 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | TRIR,RPS17,SCNM1,MCM7,PSMB7,PET100,PRR3,WDR83OS,IP6K2,SNRPD2,TAF1D,KATNBL1,RPL23,INO80C,LMBR1L,BANF1,BCL7C,KLHDC4,ARPC5L,FRA10AC1,CENATAC,RPL13A,GLMN,SNRPA,ANKRD10,MSANTD2,RPL37A,FAM200A,PMF1,TATDN1,SURF2,COQ4,TRIM13,RBMX,SNRPB,CCNB1IP1,RNPS1,CWC15,ILKAP,CEP89,UBL5,HMGB1,RPS8,RPS11,MED27,SF3B6,MRRF,ITGB3BP,GABPB1,TMEM258,SBK1,RPAIN,STX8,BTF3,MAF1,ING4,ZNF22,TBC1D7,DYNLT2,THYN1,TTF1,PFDN6,FPGS,THOC6,POLR2D,PQBP1,MEX3A,ZNF48,RPL35,C12orf76,RNF25,C18orf21,TIGD1,HSPBAP1,YAE1,RPL36A,RPS6,RPS10,SRSF2,VPS28,HMGN1,SUMO2,TIA1,EIF3H,PAFAH1B3,EEF1D,RPS24,PTOV1,TEX10,PFDN5,PSMG2,HMGN3,TRMT13,ZMYND19,DUSP28,NACA,USP3,CZIB,LUC7L,MBTD1,COA5,HDAC8,DPH7,WDR33,ZNF69,HINFP,KHDC4,NAE1,MCRIP1,SFPQ,RP9,ELP2,NOSIP,RSL24D1,IMMP1L | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | SCNM1,DPH7,ZNF48,FAM195B,RPL35,ARPC5L,COMMD3,SBK1,TIA1,NOSIP,BANF1,MCM7,GLMN,KLHDC4,RPSA,ING4,VPS28,KIAA0907,ZNF69,SNRPB,ZMYND19,INO80C,CEP89,SUMO2,FRA10AC1,POLR2D | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000224020 | hsa-mir-22 | ENST00000429139 | chr9:124658554-124658630 | 169.00 | -66.43 | 80 | NA | | ENSG00000224020 | hsa-mir-22 | ENST00000429139 | chr9:124658890-124658986 | 153.00 | -80.69 | 93 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000224020 | ENSG00000079462 | PAFAH1B3 | CHOL,GBM,LGG,THCA,THYM | CHOL,THCA | | | ENSG00000224020 | ENSG00000099385 | BCL7C | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000121289 | CEP89 | CHOL,LAML,LGG,THYM,UCS | CHOL | | | ENSG00000224020 | ENSG00000123349 | PFDN5 | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000124614 | RPS10 | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000125691 | RPL23 | CHOL,GBM,LGG,SKCM,THCA,THYM,UCS | GBM | | | ENSG00000224020 | ENSG00000125743 | SNRPD2 | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000125835 | SNRPB | CHOL,GBM,LGG,THCA,THYM | CHOL,GBM | | | ENSG00000224020 | ENSG00000132680 | KHDC4 | CHOL,GBM,LAML,LGG,SKCM | CHOL | | | ENSG00000224020 | ENSG00000134825 | TMEM258 | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000136942 | RPL35 | CHOL,GBM,LGG,SKCM,THCA,THYM,UCS | GBM | | | ENSG00000224020 | ENSG00000137154 | RPS6 | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000140455 | USP3 | CHOL,GBM,LGG,UCEC,UCS | GBM | | | ENSG00000224020 | ENSG00000142534 | RPS11 | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000142541 | RPL13A | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000142856 | ITGB3BP | CHOL,GBM,LAML,LGG,THYM,UCEC | GBM | | | ENSG00000224020 | ENSG00000142937 | RPS8 | CHOL,GBM,LGG,SKCM,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000163156 | SCNM1 | CHOL,GBM,LGG,THCA,THYM | CHOL | | | ENSG00000224020 | ENSG00000166012 | TAF1D | CHOL,LAML,LGG,THCA,UCEC | CHOL | | | ENSG00000224020 | ENSG00000166508 | MCM7 | CHOL,GBM,LGG,THCA,THYM | CHOL,GBM | | | ENSG00000224020 | ENSG00000175334 | BANF1 | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000188322 | SBK1 | CHOL,LGG,SKCM,THYM,UCS | CHOL | | | ENSG00000224020 | ENSG00000198258 | UBL5 | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000205581 | HMGN1 | CHOL,GBM,LGG,THCA,THYM | GBM | | | ENSG00000224020 | ENSG00000241127 | YAE1 | CHOL,GBM,LAML,LGG,SKCM,UCEC | GBM | | | ENSG00000224020 | ENSG00000241343 | RPL36A | CHOL,GBM,LGG,SKCM,THCA,THYM | CHOL,GBM | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000224020.1 | ENST00000429139.1 | 46 | 138 | 1 |
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