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lncRNA: ENSG00000225265

Summary for TAF1A-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000225265
	Gene symbol	TAF1A-AS1
	Gene name	TAF1A antisense RNA 1
	HGNC	40573
	Entrez ID	100506161
	Gene type	antisense
	Synonyms	TAF1A-AS1\|01q41
	UniProtAcc

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Structure and expression level for TAF1A-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000225265	1.408407e+02	1.383275e+00	3.181420e-01	4.347978e+00	1.370000e-05	8.490000e-05	UP	GBM
ENSG00000225265	9.959311e+01	-1.345205e+00	1.738969e-01	-7.735650e+00	1.030000e-14	9.950000e-14	DOWN	KICH
ENSG00000225265	8.552567e+01	1.175927e+00	1.225354e-01	9.596633e+00	8.260000e-22	5.920000e-21	UP	LUSC
ENSG00000225265	7.021274e+01	1.030315e+00	1.231584e-01	8.365775e+00	5.970000e-17	4.840000e-16	UP	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000225265	-5.716990e-01	4.868354e-09	KICH	3.018379e-08

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lncRNA-Protein interaction for TAF1A-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for TAF1A-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for TAF1A-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

MAP1S,FMNL1,GRAMD1A,MOB3A,FLNA,IL4R,TNFRSF1A,TRPV2,SBNO2,SIPA1,MYADM,EMP3,RIN3,MVP,ADGRE5,ITGA5,FZR1,PLEKHG2,PLXND1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for TAF1A-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000225265	ENST00000441835	MAP1S	ENSG00000130479	ENST00000324096	-0.1879	292	-	GBM
ENSG00000225265	ENST00000441835	MAP1S	ENSG00000130479	ENST00000600608	-0.1105	1	-	GBM
ENSG00000225265	ENST00000441835	MAP1S	ENSG00000130479	ENST00000544059	-0.4656	318	-	GBM
ENSG00000225265	ENST00000441835	MAP1S	ENSG00000130479	ENST00000593593	-0.1007	77	-	GBM
ENSG00000225265	ENST00000441835	MAP1S	ENSG00000130479	ENST00000596637	-0.1172	97	-	GBM
ENSG00000225265	ENST00000441835	MAP1S	ENSG00000130479	ENST00000597000	-0.1496	295	-	GBM
ENSG00000225265	ENST00000441835	MYADM	ENSG00000179820	ENST00000391768	-0.1066	8	-	LUSC,LUAD
ENSG00000225265	ENST00000441835	FMNL1	ENSG00000184922	ENST00000586643	-0.4940	143	-	GBM,LUSC
ENSG00000225265	ENST00000441835	TRPV2	ENSG00000187688	ENST00000338560	-0.1275	81	-	LUSC,LUAD
ENSG00000225265	ENST00000441835	TRPV2	ENSG00000187688	ENST00000577277	-0.1077	81	-	LUSC,LUAD
ENSG00000225265	ENST00000441835	TRPV2	ENSG00000187688	ENST00000581560	-0.1291	81	-	LUSC,LUAD
ENSG00000225265	ENST00000441835	TRPV2	ENSG00000187688	ENST00000580788	-0.1077	81	-	LUSC,LUAD
ENSG00000225265	ENST00000441835	TRPV2	ENSG00000187688	ENST00000577865	-0.1077	83	-	LUSC,LUAD
ENSG00000225265	ENST00000441835	EMP3	ENSG00000142227	ENST00000270221	-0.1973	11	-	LUSC,LUAD
ENSG00000225265	ENST00000441835	EMP3	ENSG00000142227	ENST00000596315	-0.1973	11	-	LUSC,LUAD
ENSG00000225265	ENST00000441835	EMP3	ENSG00000142227	ENST00000597279	-0.1973	11	-	LUSC,LUAD
ENSG00000225265	ENST00000427540	RIN3	ENSG00000100599	ENST00000557762	-0.1250	117	-	LUSC
ENSG00000225265	ENST00000427540	MAP1S	ENSG00000130479	ENST00000324096	-0.5295	588	-	GBM
ENSG00000225265	ENST00000427540	MAP1S	ENSG00000130479	ENST00000544059	-0.1985	105	-	GBM
ENSG00000225265	ENST00000427540	MAP1S	ENSG00000130479	ENST00000593593	-0.1256	112	-	GBM
ENSG00000225265	ENST00000427540	MAP1S	ENSG00000130479	ENST00000597000	-0.5295	591	-	GBM
ENSG00000225265	ENST00000427540	FMNL1	ENSG00000184922	ENST00000586643	-2.2800	142	-	GBM,LUSC
ENSG00000225265	ENST00000427540	TRPV2	ENSG00000187688	ENST00000338560	-0.1641	39	-	LUSC,LUAD
ENSG00000225265	ENST00000427540	TRPV2	ENSG00000187688	ENST00000581560	-0.1318	39	-	LUSC,LUAD
ENSG00000225265	ENST00000427540	EMP3	ENSG00000142227	ENST00000270221	-0.1212	142	-	LUSC,LUAD
ENSG00000225265	ENST00000427540	EMP3	ENSG00000142227	ENST00000596315	-0.1212	142	-	LUSC,LUAD
ENSG00000225265	ENST00000427540	EMP3	ENSG00000142227	ENST00000597279	-0.1212	142	-	LUSC,LUAD
ENSG00000225265	ENST00000413074	RIN3	ENSG00000100599	ENST00000557762	-0.1250	381	-	LUSC
ENSG00000225265	ENST00000413074	ADGRE5	ENSG00000123146	ENST00000358600	-0.1360	41	-	LUSC,LUAD
ENSG00000225265	ENST00000413074	MAP1S	ENSG00000130479	ENST00000324096	-0.3361	36	-	GBM
ENSG00000225265	ENST00000413074	MAP1S	ENSG00000130479	ENST00000600608	-0.1310	119	-	GBM
ENSG00000225265	ENST00000413074	MAP1S	ENSG00000130479	ENST00000544059	-0.3361	62	-	GBM
ENSG00000225265	ENST00000413074	MAP1S	ENSG00000130479	ENST00000593593	-0.1256	376	-	GBM
ENSG00000225265	ENST00000413074	MAP1S	ENSG00000130479	ENST00000597000	-0.3361	39	-	GBM
ENSG00000225265	ENST00000413074	FMNL1	ENSG00000184922	ENST00000586643	-2.2800	406	-	GBM,LUSC
ENSG00000225265	ENST00000413074	TRPV2	ENSG00000187688	ENST00000338560	-0.1641	303	-	LUSC,LUAD
ENSG00000225265	ENST00000413074	TRPV2	ENSG00000187688	ENST00000581560	-0.1017	108	-	LUSC,LUAD
ENSG00000225265	ENST00000413074	EMP3	ENSG00000142227	ENST00000270221	-0.2543	60	-	LUSC,LUAD
ENSG00000225265	ENST00000413074	EMP3	ENSG00000142227	ENST00000596315	-0.2543	60	-	LUSC,LUAD
ENSG00000225265	ENST00000413074	EMP3	ENSG00000142227	ENST00000597279	-0.2543	60	-	LUSC,LUAD

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000225265.1	ENST00000441835.1	74	222	1
ENSG00000225265.1	ENST00000427540.1	68	229	23
ENSG00000225265.1	ENST00000413074.1	54	163	2

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential