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lncRNA: ENSG00000223478 |
Summary for RP11-545E17.3 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000223478 | Gene symbol | RP11-545E17.3 |
| Gene name | ||
| HGNC | ||
| Entrez ID | 100506100 | |
| Gene type | antisense | |
| Synonyms | ||
| UniProtAcc |
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Structure and expression level for RP11-545E17.3 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000223478 | 1.047207e+02 | 1.009427e+00 | 2.183607e-01 | 4.622750e+00 | 3.790000e-06 | 2.920000e-05 | UP | BLCA |
| ENSG00000223478 | 2.215386e+02 | 2.035064e+00 | 4.932517e-01 | 4.125811e+00 | 3.690000e-05 | 5.317700e-04 | UP | CESC |
| ENSG00000223478 | 1.442380e+02 | 1.007593e+00 | 1.379455e-01 | 7.304283e+00 | 2.790000e-13 | 2.960000e-12 | UP | HNSC |
| ENSG00000223478 | 8.043408e+01 | 1.023465e+00 | 1.473331e-01 | 6.946605e+00 | 3.740000e-12 | 2.980000e-11 | UP | LIHC |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000223478 | -4.351781e-01 | 2.027457e-05 | KICH | 4.095565e-05 |
| ENSG00000223478 | 3.104163e-01 | 2.204923e-10 | LIHC | 7.553902e-10 |
| ENSG00000223478 | 3.053718e-01 | 3.701161e-04 | TGCT | 9.314587e-03 |
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lncRNA-Protein interaction for RP11-545E17.3 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000223478 | ENST00000443631 | RP11-545E17.3 | ENSG00000067334 | DNTTIP2 | 48.64 | 92.2019 | Q5QJE6 | Epi | NA |
| ENSG00000223478 | ENST00000443631 | RP11-545E17.3 | ENSG00000115241 | PPM1G | 11.08 | 92.1261 | O15355 | Epi | NA |
| ENSG00000223478 | ENST00000443631 | RP11-545E17.3 | ENSG00000149929 | HIRIP3 | 8.11 | 91.0837 | Q9BW71 | Epi | NA |
| ENSG00000223478 | ENST00000443631 | RP11-545E17.3 | ENSG00000154832 | CXXC1 | 35.39 | 91.2938 | Q9P0U4 | TF,Epi | NA |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000223478 | ENST00000443631 | RP11-545E17.3 | ENSG00000154832 | CXXC1 | 35.39 | 90.2727 | Q9P0U4 | TF,Epi | NA |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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