Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000224805

Summary for LINC00853

Gene summary

Gene information	Ensembl ID	ENSG00000224805
	Gene symbol	LINC00853
	Gene name	long intergenic non-protein coding RNA 853
	HGNC	43716
	Entrez ID	100874253
	Gene type	antisense
	Synonyms	01p33\|LINC00853
	UniProtAcc

Top

Structure and expression level for LINC00853

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000224805	6.827180e+01	2.430346e+00	4.863031e-01	4.997596e+00	5.800000e-07	3.990000e-06	UP	CHOL
ENSG00000224805	1.013484e+02	1.201176e+00	1.153355e-01	1.041463e+01	2.130000e-25	4.590000e-24	UP	THCA
ENSG00000224805	5.194855e+01	1.452091e+00	1.575643e-01	9.215862e+00	3.090000e-20	8.150000e-19	UP	PRAD
ENSG00000224805	5.230211e+01	1.043404e+00	1.124701e-01	9.277166e+00	1.740000e-20	1.150000e-19	UP	BRCA
ENSG00000224805	3.363015e+01	1.260069e+00	1.648098e-01	7.645595e+00	2.080000e-14	1.390000e-13	UP	LUAD
ENSG00000224805	6.222761e+01	2.403064e+00	2.160431e-01	1.112308e+01	9.690000e-29	4.320000e-27	UP	LIHC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000224805	3.244093e-01	5.723537e-15	PRAD	4.460725e-14

Top

lncRNA-Protein interaction for LINC00853

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

Top

lncRNA-DNA interaction for LINC00853

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

NDUFB10,JMJD4,MRPL52,IDH3G,BLOC1S1,C11orf1,NDUFS6,ARL16,PYM1,ATP5F1E,PRDX5,ZBTB8OS,DNAJC4,DNAJC30,MRPL55,TMEM234,C12orf57,MRPS26,NMRAL1,HDDC3,NDUFB8,GPANK1,NDUFS8,PET100,IMP3,FAM98C,NDUFA13,CHCHD5,C1orf56,C1orf122,CDPF1,RRNAD1,SWI5,EIF6,SNF8,HINT2,NAT14,RP11-523H20.5,C1orf35,C19orf53,LSM10,MRPL20,MUTYH,BCL7C,MRPL28,NDUFA11,NPRL2,HSCB,PDZD11,TCEA3,VAMP8,SMIM22,STK16,SMUG1,WDR54,IFT27,TRAPPC2L,ZNHIT1,GFER,PHKG2,FAAP20,NUBP2,GNPTG,HHLA3,PPP1R16A,POLR2J,SWSAP1,COMMD7,COA3,RFXANK,RFNG,SLC66A1,LAMTOR2,RAB13,CLN3,H2AJ,PMM1,METTL27,NDUFA3,COA4,G6PC3,COPS9,MRPL24,COG4,ZMAT5,MICOS13,TAZ,STX10,NAA80,PDZK1IP1,ECI1,NABP2,UQCR11,ACBD4,C1orf50,NAA38,TMEM208,JTB,TBL3,VKORC1,CCDC106,CISD3,ATP5MJ,ENDOV,SLC25A10,PSENEN,DPY30,UBL5,PPIE,UROD,FAM50A,ITPA,NAA10,GAMT,NELFE,ABHD14B,WDR83,METTL23,ALKBH7,MRPL22,MPST,BABAM1,GEMIN6,MRPS34,NDUFB7,MVB12A,MZT2B,PGP,ELMO3,CHMP2A,SYCE1L,MRPS15,PGLS,HDAC10,HEXIM2,SCRN2,ANKS3,NOXA1,ATRAID,MPND,CSNK2B,SMDT1,PIGQ,TEDC1,NDUFA2,DENND6B,AUP1,PEX11G,ZFYVE19,TAF10,STOML1,RNF25,SLC35C2,FDX2,SGF29,HDHD3,MCAT,CYBA,COA8,CENPS,SERF2,PSMB3,HSD3B7,VPS28,COMMD1,MTLN,TRPT1,NIT1,ZNF593,COASY,MRPL57,ARFRP1,CD2BP2,GSS,CIAO2B,MCRIP2,PFDN5,CCS,MRPL27,PSMG3,TRAPPC3,CNFN,UQCR10,FAM234A,CCDC159,MYG1,KRTCAP2,SYCE3,PSMC5,RNF215,NDUFB1,TMEM134,NAT9,POP5,BOLA1,CZIB,ACOT8,ORAI3,TSR3,ABHD14A,MPG,GHDC,SMIM4,YPEL3,NTHL1,CUEDC2,STAP2,METTL26,RPA3,HEXD,NSMCE1,SDHAF2,TUFM,SCAND1,ATP5MC2,PMVK,ANAPC11,CCDC24,TMEM238,DGCR6L,UBXN11,APRT,DUS1L,KRTCAP3,PTRHD1,TOMM7,FDXR,DECR2,SPSB2,PPCDC,CDK5,GPS1,SLC22A18,FASTK,SIRT6,AKR7A2,MECR,RALY,TMEM54,CYB561D2,MRPL54,FAM174C,TMEM187,PCYT2,NDUFAF8,FKBP2,FAM3A,ATP5IF1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

TBL3,LAMTOR2,APITD1,COG4,G6PC3,PEX11G,PSMB3,WBSCR27,PGLS,GPX4,OXLD1,HDHD3,MRPL52,PARK7,CUEDC2,LSM10,C1orf56,PFDN5,THAP7,GPANK1,C2orf81,NSMCE1,CHMP2A,MZT2B,ATRAID,ITPA,COX6A1,CNFN,NDUFB1,VPS28,MRPL24,PSMD4,PRDX5,HINT2,JTB,TMEM134,OCEL1,AURKAIP1,QTRT1,NDUFA3,C14orf2,HSCB,NENF,PPCDC,NAA10,NT5C,FAM98C,FAM234A,ECI1,C12orf10,ATPIF1,ABHD14B,POLR2J,HCFC1R1,C12orf45,BABAM1,SGF29,TRMT112,SLC25A10,COPS6,NMRAL1,TAZ

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for LINC00853

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

QKI,SSH1,PTPN11

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for LINC00853

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000224805	ENSG00000005448	WDR54	BRCA,KIRC,KIRP,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000007541	PIGQ	BRCA,KIRP,LIHC,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000064490	RFXANK	BRCA,CHOL,KIRC,KIRP,LUAD,PRAD,THCA	CHOL
ENSG00000224805	ENSG00000065057	NTHL1	BRCA,CESC,KIRP,LIHC,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000071859	FAM50A	BRCA,CHOL,KIRP,LIHC,PRAD,THCA	LIHC
ENSG00000224805	ENSG00000074071	MRPS34	BRCA,KIRC,KIRP,LIHC,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000077463	SIRT6	BRCA,CHOL,KIRP,PRAD,THCA	CHOL
ENSG00000224805	ENSG00000090971	NAT14	BRCA,CHOL,KIRP,PRAD,THCA	BRCA,CHOL
ENSG00000224805	ENSG00000095906	NUBP2	BRCA,KIRP,LIHC,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000110628	SLC22A18	BRCA,CESC,KIRC,KIRP,LIHC,THCA	BRCA
ENSG00000224805	ENSG00000116586	LAMTOR2	BRCA,CESC,KIRC,KIRP,LIHC,OV,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000118640	VAMP8	BRCA,CESC,CHOL,OV,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000121900	TMEM54	BRCA,CESC,CHOL,KIRP,LUAD,PRAD,THCA,UVM	BRCA,CHOL
ENSG00000224805	ENSG00000127554	GFER	BRCA,KIRP,LIHC,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000130005	GAMT	BRCA,KIRC,KIRP,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000130731	METTL26	BRCA,KIRC,KIRP,LIHC,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000143314	MRPL24	BRCA,KIRC,KIRP,LIHC,LUAD,OV,PRAD,THCA	BRCA,LUAD
ENSG00000224805	ENSG00000143443	C1orf56	BRCA,KIRP,LUAD,OV,THCA	LUAD
ENSG00000224805	ENSG00000143543	JTB	BRCA,CESC,LIHC,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000143793	C1orf35	BRCA,CHOL,KIRC,KIRP,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000152082	MZT2B	BRCA,CESC,CHOL,KIRC,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000153406	NMRAL1	BRCA,CESC,KIRC,KIRP,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000156873	PHKG2	BRCA,CESC,CHOL,KIRP,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000158062	UBXN11	BRCA,CHOL,KIRC,KIRP,THCA	CHOL
ENSG00000224805	ENSG00000159239	RP11-523H20.5	BRCA,CHOL,KIRC,KIRP,PRAD,UVM	CHOL
ENSG00000224805	ENSG00000162910	MRPL55	BRCA,CESC,CHOL,KIRC,KIRP,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000163463	KRTCAP2	BRCA,CHOL,KIRC,KIRP,LUAD,THCA	LUAD
ENSG00000224805	ENSG00000164885	CDK5	BRCA,CHOL,KIRP,LIHC,THCA	BRCA
ENSG00000224805	ENSG00000168096	ANKS3	BRCA,CHOL,KIRC,KIRP,PRAD,THCA	CHOL
ENSG00000224805	ENSG00000169217	CD2BP2	BRCA,CHOL,KIRP,LIHC,THCA	CHOL
ENSG00000224805	ENSG00000171222	SCAND1	BRCA,CESC,KIRP,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000172366	MCRIP2	BRCA,CESC,KIRP,OV,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000175279	CENPS	BRCA,KIRC,KIRP,LIHC,LUAD,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000184207	PGP	BRCA,CESC,KIRP,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000185347	TEDC1	BRCA,CESC,KIRP,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000188603	CLN3	BRCA,CESC,CHOL,KIRC,LIHC,PRAD,THCA	BRCA,LIHC
ENSG00000224805	ENSG00000205155	PSENEN	BRCA,CESC,CHOL,KIRC,KIRP,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000205593	DENND6B	BRCA,CHOL,KIRC,KIRP,THCA	CHOL
ENSG00000224805	ENSG00000217442	SYCE3	BRCA,CESC,CHOL,LUAD,THCA	BRCA,LUAD
ENSG00000224805	ENSG00000228300	FAM174C	BRCA,CESC,KIRP,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000229833	PET100	BRCA,CESC,CHOL,KIRC,KIRP,PRAD,THCA	BRCA
ENSG00000224805	ENSG00000233493	TMEM238	BRCA,CESC,CHOL,KIRC,LIHC,PRAD,THCA	BRCA,PRAD
ENSG00000224805	ENSG00000246705	H2AJ	BRCA,CESC,CHOL,KIRC,KIRP,LIHC,OV,PRAD,THCA	BRCA,PRAD
ENSG00000224805	ENSG00000267795	SMIM22	BRCA,CESC,LUAD,OV,PRAD	BRCA,LUAD,PRAD
ENSG00000224805	ENSG00000111671	SPSB2	CESC,CHOL,LIHC,LUAD,THCA	CHOL,LIHC
ENSG00000224805	ENSG00000157992	KRTCAP3	CESC,CHOL,LUAD,OV,THCA	CHOL,LUAD
ENSG00000224805	ENSG00000165171	METTL27	CESC,CHOL,KIRC,KIRP,LIHC	CHOL
ENSG00000224805	ENSG00000160972	PPP1R16A	CHOL,KIRC,KIRP,LIHC,THCA	LIHC
ENSG00000224805	ENSG00000205078	SYCE1L	CHOL,KIRC,KIRP,LUAD,PRAD,THCA	CHOL,LUAD,PRAD,THCA
ENSG00000224805	ENSG00000162366	PDZK1IP1	KIRC,KIRP,LIHC,OV,PRAD,THCA	LIHC,THCA
ENSG00000224805	ENSG00000102125	TAZ	KIRP,LIHC,LUAD,PRAD,THCA	LIHC

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000224805.2	ENST00000429328.2	74	319	543

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential