2.240000e-66	DOWN	LUSC
ENSG00000225383	1.147970e+03	-1.822298e+00	2.471870e-01	-7.372142e+00	1.680000e-13	1.050000e-12	DOWN	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000225383	-3.326695e-01	1.310061e-16	LUAD	2.672524e-15
ENSG00000225383	-3.639996e-01	1.400909e-18	LUSC	1.930453e-16

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lncRNA-Protein interaction for SFTA1P

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for SFTA1P

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for SFTA1P

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for SFTA1P

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID	LncRNA Name	SNP info	Number of Positive corelated Cancer	Positive corelated Cancer	Number of Negative corelated Cancer	Negative corelated Cancer
ENSG00000225383	SFTA1P	rs4749991:10859441:C:T	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs10905835:10859858:C:T:-	2	THCA,BRCA	0
ENSG00000225383	SFTA1P	rs10905829:10841704:G:T	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs7070632:10850543:G:A	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs7083018:10848456:T:C	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs7083333:10848678:T:C	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs9424097:10848806:A:T	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs9424096:10847935:A:C:-	2	THCA,BRCA	0
ENSG00000225383	SFTA1P	rs2038665:10865505:G:A	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs7090430:10847724:C:G:+	2	THCA,BRCA	0
ENSG00000225383	SFTA1P	rs713133:10865703:A:G	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs11474946:10865546:CA:C	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs10795827:10886848:A:G	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs11256826:10818374:A:G:-	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs11256834:10834765:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs11256835:10834903:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs2296019:10836706:A:G	1	THCA	0
ENSG00000225383	SFTA1P	rs7903157:10820288:A:G	1	THCA	0
ENSG00000225383	SFTA1P	rs11592096:10836084:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs2296018:10836314:G:C	1	THCA	0
ENSG00000225383	SFTA1P	rs10905843:10886414:T:G	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs11256836:10835220:T:C	1	THCA	0
ENSG00000225383	SFTA1P	rs7923878:10879881:C:G:-	2	THCA,BRCA	0
ENSG00000225383	SFTA1P	rs59155188:10837720:A:AAAAG	1	THCA	0
ENSG00000225383	SFTA1P	rs10905841:10875619:G:A	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs10752207:10883818:T:C	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs960178:10819722:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs2018867:10854080:C:T	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs867221:10855297:G:T	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs2399572:10841830:A:G	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs7080179:10852541:G:T	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs34074543:10814810:C:CT	2	THCA,BRCA	0
ENSG00000225383	SFTA1P	rs7085561:10853292:G:T:-	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs725024:10865439:C:G:+	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs2038663:10865213:C:G:-	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs2399556:10812101:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs2399555:10811867:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs200355364:10809816:G:A	1	THCA	0
ENSG00000225383	SFTA1P	rs374597403:10809826:G:A	1	THCA	0
