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lncRNA: ENSG00000224652 |
Summary for LINC00885 |
Gene summary |
Gene information | Ensembl ID | ENSG00000224652 | Gene symbol | LINC00885 |
Gene name | long intergenic non-protein coding RNA 885 | |
HGNC | 48571 | |
Entrez ID | 401109 | |
Gene type | lincRNA | |
Synonyms | LINC00885|03q29 | |
UniProtAcc |
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Structure and expression level for LINC00885 |
AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000224652 | 1.200166e+02 | -2.382699e+00 | 6.645111e-01 | -3.585642e+00 | 3.362510e-04 | 1.306533e-03 | DOWN | CHOL |
ENSG00000224652 | 3.667205e+02 | 2.119931e+00 | 2.834805e-01 | 7.478224e+00 | 7.530000e-14 | 6.650000e-13 | UP | KICH |
ENSG00000224652 | 3.413301e+02 | 1.278541e+00 | 3.855950e-01 | 3.315761e+00 | 9.139380e-04 | 3.541959e-03 | UP | BLCA |
ENSG00000224652 | 2.381731e+02 | 5.176375e+00 | 1.033924e+00 | 5.006535e+00 | 5.540000e-07 | 1.490000e-05 | UP | CESC |
ENSG00000224652 | 3.515305e+02 | 2.767043e+00 | 2.171619e-01 | 1.274184e+01 | 3.460000e-37 | 5.130000e-36 | UP | LUSC |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
ENSG00000224652 | -3.658499e-01 | 1.345543e-02 | CHOL | 1.527128e-02 |
ENSG00000224652 | 3.631087e-01 | 4.699868e-04 | KICH | 6.950630e-04 |
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lncRNA-Protein interaction for LINC00885 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000224652 | ENST00000457079 | LINC00885 | ENSG00000070476 | ZXDC | 58.03 | 92.3687 | Q2QGD7 | TF | NA |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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