lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CAVIN1,EMP3,EHD2,TUBB6,MSN,COPZ2,NXN | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000224093 | ENST00000446684 | exon_skip_98384 | chr12:124327408-124327633 | -23.84 | -0.1084 | NCOR2 | ENST00000405201 | In-frame | ENSG00000224093 | ENST00000412628 | exon_skip_380574 | chr3:191375061-191375589 | -20.48 | -0.1280 | CCDC50 | ENST00000392456 | In-frame | ENSG00000224093 | ENST00000446684 | exon_skip_423795 | chr4:55888887-55888932 | -8.25 | -0.2230 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | ENSG00000224093 | ENST00000446684 | exon_skip_461111 | chr6:90544551-90544632 | -10.78 | -0.2073 | MAP3K7 | ENST00000369329 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000224093 | ENST00000446684 | exon_skip_376144 | chr3:100311832-100311877 | -7.28 | -0.2696 | TBC1D23 | ENST00000394144 | In-frame | ENSG00000224093 | ENST00000446684 | exon_skip_382356 | chr3:37091466-37091538 | -8.58 | -0.1826 | LRRFIP2 | ENST00000336686 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000224093 | ENST00000431770 | EMP3 | ENSG00000142227 | ENST00000270221 | -0.2511 | 18 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000431770 | EMP3 | ENSG00000142227 | ENST00000596315 | -0.2511 | 18 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000431770 | EMP3 | ENSG00000142227 | ENST00000599255 | -0.1061 | 117 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000431770 | EMP3 | ENSG00000142227 | ENST00000597279 | -0.2511 | 18 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000431770 | TUBB6 | ENSG00000176014 | ENST00000591909 | -0.1018 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000431770 | TUBB6 | ENSG00000176014 | ENST00000590388 | -0.1857 | 103 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000431770 | TUBB6 | ENSG00000176014 | ENST00000586653 | -0.1116 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000431770 | TUBB6 | ENSG00000176014 | ENST00000592683 | -0.2713 | 73 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000431770 | TUBB6 | ENSG00000176014 | ENST00000590967 | -0.8410 | 384 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000431770 | TUBB6 | ENSG00000176014 | ENST00000586691 | -0.2699 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | EMP3 | ENSG00000142227 | ENST00000270221 | -0.4075 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | EMP3 | ENSG00000142227 | ENST00000596315 | -0.4075 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | EMP3 | ENSG00000142227 | ENST00000599255 | -0.1017 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | EMP3 | ENSG00000142227 | ENST00000597279 | -0.4075 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | TUBB6 | ENSG00000176014 | ENST00000590388 | -0.1857 | 52 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | TUBB6 | ENSG00000176014 | ENST00000586653 | -0.1022 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | TUBB6 | ENSG00000176014 | ENST00000592683 | -0.2713 | 22 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | TUBB6 | ENSG00000176014 | ENST00000590967 | -0.4260 | 310 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | TUBB6 | ENSG00000176014 | ENST00000586691 | -0.3357 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000427243 | CAVIN1 | ENSG00000177469 | ENST00000357037 | -0.1196 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000417401 | EMP3 | ENSG00000142227 | ENST00000270221 | -0.4075 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000417401 | EMP3 | ENSG00000142227 | ENST00000596315 | -0.4075 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000417401 | EMP3 | ENSG00000142227 | ENST00000599255 | -0.1151 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000417401 | EMP3 | ENSG00000142227 | ENST00000597279 | -0.4075 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000417401 | TUBB6 | ENSG00000176014 | ENST00000591909 | -0.1190 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000417401 | TUBB6 | ENSG00000176014 | ENST00000590388 | -0.1857 | 52 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000417401 | TUBB6 | ENSG00000176014 | ENST00000592683 | -0.2713 | 22 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000417401 | TUBB6 | ENSG00000176014 | ENST00000590967 | -0.2016 | 19 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000417401 | TUBB6 | ENSG00000176014 | ENST00000586691 | -0.3357 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | EHD2 | ENSG00000024422 | ENST00000263277 | -0.1040 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | EHD2 | ENSG00000024422 | ENST00000538399 | -0.1292 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | EHD2 | ENSG00000024422 | ENST00000596225 | -0.1191 | 1 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | TUBB6 | ENSG00000176014 | ENST00000317702 | -0.1048 | 52 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | TUBB6 | ENSG00000176014 | ENST00000591909 | -0.1089 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | TUBB6 | ENSG00000176014 | ENST00000590388 | -0.1782 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | TUBB6 | ENSG00000176014 | ENST00000586653 | -0.1205 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | TUBB6 | ENSG00000176014 | ENST00000586810 | -0.1205 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | TUBB6 | ENSG00000176014 | ENST00000592683 | -0.1006 | 11 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | TUBB6 | ENSG00000176014 | ENST00000590967 | -0.6371 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | TUBB6 | ENSG00000176014 | ENST00000591208 | -0.1268 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | TUBB6 | ENSG00000176014 | ENST00000586691 | -0.1089 | 38 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000412628 | CAVIN1 | ENSG00000177469 | ENST00000357037 | -0.1224 | 1 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000446684 | EMP3 | ENSG00000142227 | ENST00000270221 | -0.2736 | 404 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000446684 | EMP3 | ENSG00000142227 | ENST00000596315 | -0.2736 | 404 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000446684 | EMP3 | ENSG00000142227 | ENST00000597279 | -0.2736 | 404 | KIRP | UCEC,LUAD | ENSG00000224093 | ENST00000446684 | TUBB6 | ENSG00000176014 | ENST00000590388 | -0.1523 | 586 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000446684 | TUBB6 | ENSG00000176014 | ENST00000592683 | -0.1301 | 6 | CHOL | UCEC,LUAD | ENSG00000224093 | ENST00000446684 | TUBB6 | ENSG00000176014 | ENST00000590967 | -0.1565 | 636 | CHOL | UCEC,LUAD |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000224093.4 | ENST00000431770.1 | 106 | 57 | 377 | ENSG00000224093.4 | ENST00000427243.4 | 111 | 22 | 357 | ENSG00000224093.4 | ENST00000417401.1 | 93 | 25 | 306 | ENSG00000224093.4 | ENST00000412628.1 | 93 | 25 | 306 | ENSG00000224093.4 | ENST00000446684.1 | 51 | 13 | 168 |
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