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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000225138

Summary for SLC9A3-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000225138

Gene symbol

SLC9A3-AS1

Gene nameSLC9A3 antisense RNA 1
HGNC

40550

Entrez ID
Gene typeprocessed_transcript
SynonymsSLC9A3-AS1|CTD-2228K2.7|05p15.33
UniProtAcc

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Structure and expression level for SLC9A3-AS1

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002251381.401786e+032.013300e+005.312062e-013.790053e+001.506150e-046.343890e-04UPCHOL
ENSG000002251383.190890e+033.038270e+002.080134e-011.460613e+012.570000e-485.810000e-47UPKIRC
ENSG000002251382.293447e+031.749178e+002.833179e-016.173905e+006.660000e-104.740000e-09UPKIRP
ENSG000002251386.215265e+021.084506e+001.688907e-016.421348e+001.350000e-101.010000e-09UPPRAD
ENSG000002251381.197104e+032.778231e+002.137959e-011.299478e+011.310000e-382.060000e-37UPLUSC
ENSG000002251384.957475e+021.754421e+001.853191e-019.467027e+002.880000e-213.200000e-20UPLUAD
ENSG000002251381.033260e+031.613137e+002.303767e-017.002171e+002.520000e-121.760000e-11UPCOAD
ENSG000002251385.371182e+022.120697e+002.423753e-018.749642e+002.140000e-183.460000e-17UPLIHC
ENSG000002251389.968752e+023.555150e+004.039075e-018.801891e+001.350000e-182.120000e-16UPREAD

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002251384.933514e-015.741615e-04CHOL1.107500e-03
ENSG00000225138-3.278849e-011.708444e-03KICH2.250009e-03

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lncRNA-Protein interaction for SLC9A3-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000185658BRWD145.7993.6701Q9NSI6EpiPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000147130ZMYM343.9393.1141Q14202EpiPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000104885DOT1L41.7991.7401Q8TEK3TF,EpiPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000010803SCMH139.2390.3218Q96GD3TF,EpiNA
ENSG00000225138ENST00000606074CTD-2228K2.7ENSG00000173575CHD228.8193.603O14647EpiPredict
ENSG00000225138ENST00000606107CTD-2228K2.7ENSG00000185658BRWD128.5792.247Q9NSI6EpiPredict
ENSG00000225138ENST00000607286CTD-2228K2.7ENSG00000185658BRWD126.3293.4653Q9NSI6EpiPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000130382MLLT124.490.8101Q03111EpiPredict
ENSG00000225138ENST00000606074CTD-2228K2.7ENSG00000166987MBD623.7291.1325Q96DN6TF,EpiNA
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000141582CBX458.7490.5675O00257EpiNA
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000126012KDM5C39.890.2777P41229EpiPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000115274INO80B33.1890.374Q9C086EpiPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000149929HIRIP322.1391.005Q9BW71EpiPredict
ENSG00000225138ENST00000607286CTD-2228K2.7ENSG00000149929HIRIP318.9290.9067Q9BW71EpiPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000156860FBRS14.0590.6727Q9HAH7EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000236287ZBED556.2690.434Q49AG3TFNA
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000104885DOT1L41.7991.759Q8TEK3TF,EpiPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000141258SGSM240.4192.9383O43147TFPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000010803SCMH139.2390.421Q96GD3TF,EpiNA
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000130254SAFB238.4892.4284Q14151TF,RBPeCLIP,catRAPID
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000198040ZNF8434.2392.6552P51523TFNA
ENSG00000225138ENST00000607286CTD-2228K2.7ENSG00000130254SAFB229.7193.9411Q14151TF,RBPeCLIP,catRAPID
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000104885DOT1L29.6494.9989Q8TEK3TF,EpiPredict
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000011451WIZ29.2292.3701O95785TFPredict
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000256223ZNF1029.0891.9065P21506TFNA
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000099326MZF127.9591.3382P28698TFChIP-seq
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000196670ZFP6225.2190.3398Q8NB50TFNA
ENSG00000225138ENST00000606074CTD-2228K2.7ENSG00000166987MBD623.7291.5847Q96DN6TF,EpiNA
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000198040ZNF8421.4591.6644P51523TFNA
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000168795ZBTB519.0992.4532O15062TFPredict
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000141644MBD116.5190.0204Q9UIS9TF,EpiNA
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000256223ZNF1014.0390.8589P21506TFNA
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000103495MAZ12.4790.0344P56270TF,RBP,EpiChIP-seq
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000184939ZFP9010.2390.9353Q8TF47TFNA
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000167766ZNF836.4990.6548P51522TFChIP-seq

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000124193SRSF668.5591.3691Q13247RBPNA
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000122965RBM1945.6292.2467Q9Y4C8RBPNA
ENSG00000225138ENST00000534918CTD-2228K2.7ENSG00000116350SRSF441.5390.4337Q08170RBPNA
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000130254SAFB238.4890.7539Q14151TF,RBPeCLIP,catRAPID
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000004534RBM638.3893.1669P78332RBPPredict
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000013573DDX1137.7491.1998Q96FC9RBPPredict
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000122965RBM1935.292.5675Q9Y4C8RBPNA
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000106344RBM2833.2592.6485Q9NW13RBPPredict
ENSG00000225138ENST00000606074CTD-2228K2.7ENSG00000134815DHX3432.6192.3127Q14147RBPNA
ENSG00000225138ENST00000606074CTD-2228K2.7ENSG00000003756RBM529.8290.0163P52756RBPPredict
ENSG00000225138ENST00000607286CTD-2228K2.7ENSG00000130254SAFB229.7192.3677Q14151TF,RBPeCLIP,catRAPID
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000164548TRA2A26.1991.3404Q13595RBPNA
ENSG00000225138ENST00000606074CTD-2228K2.7ENSG00000129351ILF316.6491.3876Q12906RBPNA
ENSG00000225138ENST00000607286CTD-2228K2.7ENSG00000116350SRSF412.4491.0694Q08170RBPNA
ENSG00000225138ENST00000606288CTD-2228K2.7ENSG00000167978SRRM210.6296.4107Q9UQ35RBPNA
ENSG00000225138ENST00000606107CTD-2228K2.7ENSG00000167978SRRM28.6990.7523Q9UQ35RBPNA
ENSG00000225138ENST00000607286CTD-2228K2.7ENSG00000167978SRRM28.6793.3798Q9UQ35RBPNA

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lncRNA-DNA interaction for SLC9A3-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
ARHGEF1,GSDMB,B3GNTL1,VAMP1,ARL16,EPOR,TCEA2,CLPTM1L,ERI2,ZSWIM9,GPR108,MFSD8,ABHD17A,CIRBP,KIFC3,MZF1,DHX38,SLC50A1,SIRT3,MAPK8IP3,LYSMD4,TMUB1,SUGP2,N4BP2L2,BCS1L,DMTF1,SLF2,L3HYPDH,ACD,FAM193A,UNKL,DPP7,PIGG,HAGHL,GPCPD1,TRAPPC12,ULK3,CENATAC,NPEPL1,EFS,SNRPA,SAFB2,PPP1R37,KCTD13,MSANTD2,TUBGCP6,CCDC14,FAM200A,CHKA,INF2,PLPPR2,CLK4,C6orf136,MAEA,ZBED5,GNPAT,RECQL4,TTC14,TRIP10,CEP72,SLC2A11,HMGXB3,GATD1,SPRN,TAZ,SUGP1,SPG7,NAA80,MIDN,C19orf44,SRSF4,PPIP5K1,CLCN6,DNAJC2,ECHDC2,ASIC3,RCCD1,OGT,SCML1,BAIAP2L2,COX19,CLK2,BRSK1,MYEF2,POLG2,DHX34,MST1,RING1,CHKB,CEP89,METTL17,MGRN1,CPSF7,TRIM11,PRRT2,MORC2,SLC12A9,WDR83,OSGEP,CTC1,CLK1,MRRF,RABL2A,NASP,TMEM79,LLGL2,DHPS,PDZD4,MOV10,OFD1,CARS2,ACYP1,SLC25A29,CC2D1B,ELMO3,SKP2,HGS,ANO8,C4orf46,C3orf62,CYSRT1,APBA3,C19orf54,ZFP62,ALKBH2,ZBED8,YTHDC1,LPAR2,DDX51,DONSON,AGER,PIGZ,SSBP2,FGD1,SPOUT1,SRSF2,C1orf52,CUL9,CDK11A,TECPR1,TSEN54,PLD2,LRRC37B,ATG4B,SUPT20H,CCDC191,LMNTD2,PLCB3,ADHFE1,NXF1,DCUN1D2,CDKN2C,TRIP13,TSSK6,EIF2B1,UQCC1,PAN2,FAM229A,CCS,CCDC159,GIGYF1,FAM193B,THEM4,PNKP,ABCA7,TMCO6,SLC25A28,NOL3,COG7,SEC31B,ZFC3H1,KLHL17,ARHGAP33,MBTD1,N4BP2L1,ATXN2L,DNASE1,IRX3,HEXD,ARHGEF7,TNPO2,GAS8,DVL2,VCPKMT,TTC3,SCNN1D,EIF4A1,CCDC24,MRPS25,DHX16,POLM,DECR2,SHROOM1,TDRP,GALE,KIF12,ERCC5,ENTPD2,MARCHF6,IQCC,CASTOR3,PYROXD2,SLC26A11,FLVCR1,FANCL,ILF3,GLI4,CAPN12,CIZ1,LENG8,RBBP8NL,NMRAL1,SH2B1,PHKA2,STK11,PPP1R12C,C1orf159,DDX56,FAM98C,NICN1,UBE2G2,INPPL1,RTKN,PPOX,IP6K2,ARIH2,SH3D21,PPWD1,ARMCX4,MAZ,MLLT6,SLC37A4,AGK,SH3YL1,BIVM,KDM5C,TIMM44,C20orf96,ADGRA3,PHF7,COG8,ARFGAP1,MIX23,CASP2,CAPN10,BICDL2,AP1G2,FAM111A,BANP,THOC1,ANKMY1,WDR59,NUBP2,TMEM175,GNPTG,PHF12,GPN2,ACBD6,SLC12A7,ARHGAP27,TMEM8B,IFT140,NBEAL2,SLC9A3,CSNK1D,CCDC78,GDPD3,CDK20,PKD1,RIMKLB,LTO1,TRAF1,PIDD1,METAP1D,COL7A1,AP5Z1,BCLAF3,TBL3,SLC26A1,CPSF4,ALS2CL,IFT80,LAS1L,ZCCHC14,FBXO44,UBN2,EXD3,NFKBID,C17orf75,PARP2,CDH24,CABLES2,P4HTM,PCED1A,NRBP2,MAPK15,SH3GL1,ELP5,NBPF11,BRF1,ACIN1,ZC3H8,TNRC18,PPP1R3F,ENOSF1,THOC6,MAU2,PAXBP1,LEMD2,PQBP1,CCDC125,GALT,TADA2A,FNBP4,DENND6B,CCHCR1,PRMT7,LRRC56,INPP5E,RSRP1,SLC35C2,IL11RA,TLE2,NEK8,CHD2,SF3A2,MBD3,FLCN,USP40,CRACR2B,CLEC2D,ATG14,FIZ1,NBPF15,LTB4R,MRPL36,KIFC2,EXOC3L4,TSNARE1,HEMK1,UPF3B,RABEP2,IFT20,OGFR,PTOV1,PCSK4,ALKBH4,NCKAP5L,RAB11FIP3,CCDC127,DDX11,FRS3,FBXL8,PLXNB3,GK5,RBM6,TRMT13,NKD2,KRTCAP2,ZNF862,IDUA,ORAI3,MYL5,TNFRSF14,UCKL1,ABCB6,SYNGAP1,LSS,MLLT1,PSME3IP1,GPSM1,WDR27,UBXN11,EME2,PTCD1,DDX41,KHDC4,CROCC,PLXNB1,RSAD1,DHRS11,EP400P1,USF2,PPP1R26,PNISR,SFPQ,FHOD1,AMT,ACAP3,AMH,ENKD1,ZDHHC1,ZNF10,LRRC14,CLCN7,ATAT1,IFFO1,PLCG1,ZDHHC11B,TRMU,MYPOP,MEGF6,CTBP1,ANGEL2,BICRA,POMT1,ATXN7L2,ZNF598,TIGD5,CHTF18,HES1,NLGN2,FANCG,CEP250,FBXO41,MSTO1,DPY19L2,TJAP1,KATNBL1,MKS1,TAF4,C1orf35,PLEKHH1,CDK5RAP1,SPIN3,NDUFA7,FOXRED1,SLX4IP,ZCWPW1,NPRL2,RDH13,KLHDC4,SDHA,KLHDC1,CCNL2,GATAD1,WDR24,DMPK,EXOC3,CLK3,RNPC3,C14orf28,ANKRD10,TENT4A,INCA1,RGS11,VPS9D1,GFER,GABBR1,BTBD19,ZDHHC8,USP11,RFNG,SLC66A1,TCEAL1,MED25,DDTL,SGSM3,MC1R,TYK2,INTS1,COQ4,KYAT1,CCNT2,OSBPL7,STX10,KAT2A,ARMC5,ACBD4,BRWD1,PLA2G6,TMEM86B,SLC6A8,RBM25,FBXW7,RHPN1,ENDOV,MLH3,CLDN15,SETD6,POLI,PGAP2,CDK16,PRPF39,ERMARD,KIAA0753,TRIM45,NDOR1,SRRM2,MIB2,WHRN,PHF1,ABHD11,HDAC10,HEXIM2,CEP44,KLC4,SCRN2,RNF208,HSF4,PROSER3,ARGLU1,ANKS3,NOXA1,YJEFN3,CBX4,CCNL1,RGL3,PIGQ,ANKRD54,MEX3D,ANKRA2,SGSM2,RASSF7,POMT2,WIZ,VMAC,KRI1,SCMH1,MICALL2,YAE1,PMS1,FAM160A2,EGFL8,PSMG4,ZGPAT,ADCY6,DVL1,TIA1,HOOK2,ZNF83,HCN3,TMUB2,ARFRP1,ZMYM3,ABCD4,DPH1,BRAT1,CRCP,PELP1,ERCC3,DGKQ,NEIL1,SZT2,POLE,ADAMTS13,KPTN,GRIPAP1,MTG2,RNF215,THOP1,NAT9,CPNE1,CRAMP1,LUC7L,NUDCD2,WDR6,URGCP,PNN,COA5,ACY1,LUC7L2,BRD8,BTBD2,MAP2K7,SEMA4G,MROH1,CENPJ,C14orf93,DPH7,LRSAM1,TRA2A,SMARCD3,CEP131,DUS1L,NEURL4,PNPLA7,NR2C1,BRD9,CRTC2,AMY2B,APBB3,CYTH2,RBM33,TONSL,NADSYN1,MOK,IMMP1L,LRCH4,SRRT,AGAP6,RBM19,GABPB2,GEMIN8,TAF6L,ADAMTS10,GTPBP2,CFDP1,RBM39,SLC26A6,SLC25A27,MRPS26,PGS1,IRF3,ATN1,NRF1,RRNAD1,KAT8,INTS3,CCNO,PIGL,FZR1,NEK3,KCTD6,GBA2,CSAD,AGAP3,KIAA0895L,ATAD3B,SAMD10,RBM28,MUTYH,ZNF74,OBSL1,DCAF8,LAMA5,MFSD10,ABCA5,TMEM259,PHYKPL,POFUT2,CACTIN,ZBTB5,LIN37,OGA,PYCR2,NUP42,IFT27,AKT1S1,RECQL5,PAN3,PHKG2,NUMBL,ASB6,PPP1R16A,LRRC75B,MAPK12,DCAF16,ZC3H4,SUPT7L,RALGDS,QSOX2,BCAR1,CENPT,PEX1,PACS2,S100PBP,TRIM3,SHC2,CFAP410,MTG1,ZC3H3,FAM76B,POGZ,GTPBP3,RBMX,RBM4B,TSC2,ANAPC2,C21orf58,TAF1C,RBM14,MAP3K12,MBD1,LCAT,MYO19,SURF6,TRAPPC14,SAMD1,PIP4K2B,RHBDF1,ANKRD9,CAPN15,CNKSR1,SMPD4,KCNAB3,MRNIP,SS18L1,ELMOD3,DDX17,TMEM129,GSTM2,HAUS5,CHFR,MTRF1,RAD52,ARVCF,FBXL12,SDR39U1,PGGHG,TELO2,CDAN1,FBXL6,TMEM107,WSB1,TEDC1,STK19,AUP1,C12orf76,ANO9,POLL,TMEM240,FAM228B,CBLN3,WASHC1,USP21,ABCC5,TIGD1,KLC1,CNNM3,RBM10,NSD2,E2F4,GPS2,TRIM52,PCBP4,NOL12,SPIN2B,CLASRP,CCDC93,DFFB,TTC13,MBD6,CWC25,STK36,TRAF4,ANKRD16,TTC32,MICAL1,BAHCC1,MTX3,ZMAT1,GOLGA8B,SPATA20,COASY,SPATA33,DNM1,STRADA,ZNF18,LZTS2,EIF2D,GOLGA8A,PAM16,FKTN,SETD4,SPIRE2,AARSD1,DUSP28,BOLA1,RBM5,NKTR,YPEL3,CIAO3,VPS16,C19orf71,TTLL3,DOT1L,PRICKLE3,ZNF84,RXRB,PARP6,MED10,PDCD6,MTMR11,P3H1,PRPF40B,REX1BD,PLEKHN1,PIAS2,LRP5L,KATNIP,ASXL1,TSC1,QRICH2,SH3GLB2,DENND4B,FASTK,SIRT6,MAN2C1,DXO,USPL1,USP20,LZTR1,ANKRD13D,MRPL38,LIG1,NELFA,CCDC57,RABL2B,TRAPPC2,MORC4
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for SLC9A3-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
ARPC2,MORF4L1,RHOA,SSR3,CAP1,PLEKHB2
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000225138ENST00000534918exon_skip_382458chr3:38131595-38131638-11.12-0.2926ACAA1ENST00000333167Frame-shift
ENSG00000225138ENST00000534918exon_skip_41841chr10:68756272-68756483-28.21-0.2001CCAR1ENST00000265872Frame-shift
ENSG00000225138ENST00000534918exon_skip_62623chr11:69079833-69079883-14.80-0.4353TPCN2ENST00000294309Frame-shift
ENSG00000225138ENST00000534918exon_skip_114365chr14:74290026-74290118-20.92-0.2274ABCD4ENST00000356924Frame-shift
ENSG00000225138ENST00000534918exon_skip_133217chr16:8635038-8635079-12.51-0.4314METTL22ENST00000381920Frame-shift
ENSG00000225138ENST00000534918exon_skip_290158chr17:42953723-42953778-10.87-0.3294AARSD1ENST00000427569Frame-shift
ENSG00000225138ENST00000534918exon_skip_309204chr19:49181348-49181461-25.25-0.2500TRPM4ENST00000252826Frame-shift
ENSG00000225138ENST00000534918exon_skip_327433chr2:86125794-86125880-9.73-0.1836PTCD3ENST00000254630Frame-shift
ENSG00000225138ENST00000534918exon_skip_327748chr2:95410863-95411026-29.03-0.2059FAHD2AENST00000233379,ENST00000447036Frame-shift
ENSG00000225138ENST00000534918exon_skip_370518chr22:50247691-50247776-22.76-0.2678HDAC10ENST00000216271Frame-shift
ENSG00000225138ENST00000534918exon_skip_380242chr3:186784961-186785101-17.09-0.1512EIF4A2ENST00000323963Frame-shift
ENSG00000225138ENST00000534918exon_skip_446758chr5:178212972-178213103-20.75-0.1921PHYKPLENST00000308158Frame-shift
ENSG00000225138ENST00000534918exon_skip_470226chr7:103307595-103307708-19.98-0.1867PMPCBENST00000249269Frame-shift
ENSG00000225138ENST00000534918exon_skip_59071chr11:47234756-47234934-25.34-0.1527DDB2ENST00000256996Frame-shift
ENSG00000225138ENST00000534918exon_skip_92074chr12:50142052-50142110-8.80-0.3520CERS5ENST00000317551Frame-shift
ENSG00000225138ENST00000534918exon_skip_103007chr13:37025319-37025437-18.26-0.1574SUPT20HENST00000350612Frame-shift
ENSG00000225138ENST00000534918exon_skip_80419chr12:15958187-15958335-18.58-0.1281DERAENST00000428559Frame-shift

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for SLC9A3-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation
ENSG00000225138ENSG00000004777ARHGAP33ACC,BRCA,COAD,DLBC,GBM,KICH,KIRC,KIRP,LUAD,PAAD,PCPG,PRAD,READ,SARC,THCAKIRC,LUAD,READ
ENSG00000225138ENSG00000006015REX1BDACC,BRCA,KIRP,LAML,READ,THCAREAD
ENSG00000225138ENSG00000006025OSBPL7ACC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,PAAD,PCPG,READ,TGCT,THCAKIRP
ENSG00000225138ENSG00000010295IFFO1ACC,GBM,KICH,KIRC,KIRP,OV,PCPGKIRC,KIRP
ENSG00000225138ENSG00000066230SLC9A3ACC,CESC,CHOL,ESCA,HNSC,LAML,LGG,LUSC,PAAD,STAD,TGCT,THYM,UCSCHOL,LUSC
ENSG00000225138ENSG00000076344RGS11ACC,GBM,LGG,MESO,PCPG,PRAD,SARCPRAD
ENSG00000225138ENSG00000077463SIRT6ACC,BRCA,CHOL,ESCA,KICH,KIRP,LGG,LIHC,LUAD,MESO,PAAD,THCACHOL
ENSG00000225138ENSG00000082014SMARCD3ACC,KIRP,LGG,LIHC,TGCTKIRP,LIHC
ENSG00000225138ENSG00000103168TAF1CACC,BRCA,COAD,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,READ,SARC,THCA,UCS,UVMREAD
ENSG00000225138ENSG00000103253HAGHLACC,GBM,LGG,MESO,PAAD,PRAD,READPRAD,READ
ENSG00000225138ENSG00000103326CAPN15ACC,BRCA,CHOL,COAD,ESCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PRAD,READ,TGCT,THCAKIRC
ENSG00000225138ENSG00000104859CLASRPACC,BRCA,COAD,GBM,KICH,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,READ,SARC,THCA,UVMKIRC
ENSG00000225138ENSG00000104899AMHACC,BLCA,COAD,GBM,LGG,PCPG,READ,SARC,TGCTCOAD,READ
ENSG00000225138ENSG00000105486LIG1ACC,GBM,KICH,KIRP,PCPG,PRAD,SARC,THCAKIRP
ENSG00000225138ENSG00000106404CLDN15ACC,BRCA,CHOL,DLBC,GBM,LAML,LGG,READ,THCA,UCECREAD
ENSG00000225138ENSG00000112877CEP72ACC,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,LIHC,LUAD,LUSC,OV,PAAD,PRAD,SARC,SKCM,STAD,THYM,UCEC,UCSCHOL,COAD,LIHC,LUAD,LUSC
ENSG00000225138ENSG00000113240CLK4ACC,DLBC,GBM,KIRC,KIRP,LGG,TGCT,THCA,UVMKIRC
ENSG00000225138ENSG00000115257PCSK4ACC,BRCA,GBM,KIRP,LAML,LGG,LUAD,MESO,PAAD,PCPG,READ,THCAKIRP,READ
ENSG00000225138ENSG00000117616RSRP1ACC,BRCA,GBM,HNSC,KICH,KIRC,KIRP,LUAD,PAAD,PRAD,READ,THCA,UVMKIRC
ENSG00000225138ENSG00000127586CHTF18ACC,BRCA,COAD,DLBC,GBM,KICH,KIRP,LAML,LGG,LUAD,MESO,PCPG,PRAD,READ,SARC,THCA,UCSCOAD,KIRP,LUAD,PRAD,READ
ENSG00000225138ENSG00000129646QRICH2ACC,GBM,LGG,PRAD,SARC,THCA,UCSPRAD
ENSG00000225138ENSG00000130299GTPBP3ACC,BRCA,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,PAAD,PRAD,READ,THCAREAD
ENSG00000225138ENSG00000132522GPS2ACC,BRCA,COAD,DLBC,GBM,KIRC,KIRP,LAML,LGG,LUAD,MESO,PCPG,PRAD,READ,SARC,THCA,UCEC,UVMKIRC,KIRP
ENSG00000225138ENSG00000134461ANKRD16ACC,COAD,LGG,READ,THCAREAD
ENSG00000225138ENSG00000135722FBXL8ACC,BRCA,COAD,KICH,KIRC,KIRP,LAML,LUAD,LUSC,PAAD,READ,SKCM,THCA,UVMKIRC,KIRP,READ
ENSG00000225138ENSG00000138834MAPK8IP3ACC,BRCA,COAD,DLBC,GBM,KIRC,KIRP,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,TGCT,THCA,UCS,UVMKIRC,KIRP,LUAD,READ
ENSG00000225138ENSG00000146067FAM193BACC,BRCA,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,PAAD,READ,SARC,SKCM,THCA,UVMKIRC,KIRP
ENSG00000225138ENSG00000146830GIGYF1ACC,BRCA,COAD,GBM,KICH,KIRC,KIRP,LAML,LGG,READ,SARC,SKCM,THCA,UCEC,UVMREAD
ENSG00000225138ENSG00000148341SH3GLB2ACC,BRCA,CHOL,COAD,GBM,KIRP,READ,TGCT,THCACHOL
ENSG00000225138ENSG00000148384INPP5EACC,BRCA,CHOL,COAD,GBM,KIRC,KIRP,LAML,LGG,READ,THCA,UCS,UVMREAD
ENSG00000225138ENSG00000148399DPH7ACC,BLCA,BRCA,COAD,GBM,KICH,KIRC,KIRP,LAML,LGG,READ,THCA,UCS,UVMREAD
ENSG00000225138ENSG00000160949TONSLACC,CHOL,GBM,READ,THCACHOL,READ
ENSG00000225138ENSG00000160959LRRC14ACC,GBM,KICH,KIRP,LGG,PAAD,READ,THCA,THYMREAD
ENSG00000225138ENSG00000161010MRNIPACC,BRCA,COAD,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,PAAD,READ,SKCM,THCA,THYM,UVMKIRC
ENSG00000225138ENSG00000162572SCNN1DACC,BRCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,MESO,PAAD,PCPG,PRAD,TGCTKIRC,KIRP,LUAD,PRAD
ENSG00000225138ENSG00000163013FBXO41ACC,DLBC,LUAD,PCPG,PRAD,UCSLUAD
ENSG00000225138ENSG00000167615LENG8ACC,BRCA,COAD,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,READ,SARC,SKCM,THCA,UCEC,UVMKIRC,READ
ENSG00000225138ENSG00000167702KIFC2ACC,BRCA,CHOL,COAD,DLBC,GBM,HNSC,KIRC,KIRP,PAAD,READ,SARC,THCA,THYM,UVMCHOL,COAD,KIRC,KIRP,READ
ENSG00000225138ENSG00000167962ZNF598ACC,DLBC,GBM,KICH,LGG,MESO,PAAD,PRAD,READREAD
ENSG00000225138ENSG00000169992NLGN2ACC,GBM,KICH,KIRP,LGG,LUAD,SARC,TGCT,THCAKIRP
ENSG00000225138ENSG00000171097KYAT1ACC,COAD,DLBC,GBM,LAML,LGG,READ,THYM,UCSCOAD,READ
ENSG00000225138ENSG00000174943KCTD13ACC,BRCA,COAD,DLBC,KICH,KIRC,KIRP,LAML,LUAD,MESO,PAAD,PRAD,READ,SARC,THCA,UCSKIRC,KIRP,READ
ENSG00000225138ENSG00000175309PHYKPLACC,GBM,KICH,KIRC,KIRP,LGG,PAAD,READ,TGCT,THCA,UVMKIRC
ENSG00000225138ENSG00000175455CCDC14ACC,GBM,KICH,KIRC,KIRP,LGG,PAAD,PRAD,SKCM,THCA,UCS,UVMKIRC,KIRP
ENSG00000225138ENSG00000176978DPP7ACC,BRCA,CHOL,COAD,READCOAD,READ
ENSG00000225138ENSG00000183397C19orf71ACC,BRCA,GBM,LAML,LGG,LUSC,PAAD,PRAD,READ,THCA,THYMREAD
ENSG00000225138ENSG00000183751TBL3ACC,CHOL,GBM,LGG,PAAD,READREAD
ENSG00000225138ENSG00000184465WDR27ACC,DLBC,GBM,KIRC,KIRP,LAML,LGG,PAAD,SARC,THCA,UCSKIRC,KIRP
ENSG00000225138ENSG00000185189NRBP2ACC,GBM,KIRP,LGG,PAAD,READ,THCA,THYMKIRP
ENSG00000225138ENSG00000185522LMNTD2ACC,BRCA,COAD,DLBC,KIRC,KIRP,PAAD,READ,THCA,THYMKIRC,KIRP,READ
ENSG00000225138ENSG00000185917SETD4ACC,CHOL,GBM,KIRP,LAML,LGG,MESO,PAAD,PCPG,PRAD,SARC,THCA,UCSCHOL
ENSG00000225138ENSG00000188747NOXA1ACC,BLCA,BRCA,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LAML,LGG,LIHC,PAAD,READ,SARC,STAD,TGCT,THCA,THYM,UVMREAD
ENSG00000225138ENSG00000196123KIAA0895LACC,BRCA,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,READ,SARC,THCA,UCS,UVMKIRC,KIRP,READ
ENSG00000225138ENSG00000197119SLC25A29ACC,BRCA,COAD,DLBC,GBM,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SARC,THCA,UVMCOAD,READ
ENSG00000225138ENSG00000197774EME2ACC,BRCA,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,UVMCHOL,COAD,KIRC,KIRP,LIHC,LUAD,PRAD,READ
ENSG00000225138ENSG00000204305AGERACC,BRCA,GBM,KIRC,KIRP,LGG,PAAD,UVMKIRC,KIRP
ENSG00000225138ENSG00000204681GABBR1ACC,DLBC,KIRC,KIRP,SARC,SKCM,THCA,UCS,UVMKIRC,KIRP
ENSG00000225138ENSG00000213903LTB4RACC,BLCA,COAD,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PRAD,READ,SARC,TGCT,THCA,THYM,UCEC,UCS,UVMCOAD,KIRC,KIRP,LUSC,READ
ENSG00000225138ENSG00000213918DNASE1ACC,CHOL,DLBC,GBM,LAML,LGG,LUAD,PCPG,PRAD,SARC,TGCT,THCA,UCSCHOL,LUAD
ENSG00000225138ENSG00000214021TTLL3ACC,BRCA,GBM,KIRC,KIRP,LGG,LUAD,PAAD,PCPG,PRAD,SARC,SKCM,TGCT,THCA,UCECKIRC,KIRP
ENSG00000225138ENSG00000215375MYL5ACC,BRCA,COAD,ESCA,GBM,KICH,KIRC,KIRP,LGG,LIHC,LUAD,MESO,PCPG,READ,SKCM,TGCT,THCA,UCECKIRC,KIRP
ENSG00000225138ENSG00000217930PAM16ACC,BRCA,COAD,DLBC,KICH,KIRC,KIRP,LGG,LUAD,MESO,PAAD,PRAD,READ,SARC,THCAKIRC
ENSG00000225138ENSG00000221978CCNL2ACC,BRCA,CESC,COAD,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PRAD,READ,THCA,UVMKIRC,KIRP,LUAD,READ
ENSG00000225138ENSG00000249115HAUS5ACC,BRCA,COAD,DLBC,GBM,LUAD,PCPG,PRAD,SARC,THCA,UCSCOAD
ENSG00000225138ENSG00000258839MC1RACC,CHOL,KIRP,LAML,LGG,LUAD,PAAD,PCPG,THCA,THYM,UVMCHOL,KIRP,LUAD
ENSG00000225138ENSG00000267796LIN37ACC,KIRC,KIRP,PRAD,SARC,THCAKIRC
ENSG00000225138ENSG00000132635PCED1ABLCA,BRCA,COAD,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,SARC,TGCT,THCACOAD
ENSG00000225138ENSG00000139880CDH24BLCA,KICH,LAML,LGG,PCPG,PRAD,READ,SARC,TGCT,THYMREAD
ENSG00000225138ENSG00000177595PIDD1BLCA,BRCA,CHOL,COAD,GBM,KICH,KIRP,LAML,LGG,PAAD,READ,SARC,TGCT,THCAKIRP,READ
ENSG00000225138ENSG00000278259MYO19BLCA,GBM,KIRP,LGG,LUAD,PCPG,PRADLUAD
ENSG00000225138ENSG00000007384RHBDF1BRCA,COAD,GBM,KIRP,LIHC,LUAD,PAAD,READ,TGCTKIRP,READ
ENSG00000225138ENSG00000095066HOOK2BRCA,CHOL,COAD,GBM,KIRC,KIRP,LAML,LGG,LIHC,LUAD,LUSC,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UVMCHOL
ENSG00000225138ENSG00000100288CHKBBRCA,GBM,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,READKIRC,READ
ENSG00000225138ENSG00000100429HDAC10BRCA,COAD,GBM,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,THCAKIRC,KIRP,READ
ENSG00000225138ENSG00000102125TAZBRCA,COAD,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,MESO,PAAD,PCPG,PRAD,READ,TGCT,THCA,UVMKIRC,KIRP,READ
ENSG00000225138ENSG00000106009BRAT1BRCA,CHOL,COAD,GBM,KICH,KIRP,LGG,PAAD,READ,STAD,THCAREAD
ENSG00000225138ENSG00000108773KAT2ABRCA,DLBC,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,MESO,PAAD,PCPG,PRAD,SARC,SKCM,THCA,UVMKIRC,KIRP,LUAD
ENSG00000225138ENSG00000109736MFSD10BRCA,GBM,KIRP,MESO,PRAD,READ,TGCT,THCAKIRP,READ
ENSG00000225138ENSG00000113108APBB3BRCA,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,PAAD,READ,SARC,SKCM,TGCT,THCA,THYM,UVMKIRC
ENSG00000225138ENSG00000122678POLMBRCA,COAD,GBM,KIRP,LAML,LGG,LIHC,PAAD,READ,SKCM,THCA,UCSREAD
ENSG00000225138ENSG00000124074ENKD1BRCA,CHOL,GBM,KICH,KIRP,LAML,PAAD,THCAKIRP
ENSG00000225138ENSG00000127415IDUABRCA,COAD,GBM,KICH,KIRC,KIRP,LAML,LGG,PAAD,READ,TGCT,THCAKIRC,KIRP,READ
ENSG00000225138ENSG00000130701RBBP8NLBRCA,CHOL,LUSC,READ,THCA,THYMCHOL,LUSC,READ
ENSG00000225138ENSG00000132680KHDC4BRCA,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,PAAD,PCPG,PRAD,SARC,SKCM,THCA,UVMLUAD
ENSG00000225138ENSG00000132879FBXO44BRCA,COAD,KIRP,LUAD,PCPG,PRAD,READ,SARC,THCA,THYMREAD
ENSG00000225138ENSG00000133612AGAP3BRCA,GBM,KICH,KIRC,KIRP,READ,TGCT,THCAREAD
ENSG00000225138ENSG00000139631CSADBRCA,COAD,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,READ,SARC,SKCM,TGCT,THCA,UCS,UVMKIRC
ENSG00000225138ENSG00000142330CAPN10BRCA,COAD,DLBC,GBM,KIRC,KIRP,LAML,LGG,LUAD,MESO,PAAD,PCPG,READ,THCA,UVMREAD
ENSG00000225138ENSG00000143793C1orf35BRCA,COAD,DLBC,GBM,KICH,KIRP,LAML,LGG,LIHC,MESO,PAAD,PRAD,READ,THCALIHC,READ
ENSG00000225138ENSG00000146828SLC12A9BRCA,COAD,GBM,KICH,KIRP,READ,THCAREAD
ENSG00000225138ENSG00000158062UBXN11BRCA,COAD,KICH,KIRC,KIRP,LUAD,PAAD,PRAD,READ,THCACOAD,KIRC,KIRP,READ
ENSG00000225138ENSG00000158106RHPN1BRCA,GBM,KIRP,LAML,PAAD,READ,TGCT,THCA,UVMKIRP,READ
ENSG00000225138ENSG00000160072ATAD3BBRCA,GBM,KICH,KIRC,KIRP,LGG,LUAD,PAAD,PRAD,THCA,UVMKIRC,LUAD
ENSG00000225138ENSG00000160298C21orf58BRCA,CHOL,COAD,DLBC,GBM,LGG,LUAD,MESO,PRAD,READ,STAD,TGCTCHOL
ENSG00000225138ENSG00000160972PPP1R16ABRCA,CHOL,DLBC,GBM,LAML,PAAD,READ,TGCT,THCAREAD
ENSG00000225138ENSG00000162069BICDL2BRCA,COAD,LUAD,PAAD,PRAD,READ,TGCT,THCA,UCSLUAD
ENSG00000225138ENSG00000163463KRTCAP2BRCA,COAD,KICH,KIRP,LUAD,PAADLUAD
ENSG00000225138ENSG00000164050PLXNB1BRCA,COAD,GBM,KIRP,LAML,LUSC,PAAD,READ,TGCT,THCA,THYMREAD
ENSG00000225138ENSG00000164877MICALL2BRCA,COAD,GBM,KICH,KIRC,KIRP,LIHC,PAAD,READ,TGCT,THCA,UCSKIRC,KIRP
ENSG00000225138ENSG00000168096ANKS3BRCA,COAD,GBM,KICH,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,TGCT,THCA,UVMKIRP,READ
ENSG00000225138ENSG00000177225GATD1BRCA,CHOL,COAD,GBM,PAAD,READ,TGCTREAD
ENSG00000225138ENSG00000178093TSSK6BRCA,DLBC,GBM,KIRP,LAML,LGG,LIHC,MESO,PRADLIHC
ENSG00000225138ENSG00000181085MAPK15BRCA,HNSC,KIRC,KIRP,THCAKIRC,KIRP
ENSG00000225138ENSG00000182173TSEN54BRCA,GBM,KICH,KIRP,LAML,LGG,LIHC,LUAD,PAAD,PCPG,PRAD,THCALIHC
ENSG00000225138ENSG00000182325FBXL6BRCA,CHOL,GBM,KICH,KIRC,KIRP,LGG,READ,THCAKIRC,READ
ENSG00000225138ENSG00000185101ANO9BRCA,COAD,KIRC,KIRP,PAAD,READ,TGCTCOAD,KIRC,KIRP,READ
ENSG00000225138ENSG00000185347TEDC1BRCA,GBM,KIRP,LUAD,PRAD,THCAKIRP
ENSG00000225138ENSG00000186166CENATACBRCA,GBM,KICH,KIRC,KIRP,LGG,LUAD,MESO,PAAD,PCPG,PRAD,THCA,UVMKIRC,KIRP
ENSG00000225138ENSG00000187961KLHL17BRCA,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,READ,THCAKIRC,LUAD,LUSC,PRAD,READ
ENSG00000225138ENSG00000204149AGAP6BRCA,COAD,GBM,KIRC,KIRP,LAML,LGG,PAAD,READ,SARC,THCA,UCS,UVMKIRC,KIRP,READ
ENSG00000225138ENSG00000215252GOLGA8BBRCA,GBM,KIRC,KIRP,LAML,LGG,LUAD,PAAD,PCPG,PRAD,SARC,SKCM,THCA,UCS,UVMKIRC,KIRP
ENSG00000225138ENSG00000215440NPEPL1BRCA,CHOL,COAD,GBM,KIRP,LGG,LIHC,LUAD,MESO,PAAD,PRAD,READ,TGCT,THCACHOL,COAD,LIHC,READ
ENSG00000225138ENSG00000240230COX19BRCA,KIRP,LAML,LIHC,PAAD,READ,THCA,UVMREAD
ENSG00000225138ENSG00000242802AP5Z1BRCA,COAD,GBM,KICH,KIRC,KIRP,LAML,LIHC,READ,STAD,THCALIHC,READ
ENSG00000225138ENSG00000273899NOL12BRCA,COAD,GBM,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,READ,THCAKIRC,LUSC
ENSG00000225138ENSG00000071539TRIP13CESC,CHOL,DLBC,OV,PRAD,STADCHOL,PRAD
ENSG00000225138ENSG00000145506NKD2CESC,LGG,READ,SARC,STADREAD
ENSG00000225138ENSG00000014164ZC3H3CHOL,KICH,LGG,PAAD,READREAD
ENSG00000225138ENSG00000044446PHKA2CHOL,GBM,KIRC,KIRP,PAAD,SARC,TGCT,THCA,UCS,UVMKIRC
ENSG00000225138ENSG00000073350LLGL2CHOL,KIRP,PAAD,PRAD,TGCTCHOL
ENSG00000225138ENSG00000073605GSDMBCHOL,DLBC,GBM,KIRC,LAML,LGG,PAAD,TGCT,THCA,UCSKIRC
ENSG00000225138ENSG00000102225CDK16CHOL,DLBC,MESO,PRAD,READ,TGCT,THYMCHOL
ENSG00000225138ENSG00000102977ACDCHOL,GBM,KICH,KIRP,LAML,LGG,PAAD,PRAD,READ,THCA,UCSCHOL,READ
ENSG00000225138ENSG00000106077ABHD11CHOL,KIRP,READ,TGCT,THCACHOL,KIRP
ENSG00000225138ENSG00000114270COL7A1CHOL,LGG,LUSC,PRAD,THYMCHOL,LUSC
ENSG00000225138ENSG00000114993RTKNCHOL,COAD,KIRC,LAML,LGG,PAAD,PRAD,TGCTCOAD
ENSG00000225138ENSG00000123080CDKN2CCHOL,DLBC,KICH,PRAD,TGCTCHOL
ENSG00000225138ENSG00000127580WDR24CHOL,GBM,LAML,LGG,LUAD,READ,THCAREAD
ENSG00000225138ENSG00000128298BAIAP2L2CHOL,LGG,MESO,PAAD,READ,TGCTCHOL
ENSG00000225138ENSG00000130821SLC6A8CHOL,GBM,MESO,PRAD,THYMCHOL
ENSG00000225138ENSG00000134905CARS2CHOL,KICH,MESO,READ,THCAREAD
ENSG00000225138ENSG00000136883KIF12CHOL,COAD,KIRC,KIRP,TGCT,THCACHOL,COAD
ENSG00000225138ENSG00000140859KIFC3CHOL,KICH,LIHC,LUAD,MESO,THCA,UVMCHOL
ENSG00000225138ENSG00000141013GAS8CHOL,GBM,KIRP,LAML,PAAD,PCPG,READ,TGCT,THCA,THYM,UCSCHOL
ENSG00000225138ENSG00000142675CNKSR1CHOL,LUAD,PAAD,READ,THCACHOL,READ
ENSG00000225138ENSG00000149782PLCB3CHOL,ESCA,GBM,KICH,LGG,READCHOL
ENSG00000225138ENSG00000159147DONSONCHOL,KICH,KIRP,PCPG,PRAD,THCA,UVMKIRP
ENSG00000225138ENSG00000159314ARHGAP27CHOL,KIRC,KIRP,PAAD,TGCTCHOL,KIRP
ENSG00000225138ENSG00000160439RDH13CHOL,KIRP,MESO,PAAD,PCPG,THCA,THYMCHOL
ENSG00000225138ENSG00000167523SPATA33CHOL,COAD,KIRP,PAAD,READ,TGCT,THCA,UCSCHOL,COAD,READ
ENSG00000225138ENSG00000172432GTPBP2CHOL,COAD,PAAD,THCA,UVMCHOL
ENSG00000225138ENSG00000180822PSMG4CHOL,GBM,LAML,LGG,PAAD,READREAD
ENSG00000225138ENSG00000214193SH3D21CHOL,KICH,LUAD,PAAD,THCA,UVMCHOL,LUAD
ENSG00000225138ENSG00000225697SLC26A6CHOL,COAD,GBM,KICH,KIRP,LGG,LUAD,LUSC,PCPG,PRAD,READ,THCA,UCECLUAD,LUSC,PRAD
ENSG00000225138ENSG00000278535DHRS11CHOL,LAML,LUAD,MESO,PCPG,TGCT,THYMLUAD
ENSG00000225138ENSG00000135596MICAL1COAD,GBM,KICH,KIRC,LGGKIRC
ENSG00000225138ENSG00000137343ATAT1COAD,DLBC,KICH,KIRC,KIRP,LAML,LGG,PAAD,SARC,TGCT,THCA,UCSCOAD
ENSG00000225138ENSG00000142102PGGHGCOAD,GBM,KIRC,KIRP,LGG,PAAD,READ,TGCT,THCACOAD,KIRC,KIRP,READ
ENSG00000225138ENSG00000143630HCN3COAD,GBM,KIRP,LAML,LGG,LUAD,PCPG,READ,SARC,TGCTLUAD,READ
ENSG00000225138ENSG00000145217SLC26A1COAD,LAML,LGG,LIHC,LUAD,PRAD,READLUAD,PRAD,READ
ENSG00000225138ENSG00000157873TNFRSF14COAD,KIRC,KIRP,LUAD,PAAD,READ,THCAKIRC,KIRP
ENSG00000225138ENSG00000160271RALGDSCOAD,GBM,KIRC,READ,THYM,UCS,UVMKIRC
ENSG00000225138ENSG00000160602NEK8COAD,GBM,KIRP,LUAD,PAAD,READ,THCAREAD
ENSG00000225138ENSG00000160796NBEAL2COAD,GBM,PAAD,PRAD,READCOAD,READ
ENSG00000225138ENSG00000164403SHROOM1COAD,GBM,KICH,KIRC,PAAD,READ,TGCT,THCA,THYM,UVMKIRC
ENSG00000225138ENSG00000172890NADSYN1COAD,GBM,KIRC,KIRP,LAML,LGG,PAAD,TGCT,THCAKIRC
ENSG00000225138ENSG00000205436EXOC3L4COAD,KIRC,KIRP,PAAD,READKIRC,KIRP
ENSG00000225138ENSG00000069493CLEC2DDLBC,GBM,KIRP,LGG,OVKIRP
ENSG00000225138ENSG00000130653PNPLA7DLBC,GBM,KIRC,KIRP,LAML,LGG,THCA,UVMKIRC
ENSG00000225138ENSG00000141582CBX4DLBC,LGG,PAAD,READ,SARCREAD
ENSG00000225138ENSG00000149679CABLES2DLBC,GBM,LUAD,PRAD,TGCT,UCSLUAD
ENSG00000225138ENSG00000161960EIF4A1DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,SKCM,UVMKIRC,KIRP
ENSG00000225138ENSG00000162591MEGF6DLBC,KICH,LAML,READ,TGCTREAD
ENSG00000225138ENSG00000222009BTBD19DLBC,GBM,KIRC,TGCT,THCAKIRC
ENSG00000225138ENSG00000256525POLG2DLBC,GBM,KICH,KIRC,KIRP,LGG,PCPG,PRAD,SARC,SKCM,THCA,UVMKIRC,KIRP
ENSG00000225138ENSG00000266338NBPF15DLBC,GBM,KIRC,KIRP,LGG,SKCM,UCS,UVMKIRC
ENSG00000225138ENSG00000013441CLK1GBM,KIRC,KIRP,LGG,PRAD,THCA,UCS,UVMKIRC
ENSG00000225138ENSG00000072609CHFRGBM,KIRP,LGG,PCPG,THCAKIRP
ENSG00000225138ENSG00000076928ARHGEF1GBM,KICH,KIRC,KIRP,PCPG,PRAD,READ,THCAKIRC
ENSG00000225138ENSG00000099904ZDHHC8GBM,KICH,KIRP,LAML,LGG,PRAD,READ,TGCT,THCAREAD
ENSG00000225138ENSG00000100842EFSGBM,KICH,LGG,LUSC,TGCT,THCA,THYMLUSC
ENSG00000225138ENSG00000103249CLCN7GBM,LGG,LUAD,MESO,READREAD
ENSG00000225138ENSG00000109046WSB1GBM,KIRC,KIRP,LGG,PAAD,THCA,UVMKIRC
ENSG00000225138ENSG00000110844PRPF40BGBM,KIRP,LGG,LUSC,PCPGLUSC
ENSG00000225138ENSG00000115657ABCB6GBM,LGG,PCPG,PRAD,READ,SARC,TGCT,THYMREAD
ENSG00000225138ENSG00000129219PLD2GBM,KICH,KIRP,READ,TGCT,THYMKIRP
ENSG00000225138ENSG00000129347KRI1GBM,KICH,KIRP,LGG,LUSC,PAAD,PRAD,THCALUSC
ENSG00000225138ENSG00000130590SAMD10GBM,KIRP,LAML,LGG,LUAD,MESO,PAAD,PCPG,READ,TGCT,THCALUAD,READ
ENSG00000225138ENSG00000134253TRIM45GBM,KICH,KIRP,LUAD,PRAD,TGCT,THCA,UVMLUAD
ENSG00000225138ENSG00000139625MAP3K12GBM,KIRC,KIRP,LGG,PCPG,THCAKIRC,KIRP
ENSG00000225138ENSG00000160323ADAMTS13GBM,KIRP,LGG,PAAD,SARC,TGCT,THYM,UCEC,UVMKIRP
ENSG00000225138ENSG00000162650ATXN7L2GBM,KIRP,LAML,LGG,LUAD,PCPG,READ,SARC,THCAKIRP,READ
ENSG00000225138ENSG00000163472TMEM79GBM,KICH,LGG,LIHC,THYM,UCSLIHC
ENSG00000225138ENSG00000167371PRRT2GBM,KIRC,PAAD,PCPG,PRAD,SARC,TGCTKIRC
ENSG00000225138ENSG00000172009THOP1GBM,KICH,LGG,PCPG,READREAD
ENSG00000225138ENSG00000174233ADCY6GBM,LGG,LIHC,PAAD,PRAD,TGCT,UVMLIHC
ENSG00000225138ENSG00000175265GOLGA8AGBM,HNSC,KICH,KIRP,LGG,LUAD,PAAD,PRAD,SARC,SKCM,THCA,UCS,UVMKIRP
ENSG00000225138ENSG00000178026LRRC75BGBM,KIRC,KIRP,LGG,LUAD,LUSC,PCPG,READ,TGCTKIRC,KIRP,READ
ENSG00000225138ENSG00000184381PLA2G6GBM,KIRC,KIRP,LGG,MESO,PAAD,PRAD,READ,THCA,UVMKIRC
ENSG00000225138ENSG00000185158LRRC37BGBM,KIRC,KIRP,LAML,LGG,PCPG,SARC,THCAKIRC,KIRP
ENSG00000225138ENSG00000212864RNF208GBM,KIRP,READ,STAD,TGCTREAD
ENSG00000225138ENSG00000213398LCATGBM,KICH,KIRC,KIRP,LGG,LUAD,MESO,OV,PAAD,THCA,UVMKIRC,KIRP
ENSG00000225138ENSG00000240038AMY2BGBM,KIRC,KIRP,LAML,LGG,THCAKIRC,KIRP
ENSG00000225138ENSG00000250067YJEFN3GBM,KIRC,KIRP,LAML,LGG,MESO,PAAD,PCPG,PRAD,SARC,THYM,UCEC,UCS,UVMKIRC,KIRP,PRAD
ENSG00000225138ENSG00000105245NUMBLKICH,KIRP,LAML,THCA,THYMKIRP
ENSG00000225138ENSG00000106976DNM1KICH,KIRP,LAML,READ,TGCTKIRP
ENSG00000225138ENSG00000135723FHOD1KICH,KIRC,LUAD,PRAD,READ,THCAKIRC
ENSG00000225138ENSG00000203485INF2KICH,KIRC,PAAD,READ,TGCTKIRC
ENSG00000225138ENSG00000014914MTMR11KIRC,KIRP,PAAD,SARC,TGCTKIRC
ENSG00000225138ENSG00000139597N4BP2L1KIRC,KIRP,LAML,PCPG,UVMKIRC
ENSG00000225138ENSG00000167604NFKBIDKIRC,KIRP,LUAD,READ,SARC,THCAKIRC,KIRP
ENSG00000225138ENSG00000182472CAPN12KIRC,KIRP,LUSC,PAAD,READKIRC,KIRP,LUSC,READ
ENSG00000225138ENSG00000054179ENTPD2KIRP,PAAD,READ,STAD,THYMKIRP,READ
ENSG00000225138ENSG00000100068LRP5LKIRP,LUAD,LUSC,PAAD,PRAD,READ,UVMREAD
ENSG00000225138ENSG00000134897BIVMKIRP,LGG,PCPG,TGCT,THCA,UVMKIRP
ENSG00000225138ENSG00000180089TMEM86BKIRP,LAML,MESO,PCPG,TGCT,THCA,UCSKIRP
ENSG00000225138ENSG00000187583PLEKHN1KIRP,LUAD,LUSC,PRAD,READKIRP,LUAD,LUSC,READ
ENSG00000225138ENSG00000241404EGFL8KIRP,LAML,LGG,TGCT,UVMKIRP
ENSG00000225138ENSG00000188130MAPK12LAML,LGG,MESO,PCPG,PRADPRAD
ENSG00000225138ENSG00000012211PRICKLE3LUSC,PAAD,READ,TGCT,THYM,UCSLUSC,READ
ENSG00000225138ENSG00000152669CCNOPAAD,PCPG,READ,THCA,THYMREAD

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA-RBP complex negative regulation
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type
ENSG00000225138ENSG00000003756RBM5exon_skip_382458ENSG00000060971:chr3:38131595-38131638ACAA1ENST00000333167Frame-shiftSARC,PRAD,PCPG,PAAD,THCA
ENSG00000225138ENSG00000004534RBM6exon_skip_382458ENSG00000060971:chr3:38131595-38131638ACAA1ENST00000333167Frame-shiftSARC,PRAD,UCS,PCPG,PAAD,THCA

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000225138.6ENST00000607286.417817550
ENSG00000225138.6ENST00000606319.1138365781
ENSG00000225138.6ENST00000606107.41253762
ENSG00000225138.6ENST00000607005.498250546
ENSG00000225138.6ENST00000606074.17145260
ENSG00000225138.6ENST00000606288.11461042602
ENSG00000225138.6ENST00000534918.1116443790