ENSG00000225383	SFTA1P	rs7094576:10860840:C:G	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs2038664:10865388:G:A	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs2038666:10867173:T:G	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs7098466:10861263:A:G:-	2	THCA,BRCA	0
ENSG00000225383	SFTA1P	rs7101235:10809852:G:A	1	THCA	0
ENSG00000225383	SFTA1P	rs7093336:10851191:A:C	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs10128481:10862649:T:C	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs7085963:10809848:A:G	1	THCA	0
ENSG00000225383	SFTA1P	rs2296017:10834439:C:G:-	0		2	THCA,BRCA
ENSG00000225383	SFTA1P	rs10905828:10837581:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs11320156:10870669:CT:C	0		1	THCA
ENSG00000225383	SFTA1P	rs6602455:10868418:A:G	0		1	THCA
ENSG00000225383	SFTA1P	rs10905825:10832941:A:G	1	THCA	0
ENSG00000225383	SFTA1P	rs7069558:10870241:T:C	0		1	THCA
ENSG00000225383	SFTA1P	rs6602456:10871259:A:G	0		1	THCA
ENSG00000225383	SFTA1P	rs6602457:10871297:T:G	0		1	THCA
ENSG00000225383	SFTA1P	rs998789:10818087:A:G:+	2	THCA,BRCA	0
ENSG00000225383	SFTA1P	rs10752208:10885081:C:A	0		1	THCA
ENSG00000225383	SFTA1P	rs10737044:10884967:T:A	0		1	THCA
ENSG00000225383	SFTA1P	rs7897651:10866579:A:G	0		1	THCA
ENSG00000225383	SFTA1P	rs713132:10865543:G:A	0		1	THCA
ENSG00000225383	SFTA1P	rs12219650:10828656:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs2038667:10807356:T:C	1	THCA	0
ENSG00000225383	SFTA1P	rs9423829:10807578:T:C	1	THCA	0
ENSG00000225383	SFTA1P	rs2399575:10859733:T:C	0		1	THCA
ENSG00000225383	SFTA1P	rs1885827:10859974:G:A	0		1	THCA
ENSG00000225383	SFTA1P	rs4749990:10859419:G:C	0		1	THCA
ENSG00000225383	SFTA1P	rs112547059:10817020:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs140754370:10817029:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs144716100:10817032:G:T	1	THCA	0
ENSG00000225383	SFTA1P	rs7911696:10859187:G:A	0		1	THCA
ENSG00000225383	SFTA1P	rs11256824:10813725:A:G	1	THCA	0
ENSG00000225383	SFTA1P	rs10905823:10814990:G:A	2	THCA,BRCA	0
ENSG00000225383	SFTA1P	rs10905820:10806139:A:G	1	THCA	0
ENSG00000225383	SFTA1P	rs11256823:10813455:G:A	1	THCA	0
ENSG00000225383	SFTA1P	rs9424092:10803358:G:A	1	THCA	0
ENSG00000225383	SFTA1P	rs4363499:10804089:G:A	1	THCA	0
ENSG00000225383	SFTA1P	rs4348805:10804220:T:G	1	THCA	0
ENSG00000225383	SFTA1P	rs10752204:10804547:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs977627:10804725:T:C	1	THCA	0
ENSG00000225383	SFTA1P	rs10795822:10804895:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs11256822:10810688:C:T	1	THCA	0
ENSG00000225383	SFTA1P	rs10905821:10812378:G:T	1	THCA	0
ENSG00000225383	SFTA1P	rs10905822:10812788:G:A	1	THCA	0
ENSG00000225383	SFTA1P	rs12571405:10803973:G:T	1	THCA	0
ENSG00000225383	SFTA1P	rs4749992:10859613:C:G:-	1	THCA	0
ENSG00000225383	SFTA1P	rs9424095:10817659:C:T:-	0		1	BRCA
ENSG00000225383	SFTA1P	rs9423833:10817409:A:G	1	BRCA	0
ENSG00000225383	SFTA1P	rs11599142:10815196:C:T:-	1	BRCA	0
ENSG00000225383	SFTA1P	rs2399573:10850960:A:T:-	1	BRCA	0
ENSG00000225383	SFTA1P	rs11812500:10850280:C:A	1	BRCA	0
ENSG00000225383	SFTA1P	rs1475184:10846843:G:A	1	BRCA	0
ENSG00000225383	SFTA1P	rs11256840:10847278:T:C	1	BRCA	0
ENSG00000225383	SFTA1P	rs7921103:10844011:C:T	1	BRCA	0
ENSG00000225383	SFTA1P	rs17148847:10800890:C:T:-	0		1	BRCA
ENSG00000225383	SFTA1P	rs10905831:10852526:G:T	1	BRCA	0

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000225383.5	ENST00000602763.4	80	1	243
ENSG00000225383.5	ENST00000415590.5	101	521	216
ENSG00000225383.5	ENST00000434919.5	86	551	291
ENSG00000225383.5	ENST00000446372.2	96	6	296

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential