 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,ZNF16,SLIRP,GLI4,THAP4,MYPOP,IRF3,CIRBP,DDX56,IMP3,TIGD5,MZF1,NRF1,TRUB2,CXXC5,ZNF77,CENPB,ZFP14,SNRPA,LSM3,LSM5,EIF3G,CENPT,ZGLP1,MRM1,SUGP1,DBP,LSM4,RBM4B,CREB3,TCFL5,RNPS1,ERAL1,NR2F6,ZBTB3,CWC15,CPSF4,PPIE,SF3B6,NELFE,DHX58,THAP9,USF1,ZNF34,PATZ1,CSTF1,HSF1,PHF1,THYN1,DEAF1,TGIF2,DDX49,HSF4,THOC6,DZIP3,RBM42,ZFP62,ZNF48,REXO4,TIGD1,RBM10,DDX51,MBD3,PCBP4,THAP3,MESP1,UNC50,FIZ1,ZNF3,STAU1,ZNF18,EIF2D,GPBP1,C1D,SOX12,HMGN3,KHDC1,E2F1,GMEB2,THAP8,LSM2,PIN1,RXRB,RRP7A,NAIF1,HINFP,XPA,THOC7,TFDP2,USF2,RALY,TDRKH | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF48,NR2F6,RRP7A,MZF1,EIF3G,LSM2,CENPB,ZNF18,E4F1,DDX49,PATZ1,ZNF3,THAP9,RBMX2,RBM42,RBM6,EIF2D,USF2,ZNF30,STAU1,THAP3,CIRBP,SRP14 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CPSF2,ATF1,STAT6,TEP1,GLYR1,SON,BAZ2A,BACH1,MYC,DNMT1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000223891 | ENST00000442383 | exon_skip_26444 | chr1:46688352-46688544 | -14.87 | -0.1352 | EFCAB14 | ENST00000371933 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_500548 | chr9:131494404-131494486 | -14.29 | -0.2198 | PRRC2B | ENST00000357304 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_150854 | chr17:32366664-32366757 | -11.04 | -0.1648 | ZNF207 | ENST00000321233 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_460899 | chr6:85538837-85538864 | -4.78 | -0.1992 | SNX14 | ENST00000314673 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_462554 | chr6:136267028-136267175 | -15.71 | -0.1091 | BCLAF1 | ENST00000531224 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000223891 | ENST00000623343 | exon_skip_131398 | chr15:101286213-101286293 | -11.68 | -0.2485 | SNRPA1 | ENST00000254193 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_148110 | chr17:4892401-4892512 | -16.40 | -0.1976 | MINK1 | ENST00000355280 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_432617 | chr4:151144219-151144288 | -11.46 | -0.1942 | SH3D19 | ENST00000304527,ENST00000409252 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_132355 | chr16:1786756-1786955 | -22.63 | -0.1137 | NUBP2 | ENST00000262302 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_319223 | chr19:43526200-43526349 | -23.35 | -0.1914 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_374375 | chr3:49675182-49675309 | -13.93 | -0.1142 | APEH | ENST00000296456 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_7523 | chr1:78660553-78660654 | -12.49 | -0.1643 | IFI44 | ENST00000370747 | Frame-shift | | ENSG00000223891 | ENST00000442383 | exon_skip_41841 | chr10:68756272-68756483 | -29.32 | -0.1496 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_76520 | chr11:85990249-85990399 | -13.91 | -0.1159 | PICALM | ENST00000393346 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_106783 | chr14:55673171-55673255 | -12.56 | -0.1744 | KTN1 | ENST00000395314 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_309977 | chr19:49667018-49667161 | -15.25 | -0.1425 | BCL2L12 | ENST00000246785 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_16568 | chr1:201989382-201989531 | -13.89 | -0.1389 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_86034 | chr12:98544229-98544349 | -13.81 | -0.1315 | TMPO | ENST00000556029 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_339830 | chr2:69423581-69423717 | -13.96 | -0.1246 | NFU1 | ENST00000410022 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_436498 | chr5:96729152-96729209 | -7.71 | -0.4283 | CAST | ENST00000341926,ENST00000395813 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_467017 | chr7:74190246-74190306 | -9.37 | -0.2928 | EIF4H | ENST00000265753 | In-frame | | ENSG00000223891 | ENST00000623343 | exon_skip_300663 | chr19:1425877-1425960 | -10.88 | -0.1674 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_287763 | chr17:28884224-28884315 | -11.67 | -0.1357 | FLOT2 | ENST00000394908 | Frame-shift | | ENSG00000223891 | ENST00000623343 | exon_skip_324294 | chr2:27774423-27774530 | -11.72 | -0.1184 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000223891 | ENST00000435163 | exon_skip_81515 | chr12:42351884-42352049 | -16.29 | -0.1381 | PPHLN1 | ENST00000395568 | In-frame |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000223891 | hsa-mir-1307 | ENST00000439943 | chr20:44211532-44211685 | 237.00 | -122.83 | 157 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000439943 | chr20:44211112-44211264 | 236.00 | -124.04 | 141 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000439943 | chr20:44211282-44211443 | 222.00 | -119.24 | 157 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000439943 | chr20:44211827-44212001 | 215.00 | -118.81 | 166 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000439943 | chr20:44212026-44212171 | 215.00 | -122.38 | 143 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000439943 | chr20:44210961-44211125 | 208.00 | -128.96 | 163 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000439943 | chr20:44212191-44212339 | 203.00 | -133.53 | 158 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000437730 | chr20:44211686-44211839 | 237.00 | -122.83 | 157 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000437730 | chr20:44211268-44211418 | 224.00 | -120.97 | 152 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000437730 | chr20:44211436-44211597 | 222.00 | -119.24 | 157 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000437730 | chr20:44211981-44212155 | 215.00 | -118.81 | 166 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000437730 | chr20:44212180-44212325 | 215.00 | -122.38 | 143 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000437730 | chr20:44212345-44212493 | 203.00 | -133.53 | 158 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000437730 | chr20:44210993-44211125 | 198.00 | -118.66 | 131 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000437730 | chr20:44211112-44211250 | 160.00 | -119.93 | 131 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000442383 | chr20:44211083-44211222 | 237.00 | -150.11 | 148 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000442383 | chr20:44211695-44211848 | 237.00 | -122.83 | 157 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000442383 | chr20:44211445-44211606 | 222.00 | -119.24 | 157 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000442383 | chr20:44211229-44211388 | 216.00 | -140.61 | 160 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000442383 | chr20:44211990-44212164 | 215.00 | -118.81 | 166 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000442383 | chr20:44212189-44212334 | 215.00 | -122.38 | 143 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000442383 | chr20:44212354-44212502 | 203.00 | -133.53 | 158 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000435163 | chr20:44211475-44211630 | 221.00 | -130.51 | 159 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000435163 | chr20:44211256-44211404 | 215.00 | -127.82 | 147 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000435163 | chr20:44211701-44211859 | 214.00 | -114.79 | 160 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000623343 | chr20:44215394-44215544 | 224.00 | -120.97 | 152 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000623343 | chr20:44215562-44215723 | 222.00 | -119.24 | 157 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000623343 | chr20:44215006-44215161 | 221.00 | -130.51 | 159 | NA | | ENSG00000223891 | hsa-mir-1307 | ENST00000623343 | chr20:44215159-44215318 | 209.00 | -125.05 | 161 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44211847-44211935 | 182.00 | -65.40 | 74 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44212024-44212114 | 177.00 | -65.12 | 81 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44212223-44212313 | 172.00 | -86.20 | 88 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44211046-44211130 | 171.00 | -76.85 | 86 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44211201-44211283 | 168.00 | -76.00 | 85 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44211607-44211691 | 164.00 | -73.15 | 79 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44211420-44211508 | 162.00 | -86.04 | 84 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44211492-44211570 | 160.00 | -76.00 | 72 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44211291-44211381 | 159.00 | -68.28 | 92 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000439943 | chr20:44212098-44212176 | 147.00 | -81.36 | 70 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44212001-44212089 | 182.00 | -65.40 | 74 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44212178-44212268 | 177.00 | -65.12 | 81 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44212377-44212467 | 172.00 | -86.20 | 88 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44211046-44211130 | 171.00 | -76.85 | 86 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44211355-44211437 | 168.00 | -76.00 | 85 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44211761-44211845 | 164.00 | -73.15 | 79 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44211574-44211662 | 162.00 | -86.04 | 84 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44211646-44211724 | 160.00 | -76.00 | 72 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44211445-44211535 | 159.00 | -68.28 | 92 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44211180-44211274 | 155.00 | -74.47 | 88 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44211269-44211342 | 151.00 | -65.41 | 81 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000437730 | chr20:44212252-44212330 | 147.00 | -81.36 | 70 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44211163-44211244 | 189.00 | -77.83 | 77 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44212010-44212098 | 182.00 | -65.40 | 74 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44212187-44212277 | 177.00 | -65.12 | 81 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44212386-44212476 | 172.00 | -86.20 | 88 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44211364-44211446 | 168.00 | -76.00 | 85 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44211770-44211854 | 164.00 | -73.15 | 79 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44211583-44211671 | 162.00 | -86.04 | 84 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44211655-44211733 | 160.00 | -76.00 | 72 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44211454-44211544 | 159.00 | -68.28 | 92 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44211083-44211150 | 147.00 | -66.90 | 82 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000442383 | chr20:44212261-44212339 | 147.00 | -81.36 | 70 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000435163 | chr20:44211435-44211517 | 205.00 | -77.74 | 80 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000435163 | chr20:44211712-44211796 | 177.00 | -61.17 | 82 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000435163 | chr20:44211796-44211878 | 168.00 | -76.00 | 85 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000435163 | chr20:44211593-44211668 | 165.00 | -83.36 | 79 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000435163 | chr20:44211343-44211433 | 163.00 | -76.17 | 88 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000623343 | chr20:44214966-44215048 | 205.00 | -77.74 | 80 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000623343 | chr20:44215481-44215563 | 168.00 | -76.00 | 85 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000623343 | chr20:44215124-44215199 | 165.00 | -83.36 | 79 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000623343 | chr20:44215571-44215661 | 159.00 | -68.28 | 92 | NA | | ENSG00000223891 | hsa-mir-22 | ENST00000623343 | chr20:44215338-44215428 | 154.00 | -68.99 | 93 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44211071-44211174 | 209.00 | -92.10 | 102 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44211452-44211553 | 202.00 | -111.76 | 102 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44211902-44212005 | 198.00 | -93.83 | 103 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44211306-44211407 | 196.00 | -91.19 | 100 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44212141-44212238 | 176.00 | -88.01 | 95 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44211621-44211716 | 175.00 | -94.24 | 97 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44211196-44211285 | 162.00 | -86.46 | 91 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44210967-44211070 | 153.00 | -95.76 | 90 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44212048-44212146 | 152.00 | -92.85 | 86 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000439943 | chr20:44212258-44212360 | 149.00 | -113.58 | 104 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44211071-44211174 | 209.00 | -92.10 | 102 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44211606-44211707 | 202.00 | -111.76 | 102 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44212056-44212159 | 198.00 | -93.83 | 103 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44211460-44211561 | 196.00 | -91.19 | 100 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44212295-44212392 | 176.00 | -88.01 | 95 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44211775-44211870 | 175.00 | -94.24 | 97 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44211322-44211418 | 170.00 | -88.46 | 81 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44211212-44211298 | 168.00 | -79.37 | 90 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44212202-44212300 | 152.00 | -92.85 | 86 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000437730 | chr20:44212412-44212514 | 149.00 | -113.58 | 104 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44211615-44211716 | 202.00 | -111.76 | 102 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44212065-44212168 | 198.00 | -93.83 | 103 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44211469-44211570 | 196.00 | -91.19 | 100 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44212304-44212401 | 176.00 | -88.01 | 95 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44211784-44211879 | 175.00 | -94.24 | 97 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44211212-44211312 | 169.00 | -97.68 | 99 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44211083-44211170 | 168.00 | -89.59 | 85 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44211336-44211427 | 166.00 | -89.97 | 94 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44212211-44212309 | 152.00 | -92.85 | 86 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000442383 | chr20:44212421-44212523 | 149.00 | -113.58 | 104 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000435163 | chr20:44211350-44211453 | 206.00 | -96.59 | 91 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000435163 | chr20:44211585-44211677 | 188.00 | -105.31 | 98 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000435163 | chr20:44211761-44211859 | 184.00 | -90.89 | 95 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000435163 | chr20:44211270-44211368 | 177.00 | -97.60 | 85 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000435163 | chr20:44211495-44211584 | 151.00 | -82.42 | 89 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000623343 | chr20:44214899-44214984 | 202.00 | -87.49 | 86 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000623343 | chr20:44215586-44215687 | 196.00 | -91.19 | 100 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000623343 | chr20:44215116-44215208 | 188.00 | -105.31 | 98 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000623343 | chr20:44215448-44215544 | 170.00 | -88.46 | 81 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000623343 | chr20:44215338-44215424 | 168.00 | -79.37 | 90 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000623343 | chr20:44215026-44215115 | 151.00 | -82.42 | 89 | NA | | ENSG00000223891 | hsa-mir-584 | ENST00000623343 | chr20:44215232-44215333 | 143.00 | -80.24 | 94 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_366673 | ENSG00000223891.4 | chr20 | 44214923 | + | lincRNA | OSER1-AS1 | ENST00000623343.1 | lincRNA | OSER1-AS1-005 | | LncEditing_366762 | ENSG00000223891.4 | chr20 | 44225943 | + | lincRNA | OSER1-AS1 | ENST00000442383.1 | lincRNA | OSER1-AS1-001 |
| Edited-associated DElncRNAs in cancer. |
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| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000223891 | LncEditing_366673 | LIHC | chr20_44214923_+ | 6.296655e+00 | 4.370289e+00 | 1.898049e+00 | 5.734121e+00 | 9.801936e-09 | 1.557808e-08 | UP | | ENSG00000223891 | LncEditing_366673 | KIRC | chr20_44214923_+ | 5.797941e+00 | 5.033938e+00 | 4.905491e+00 | 5.228750e+00 | 1.706601e-07 | 2.232402e-07 | UP | | ENSG00000223891 | LncEditing_366673 | CHOL | chr20_44214923_+ | 5.291669e+00 | 3.832810e+00 | 2.149057e+00 | 2.138432e+00 | 3.248167e-02 | 3.637947e-02 | UP | | ENSG00000223891 | LncEditing_366673 | OV | chr20_44214923_+ | 5.277261e+00 | 4.968416e+00 | 1.149379e+01 | 2.041702e+00 | 4.118110e-02 | 4.138363e-02 | UP | | ENSG00000223891 | LncEditing_366762 | OV | chr20_44225943_+ | 6.108363e+00 | 4.796342e+00 | 2.866551e+00 | 3.918469e+00 | 8.911325e-05 | 1.026837e-04 | UP | | ENSG00000223891 | LncEditing_366673 | STAD | chr20_44214923_+ | 3.006303e+00 | 1.811352e+00 | 1.368132e+00 | 6.590208e+00 | 4.392116e-11 | 7.559507e-11 | UP | | ENSG00000223891 | LncEditing_366762 | STAD | chr20_44225943_+ | 3.135694e+00 | 1.882382e+00 | 1.358279e+00 | 4.780324e+00 | 1.750131e-06 | 2.173623e-06 | UP | | ENSG00000223891 | LncEditing_366673 | BRCA | chr20_44214923_+ | 7.227116e+00 | 5.607100e+00 | 2.731007e+00 | 5.607020e+00 | 2.058393e-08 | 2.320080e-08 | UP | | ENSG00000223891 | LncEditing_366673 | ESCA | chr20_44214923_+ | 2.564717e+00 | 1.418337e+00 | 1.170140e+00 | 4.244469e+00 | 2.191119e-05 | 2.947744e-05 | UP | | ENSG00000223891 | LncEditing_366762 | ESCA | chr20_44225943_+ | 2.601200e+00 | 1.445557e+00 | 1.179868e+00 | 4.047179e+00 | 5.183863e-05 | 6.723624e-05 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000223891 | LncEditing_366762 | -3.008113e-01 | 7.065323e-03 | 9.122065e-03 | | ENSG00000223891 | LncEditing_366762 | -5.905343e-01 | 7.766242e-03 | 1.755515e-02 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000223891 | ENSG00000148300 | REXO4 | ENSG00000180035 | ZNF48 | 5 | CHOL,KIRP,LGG,PAAD,THCA | | ENSG00000223891 | ENSG00000167967 | E4F1 | ENSG00000180035 | ZNF48 | 5 | CHOL,KIRP,LGG,MESO,SARC | | ENSG00000223891 | ENSG00000125817 | CENPB | ENSG00000189306 | RRP7A | 6 | CESC,CHOL,LIHC,MESO,THCA,THYM | | ENSG00000223891 | ENSG00000196378 | ZNF34 | ENSG00000099326 | MZF1 | 5 | CHOL,HNSC,PAAD,PCPG,THCA | | ENSG00000223891 | ENSG00000148300 | REXO4 | ENSG00000130811 | EIF3G | 8 | CHOL,KIRP,LGG,LIHC,PAAD,PCPG,PRAD,THCA | | ENSG00000223891 | ENSG00000167967 | E4F1 | ENSG00000130811 | EIF3G | 5 | CHOL,KIRP,LGG,MESO,PRAD | | ENSG00000223891 | ENSG00000180035 | ZNF48 | ENSG00000130811 | EIF3G | 6 | CHOL,DLBC,KIRP,LGG,PAAD,THCA | | ENSG00000223891 | ENSG00000125817 | CENPB | ENSG00000204392 | LSM2 | 7 | CESC,CHOL,LIHC,MESO,PCPG,PRAD,THCA | | ENSG00000223891 | ENSG00000148300 | REXO4 | ENSG00000204392 | LSM2 | 7 | CHOL,KIRP,LGG,LIHC,PCPG,PRAD,THCA | | ENSG00000223891 | ENSG00000167967 | E4F1 | ENSG00000204392 | LSM2 | 6 | CHOL,LGG,LIHC,MESO,PCPG,PRAD | | ENSG00000223891 | ENSG00000180035 | ZNF48 | ENSG00000204392 | LSM2 | 6 | CHOL,DLBC,HNSC,LAML,LGG,THCA | | ENSG00000223891 | ENSG00000148300 | REXO4 | ENSG00000125817 | CENPB | 5 | CHOL,KIRP,LIHC,PCPG,THCA | | ENSG00000223891 | ENSG00000148300 | REXO4 | ENSG00000167967 | E4F1 | 6 | CHOL,KIRP,LGG,LIHC,PRAD,THCA | | ENSG00000223891 | ENSG00000180035 | ZNF48 | ENSG00000167967 | E4F1 | 5 | CHOL,KIRP,LGG,MESO,SARC | | ENSG00000223891 | ENSG00000196378 | ZNF34 | ENSG00000167967 | E4F1 | 5 | CHOL,KIRP,LGG,PCPG,THCA | | ENSG00000223891 | ENSG00000125817 | CENPB | ENSG00000105671 | DDX49 | 5 | CHOL,KIRP,MESO,PRAD,THCA | | ENSG00000223891 | ENSG00000148300 | REXO4 | ENSG00000105671 | DDX49 | 6 | CHOL,KIRP,LGG,PAAD,PRAD,THCA | | ENSG00000223891 | ENSG00000167967 | E4F1 | ENSG00000105671 | DDX49 | 5 | CHOL,KIRP,LGG,MESO,PRAD | | ENSG00000223891 | ENSG00000180035 | ZNF48 | ENSG00000105671 | DDX49 | 6 | CHOL,HNSC,KIRP,LGG,PAAD,THCA | | ENSG00000223891 | ENSG00000180035 | ZNF48 | ENSG00000100105 | PATZ1 | 7 | CESC,CHOL,HNSC,LAML,LGG,PAAD,THCA | | ENSG00000223891 | ENSG00000196378 | ZNF34 | ENSG00000100105 | PATZ1 | 6 | CESC,CHOL,HNSC,LGG,PAAD,THCA | | ENSG00000223891 | ENSG00000180035 | ZNF48 | ENSG00000166526 | ZNF3 | 5 | ACC,CHOL,HNSC,KIRP,THCA | | ENSG00000223891 | ENSG00000125817 | CENPB | ENSG00000126254 | RBM42 | 9 | CESC,CHOL,KIRP,LIHC,MESO,PCPG,PRAD,THCA,THYM | | ENSG00000223891 | ENSG00000148300 | REXO4 | ENSG00000126254 | RBM42 | 6 | CHOL,KIRP,LIHC,PCPG,PRAD,THCA | | ENSG00000223891 | ENSG00000167967 | E4F1 | ENSG00000126254 | RBM42 | 6 | CHOL,KIRP,LIHC,MESO,PCPG,PRAD | | ENSG00000223891 | ENSG00000180035 | ZNF48 | ENSG00000126254 | RBM42 | 5 | CHOL,DLBC,KIRP,TGCT,THCA | | ENSG00000223891 | ENSG00000125817 | CENPB | ENSG00000041988 | THAP3 | 10 | CESC,CHOL,DLBC,KIRP,LIHC,MESO,PCPG,PRAD,THCA,THYM | | ENSG00000223891 | ENSG00000148300 | REXO4 | ENSG00000041988 | THAP3 | 8 | CHOL,KIRP,LGG,LIHC,PAAD,PCPG,PRAD,THCA | | ENSG00000223891 | ENSG00000167967 | E4F1 | ENSG00000041988 | THAP3 | 7 | CHOL,KIRP,LGG,LIHC,MESO,PCPG,PRAD | | ENSG00000223891 | ENSG00000180035 | ZNF48 | ENSG00000041988 | THAP3 | 7 | CHOL,DLBC,HNSC,LGG,MESO,PAAD,THCA | | ENSG00000223891 | ENSG00000196378 | ZNF34 | ENSG00000041988 | THAP3 | 5 | CHOL,KICH,KIRP,LGG,THCA | | ENSG00000223891 | ENSG00000180035 | ZNF48 | ENSG00000099622 | CIRBP | 5 | CHOL,DLBC,HNSC,LAML,PAAD |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000223891 | OSER1-DT,hsa-mir-22,RXRB | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,ATAT1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,TADA2A | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,NRF1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,RING1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,EHMT2 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,PHC1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,HEXIM2 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,VEZF1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,PAXBP1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,CNNM3 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,HEXD | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,MBTD1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,KPNA5 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,SBK1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,RBMX | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,C14orf93 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,MKS1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,PCIF1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,DET1 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,ING4 | KICH,CESC,CHOL,LGG,KIRP | | ENSG00000223891 | OSER1-DT,hsa-mir-22,NSMCE4A | KICH,CESC,CHOL,LGG,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000223891.4 | ENST00000439943.4 | 77 | 271 | 38 | | ENSG00000223891.4 | ENST00000437730.4 | 95 | 288 | 1 | | ENSG00000223891.4 | ENST00000442383.1 | 85 | 542 | 799 | | ENSG00000223891.4 | ENST00000435163.3 | 85 | 461 | 718 | | ENSG00000223891.4 | ENST00000623343.1 | 45 | 584 | 447 |
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