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lncRNA: ENSG00000224189

Summary for HAGLR

Gene summary

Gene information	Ensembl ID	ENSG00000224189
	Gene symbol	HAGLR
	Gene name	HOXD antisense growth-associated long non-coding RNA
	HGNC	43755
	Entrez ID	401022
	Gene type	antisense
	Synonyms	HAGLR\|02q31.1
	UniProtAcc

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Structure and expression level for HAGLR

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000224189	3.987170e+02	3.259092e+00	2.406768e-01	1.354136e+01	8.910000e-42	5.480000e-40	UP	THCA
ENSG00000224189	3.256245e+02	2.213368e+00	2.202768e-01	1.004812e+01	9.360000e-24	2.840000e-22	UP	HNSC
ENSG00000224189	8.144734e+02	-1.276320e+00	2.932125e-01	-4.352883e+00	1.340000e-05	4.830000e-05	DOWN	KIRP
ENSG00000224189	5.660543e+02	2.008953e+00	4.780898e-01	4.202042e+00	2.650000e-05	4.319380e-04	UP	ESCA
ENSG00000224189	1.142602e+03	3.010035e+00	4.842691e-01	6.215626e+00	5.110000e-10	3.930000e-08	UP	PCPG
ENSG00000224189	1.062290e+03	-1.602817e+00	1.746361e-01	-9.178040e+00	4.390000e-20	2.860000e-19	DOWN	LUSC
ENSG00000224189	4.545062e+02	-2.112783e+00	2.292307e-01	-9.216841e+00	3.060000e-20	4.170000e-19	DOWN	COAD
ENSG00000224189	2.649043e+02	6.251591e+00	3.571605e-01	1.750359e+01	1.350000e-68	6.720000e-66	UP	LIHC
ENSG00000224189	3.015973e+02	-2.633889e+00	4.884115e-01	-5.392767e+00	6.940000e-08	1.160000e-06	DOWN	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000224189	-4.188900e-01	4.398534e-05	KICH	8.168706e-05
ENSG00000224189	-4.081849e-01	8.173792e-26	KIRC	1.671912e-24
ENSG00000224189	3.613778e-01	8.752442e-14	LIHC	7.590008e-13
ENSG00000224189	3.024573e-01	1.942689e-13	THCA	1.795858e-12

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lncRNA-Protein interaction for HAGLR

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000224189	ENST00000417086	HAGLR	ENSG00000114982	KANSL3	84.4	91.3038	Q9P2N6	Epi	NA
ENSG00000224189	ENST00000425005	HAGLR	ENSG00000183337	BCOR	40.27	94.3442	Q6W2J9	Epi	NA
ENSG00000224189	ENST00000436126	HAGLR	ENSG00000197879	MYO1C	79.87	91.4302	O00159	Epi	NA
ENSG00000224189	ENST00000436126	HAGLR	ENSG00000084676	NCOA1	73.53	92.8453	Q15788	TF,Epi	Predict
ENSG00000224189	ENST00000417086	HAGLR	ENSG00000197879	MYO1C	67.2	92.4258	O00159	Epi	NA
ENSG00000224189	ENST00000436126	HAGLR	ENSG00000137337	MDC1	60.52	94.4437	Q14676	Epi	NA
ENSG00000224189	ENST00000425005	HAGLR	ENSG00000084676	NCOA1	39.92	91.659	Q15788	TF,Epi	Predict
ENSG00000224189	ENST00000425005	HAGLR	ENSG00000137337	MDC1	33.46	94.1262	Q14676	Epi	NA
ENSG00000224189	ENST00000549329	HAGLR	ENSG00000197879	MYO1C	64.27	90.0604	O00159	Epi	NA
ENSG00000224189	ENST00000549329	HAGLR	ENSG00000137337	MDC1	48.42	91.2389	Q14676	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000224189	ENST00000436126	HAGLR	ENSG00000084676	NCOA1	73.53	92.8713	Q15788	TF,Epi	Predict
ENSG00000224189	ENST00000416928	HAGLR	ENSG00000184481	FOXO4	65.71	92.101	P98177	TF	NA
ENSG00000224189	ENST00000425005	HAGLR	ENSG00000084676	NCOA1	39.92	90.7296	Q15788	TF,Epi	Predict

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000224189	ENST00000436126	HAGLR	ENSG00000163510	CWC22	93.5	92.7707	Q9HCG8	RBP	NA
ENSG00000224189	ENST00000436126	HAGLR	ENSG00000129566	TEP1	82.57	94.5356	Q99973	RBP	NA
ENSG00000224189	ENST00000417086	HAGLR	ENSG00000163510	CWC22	82.24	91.6423	Q9HCG8	RBP	NA
ENSG00000224189	ENST00000417086	HAGLR	ENSG00000129566	TEP1	72.69	93.0594	Q99973	RBP	NA

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lncRNA-DNA interaction for HAGLR

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

COL4A5,PCYOX1,MGAT4A,PREPL,COL4A4,MTMR10,PAQR5,CDC42BPA,PKP4,MDC1,CYS1,FAM168B,STAM2,PAPSS1,UVRAG,RAB11FIP5,CLASP1,ADCY9,RNF144A,IL6R,TESK2,LARP6,CWC22,KANSL3,ATP2B1,LANCL1,SEMA4C,CYTH1,VAMP2,SLC41A1,MPC1,GALNT7,BCOR,POGZ,LRRFIP1,MTURN,ARHGAP19,MTUS1,ASAP3,WDSUB1,FNBP1,LPAR1,PPM1B,SEMA3G,BLZF1,IGSF3,TSN,HDHD2,PATZ1,SESTD1,ATP8A1,IWS1,LCOR,ARVCF,MBP,STRN,PTPN21,TTC21B,KIF1C,MYO1C,TMCC3,ZADH2,TRAK2,CBX7,MAP4K3,ITPKB,COL4A3,INPP1,SLC46A3,RAP1GAP,GGT6,GLTP,CLMN,SECISBP2L,HADHB,SMIM14,USP12,TMPRSS2,GRB14,JUP,SNX1,NCKAP1,LIPH,SLCO2A1,UBXN2A,TAPT1,RMND5A,CYBRD1,FMO5,EMCN,LGR4,CRMP1,NIPAL3,SP3,FARP2,STARD8,GNG7,SNX30,PLPP3,TMEM131,SORT1,ARHGEF37,TEP1,TMEM59,FGFR2,TDRKH,PAIP2B,CNNM2,ATF2

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for HAGLR

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

TBRG4

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for HAGLR

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000224189	ENSG00000070759	TESK2	ACC,COAD,GBM,KIRP,LGG,READ		COAD,READ
ENSG00000224189	ENSG00000070778	PTPN21	ACC,COAD,KIRC,LUSC,READ		COAD,LUSC,READ
ENSG00000224189	ENSG00000071073	MGAT4A	ACC,COAD,KICH,READ,UCS		COAD,READ
ENSG00000224189	ENSG00000071967	CYBRD1	ACC,KIRP,LUSC,READ,UVM		KIRP,LUSC,READ
ENSG00000224189	ENSG00000088280	ASAP3	ACC,COAD,READ,TGCT,UCS		COAD,READ
ENSG00000224189	ENSG00000109586	GALNT7	ACC,COAD,LGG,READ,THCA	THCA	READ
ENSG00000224189	ENSG00000115290	GRB14	ACC,GBM,KICH,KIRC,KIRP		KIRP
ENSG00000224189	ENSG00000116005	PCYOX1	ACC,KICH,KIRC,KIRP,LUSC,TGCT		KIRP,LUSC
ENSG00000224189	ENSG00000129250	KIF1C	ACC,COAD,GBM,LGG,LUSC,READ,TGCT,UVM		LUSC
ENSG00000224189	ENSG00000129422	MTUS1	ACC,COAD,KIRP,LGG,READ		KIRP,READ
ENSG00000224189	ENSG00000130052	STARD8	ACC,KICH,KIRP,LUSC,TGCT		KIRP,LUSC
ENSG00000224189	ENSG00000139508	SLC46A3	ACC,COAD,KICH,LUSC,READ		COAD,LUSC
ENSG00000224189	ENSG00000143061	IGSF3	ACC,COAD,KICH,KIRC,UVM		COAD
ENSG00000224189	ENSG00000143772	ITPKB	ACC,HNSC,KICH,KIRC,KIRP,READ		KIRP,READ
ENSG00000224189	ENSG00000152484	USP12	ACC,KICH,KIRP,LUSC,TGCT,UCS		LUSC
ENSG00000224189	ENSG00000162407	PLPP3	ACC,COAD,KICH,LUSC,READ		COAD,LUSC,READ
ENSG00000224189	ENSG00000163898	LIPH	ACC,COAD,KIRC,READ,THCA	THCA	COAD,READ
ENSG00000224189	ENSG00000166912	MTMR10	ACC,KICH,KIRC,LGG,READ,TGCT		READ
ENSG00000224189	ENSG00000174640	SLCO2A1	ACC,COAD,KIRP,PRAD,READ		COAD,READ
ENSG00000224189	ENSG00000187231	SESTD1	ACC,HNSC,KICH,LUSC,PCPG,TGCT,UVM	PCPG	LUSC
ENSG00000224189	ENSG00000197879	MYO1C	ACC,COAD,KICH,LUSC,READ		LUSC
ENSG00000224189	ENSG00000198121	LPAR1	ACC,COAD,KICH,LGG,READ		COAD,READ
ENSG00000224189	ENSG00000205213	LGR4	ACC,COAD,KICH,KIRC,KIRP,READ		COAD,READ
ENSG00000224189	ENSG00000116209	TMEM59	BLCA,COAD,KICH,KIRC,KIRP,LGG,READ		COAD,READ
ENSG00000224189	ENSG00000057704	TMCC3	COAD,GBM,LGG,PCPG,READ	PCPG	COAD,READ
ENSG00000224189	ENSG00000060762	MPC1	COAD,KICH,KIRC,KIRP,READ,UVM		COAD,READ
ENSG00000224189	ENSG00000066468	FGFR2	COAD,GBM,KICH,KIRC,LGG,LIHC,READ		COAD,READ
ENSG00000224189	ENSG00000070961	ATP2B1	COAD,HNSC,LIHC,READ,TGCT		COAD,READ
ENSG00000224189	ENSG00000075568	TMEM131	COAD,KICH,KIRP,READ,TGCT		COAD
ENSG00000224189	ENSG00000100307	CBX7	COAD,KIRP,LUSC,READ,TGCT		COAD,KIRP,LUSC,READ
ENSG00000224189	ENSG00000124406	ATP8A1	COAD,GBM,LUSC,PCPG,PRAD,TGCT,UVM		COAD,LUSC
ENSG00000224189	ENSG00000131781	FMO5	COAD,KIRC,LUAD,LUSC,READ		COAD,LUSC,READ
ENSG00000224189	ENSG00000137819	PAQR5	COAD,KICH,KIRC,KIRP,LUSC,READ		COAD,KIRP,LUSC,READ
ENSG00000224189	ENSG00000138029	HADHB	COAD,KICH,KIRC,READ,TGCT		COAD
ENSG00000224189	ENSG00000139433	GLTP	COAD,GBM,LGG,LIHC,READ		COAD,READ
ENSG00000224189	ENSG00000148842	CNNM2	COAD,KICH,KIRC,KIRP,READ		COAD,KIRP,READ
ENSG00000224189	ENSG00000160712	IL6R	COAD,LUAD,LUSC,OV,READ,TGCT		COAD,LUSC,READ
ENSG00000224189	ENSG00000162104	ADCY9	COAD,KICH,LUAD,LUSC,READ		COAD,LUSC,READ
ENSG00000224189	ENSG00000163683	SMIM14	COAD,KICH,KIRC,KIRP,READ		COAD,READ
ENSG00000224189	ENSG00000165959	CLMN	COAD,GBM,KIRC,KIRP,LGG,READ,TGCT		COAD,KIRP,READ
ENSG00000224189	ENSG00000167741	GGT6	COAD,KICH,KIRC,KIRP,READ		COAD,KIRP,READ
ENSG00000224189	ENSG00000169762	TAPT1	COAD,GBM,KIRC,LUAD,LUSC,READ		LUSC
ENSG00000224189	ENSG00000183111	ARHGEF37	COAD,GBM,LGG,READ,UVM		COAD,READ
ENSG00000224189	ENSG00000184012	TMPRSS2	COAD,KIRC,KIRP,LUAD,LUSC,READ		COAD,KIRP,LUSC,READ
ENSG00000224189	ENSG00000220205	VAMP2	COAD,KICH,KIRC,READ,SARC		COAD,READ
ENSG00000224189	ENSG00000099889	ARVCF	ESCA,GBM,PCPG,SARC,TGCT,UVM	PCPG
ENSG00000224189	ENSG00000072832	CRMP1	GBM,KICH,PCPG,STAD,THCA	PCPG
ENSG00000224189	ENSG00000138593	SECISBP2L	GBM,LGG,LUSC,READ,TGCT		LUSC,READ
ENSG00000224189	ENSG00000138801	PAPSS1	GBM,KIRC,KIRP,LGG,LIHC,PCPG	PCPG
ENSG00000224189	ENSG00000144283	PKP4	GBM,KICH,KIRC,LGG,PCPG,UVM	PCPG
ENSG00000224189	ENSG00000151692	RNF144A	GBM,KIRC,KIRP,LGG,LIHC,READ	LIHC	READ
ENSG00000224189	ENSG00000180354	MTURN	GBM,KIRC,KIRP,LGG,TGCT		KIRP
ENSG00000224189	ENSG00000187239	FNBP1	GBM,LGG,LIHC,READ,TGCT		READ
ENSG00000224189	ENSG00000188153	COL4A5	GBM,KICH,KIRC,KIRP,LGG		KIRP
ENSG00000224189	ENSG00000081052	COL4A4	KICH,KIRC,KIRP,LUAD,LUSC		KIRP,LUSC
ENSG00000224189	ENSG00000124831	LRRFIP1	KICH,KIRC,KIRP,LUSC,READ		LUSC
ENSG00000224189	ENSG00000134243	SORT1	KICH,KIRC,KIRP,LGG,LUSC		LUSC
ENSG00000224189	ENSG00000169031	COL4A3	KICH,KIRC,KIRP,LUAD,LUSC		KIRP,LUSC
ENSG00000224189	ENSG00000176533	GNG7	KICH,KIRC,KIRP,LUAD,LUSC		KIRP,LUSC
ENSG00000224189	ENSG00000205795	CYS1	KICH,KIRC,KIRP,LUSC,READ		LUSC,READ
ENSG00000224189	ENSG00000076864	RAP1GAP	KIRC,KIRP,LUAD,LUSC,UCS		KIRP,LUSC
ENSG00000224189	ENSG00000164035	EMCN	KIRC,KIRP,LUSC,READ,UVM		KIRP,LUSC,READ

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000224189	ENST00000416928	TBRG4	ENSG00000136270	ENST00000258770	-0.1318	117	LUSC,READ	-
ENSG00000224189	ENST00000416928	TBRG4	ENSG00000136270	ENST00000361278	-0.1318	117	LUSC,READ	-
ENSG00000224189	ENST00000416928	TBRG4	ENSG00000136270	ENST00000395655	-0.1318	117	LUSC,READ	-
ENSG00000224189	ENST00000416928	TBRG4	ENSG00000136270	ENST00000494076	-0.1318	117	LUSC,READ	-
ENSG00000224189	ENST00000436126	TBRG4	ENSG00000136270	ENST00000258770	-0.1672	106	LUSC,READ	-
ENSG00000224189	ENST00000436126	TBRG4	ENSG00000136270	ENST00000361278	-0.1672	106	LUSC,READ	-
ENSG00000224189	ENST00000436126	TBRG4	ENSG00000136270	ENST00000395655	-0.1672	106	LUSC,READ	-
ENSG00000224189	ENST00000436126	TBRG4	ENSG00000136270	ENST00000494076	-0.1672	106	LUSC,READ	-
ENSG00000224189	ENST00000447538	TBRG4	ENSG00000136270	ENST00000258770	-0.1710	1	LUSC,READ	-
ENSG00000224189	ENST00000447538	TBRG4	ENSG00000136270	ENST00000361278	-0.1710	1	LUSC,READ	-
ENSG00000224189	ENST00000447538	TBRG4	ENSG00000136270	ENST00000395655	-0.1710	1	LUSC,READ	-
ENSG00000224189	ENST00000447538	TBRG4	ENSG00000136270	ENST00000494076	-0.1710	1	LUSC,READ	-
ENSG00000224189	ENST00000546798	TBRG4	ENSG00000136270	ENST00000258770	-0.1917	1	LUSC,READ	-
ENSG00000224189	ENST00000546798	TBRG4	ENSG00000136270	ENST00000361278	-0.1917	1	LUSC,READ	-
ENSG00000224189	ENST00000546798	TBRG4	ENSG00000136270	ENST00000395655	-0.1917	1	LUSC,READ	-
ENSG00000224189	ENST00000546798	TBRG4	ENSG00000136270	ENST00000494076	-0.1917	1	LUSC,READ	-
ENSG00000224189	ENST00000413969	TBRG4	ENSG00000136270	ENST00000258770	-0.1203	1	LUSC,READ	-
ENSG00000224189	ENST00000413969	TBRG4	ENSG00000136270	ENST00000361278	-0.1203	1	LUSC,READ	-
ENSG00000224189	ENST00000413969	TBRG4	ENSG00000136270	ENST00000395655	-0.1203	1	LUSC,READ	-
ENSG00000224189	ENST00000413969	TBRG4	ENSG00000136270	ENST00000494076	-0.1203	1	LUSC,READ	-
ENSG00000224189	ENST00000552156	TBRG4	ENSG00000136270	ENST00000258770	-0.1213	15	LUSC,READ	-
ENSG00000224189	ENST00000552156	TBRG4	ENSG00000136270	ENST00000361278	-0.1213	15	LUSC,READ	-
ENSG00000224189	ENST00000552156	TBRG4	ENSG00000136270	ENST00000395655	-0.1213	15	LUSC,READ	-
ENSG00000224189	ENST00000552156	TBRG4	ENSG00000136270	ENST00000494076	-0.1213	15	LUSC,READ	-
ENSG00000224189	ENST00000456876	TBRG4	ENSG00000136270	ENST00000258770	-0.1482	56	LUSC,READ	-
ENSG00000224189	ENST00000456876	TBRG4	ENSG00000136270	ENST00000361278	-0.1482	56	LUSC,READ	-
ENSG00000224189	ENST00000456876	TBRG4	ENSG00000136270	ENST00000395655	-0.1482	56	LUSC,READ	-
ENSG00000224189	ENST00000456876	TBRG4	ENSG00000136270	ENST00000494076	-0.1482	57	LUSC,READ	-
ENSG00000224189	ENST00000425005	TBRG4	ENSG00000136270	ENST00000258770	-0.1201	70	LUSC,READ	-
ENSG00000224189	ENST00000425005	TBRG4	ENSG00000136270	ENST00000361278	-0.1201	70	LUSC,READ	-
ENSG00000224189	ENST00000425005	TBRG4	ENSG00000136270	ENST00000395655	-0.1201	70	LUSC,READ	-
ENSG00000224189	ENST00000425005	TBRG4	ENSG00000136270	ENST00000494076	-0.1201	70	LUSC,READ	-
ENSG00000224189	ENST00000452365	TBRG4	ENSG00000136270	ENST00000258770	-0.1053	152	LUSC,READ	-
ENSG00000224189	ENST00000452365	TBRG4	ENSG00000136270	ENST00000361278	-0.1053	152	LUSC,READ	-
ENSG00000224189	ENST00000452365	TBRG4	ENSG00000136270	ENST00000395655	-0.1053	152	LUSC,READ	-
ENSG00000224189	ENST00000452365	TBRG4	ENSG00000136270	ENST00000494076	-0.1053	152	LUSC,READ	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000224189.5	ENST00000416928.5	117	26	379
ENSG00000224189.5	ENST00000417086.4	192	34	612
ENSG00000224189.5	ENST00000547207.1	69	887	678
ENSG00000224189.5	ENST00000436126.4	56	277	447
ENSG00000224189.5	ENST00000447538.5	56	478	648
ENSG00000224189.5	ENST00000549329.4	56	285	455
ENSG00000224189.5	ENST00000546798.4	56	39	209
ENSG00000224189.5	ENST00000413969.4	56	314	484
ENSG00000224189.5	ENST00000552156.4	65	2	199
ENSG00000224189.5	ENST00000456876.1	56	92	262
ENSG00000224189.5	ENST00000425005.4	132	40	438
ENSG00000224189.5	ENST00000452365.1	73	11	232

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential