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lncRNA: ENSG00000222041

Summary for CYTOR

Gene summary

Gene information	Ensembl ID	ENSG00000222041
	Gene symbol	CYTOR
	Gene name	cytoskeleton regulator RNA
	HGNC	28717
	Entrez ID	112597
	Gene type	lincRNA
	Synonyms	CYTOR\|LINC00152\|02p11.2
	UniProtAcc

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Structure and expression level for CYTOR

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000222041	9.687556e+02	2.001677e+00	5.010070e-01	3.995306e+00	6.460000e-05	3.380650e-04	UP	GBM
ENSG00000222041	7.455314e+02	2.535849e+00	2.703017e-01	9.381548e+00	6.500000e-21	3.620000e-19	UP	CHOL
ENSG00000222041	9.738070e+02	1.834304e+00	1.193299e-01	1.537171e+01	2.530000e-53	6.980000e-52	UP	KIRC
ENSG00000222041	3.851029e+02	-1.284197e+00	2.891547e-01	-4.441211e+00	8.950000e-06	3.010000e-05	DOWN	KICH
ENSG00000222041	7.830193e+02	1.138581e+00	3.430155e-01	3.319327e+00	9.023470e-04	3.506765e-03	UP	BLCA
ENSG00000222041	4.679393e+02	1.071061e+00	1.767980e-01	6.058109e+00	1.380000e-09	9.400000e-09	UP	KIRP
ENSG00000222041	3.476106e+02	1.448993e+00	1.858090e-01	7.798295e+00	6.270000e-15	6.560000e-14	UP	UCEC
ENSG00000222041	8.172171e+02	2.188620e+00	2.503891e-01	8.740876e+00	2.310000e-18	1.420000e-15	UP	ESCA
ENSG00000222041	9.131368e+02	1.103220e+00	8.910252e-02	1.238146e+01	3.290000e-35	4.120000e-34	UP	BRCA
ENSG00000222041	6.644536e+02	1.268420e+00	1.280254e-01	9.907566e+00	3.860000e-23	4.910000e-22	UP	LUAD
ENSG00000222041	2.880940e+02	1.354923e+00	1.301450e-01	1.041088e+01	2.210000e-25	4.350000e-24	UP	COAD
ENSG00000222041	6.133783e+02	1.981275e+00	1.884265e-01	1.051484e+01	7.380000e-26	2.460000e-24	UP	LIHC
ENSG00000222041	2.901852e+02	1.591674e+00	2.702624e-01	5.889368e+00	3.880000e-09	8.760000e-08	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000222041	3.757256e-01	7.589935e-04	ACC	5.686976e-03
ENSG00000222041	4.413833e-01	2.404533e-03	CHOL	3.523018e-03
ENSG00000222041	-4.335213e-01	2.197660e-05	KICH	4.395319e-05
ENSG00000222041	4.275923e-01	2.023866e-28	KIRC	5.875741e-27
ENSG00000222041	3.205913e-01	2.102382e-08	KIRP	1.690205e-07
ENSG00000222041	3.788050e-01	4.270521e-15	LIHC	5.371659e-14

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lncRNA-Protein interaction for CYTOR

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000222041	ENST00000414584	LINC00152	ENSG00000106624	AEBP1	41.31	90.1398	Q8IUX7	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000222041	ENST00000612724	LINC00152	ENSG00000136271	DDX56	8.74	90.5878	Q9NY93	RBP	NA
ENSG00000222041	ENST00000414584	LINC00152	ENSG00000136271	DDX56	6.73	91.1488	Q9NY93	RBP	NA
ENSG00000222041	ENST00000413202	LINC00152	ENSG00000106263	EIF3B	49.84	90.5913	P55884	RBP	NA

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lncRNA-DNA interaction for CYTOR

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

SLIRP,ISG20,IRF3,BATF3,JMJD6,DDX56,IMP3,PHF19,CENPB,SNAI2,SNRPA,IRF1,LSM3,FOSL1,SPI1,LSM5,PNO1,EIF3G,TEAD4,PA2G4,PUF60,LSM4,CREB3,CWC15,CPSF4,PPIE,MBD2,SF3B6,NELFE,IRF7,USF1,THYN1,DDX49,HLX,THOC6,RBM42,KLF16,ILF2,CENPA,ATF4,REXO4,MBD3,THAP3,EIF3B,ATF3,CREM,TGIF1,CPSF3,NOP2,NR1H3,LSM2,PIN1,THOC5,RBM8A,RRP7A,SMYD3,DDX41,THOC7,RALY

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

RRP7A,EIF3G,LSM2,CENPB,PHF19,JMJD6,RBM42,PRRX2,THAP3,FOXS1,CENPA,TGIF1

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

Only predicted by TDF

UBR5,RBM5,GTF2I,SMAD1,SF3A1,REST,ADNP,TET2,ZFP3,AGO4,STAU1,AKAP1

Exist in public source

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lncRNA-RNA interaction for CYTOR

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

UBR5,SON,NFAT5,GTF2I,REST,HBP1,KDM2B,SP4,ZFX,MXI1,CPEB4,ASH1L,SATB1,TCF20,RNPC3,DZIP3,CASZ1,HSF2,RREB1,FOXN3,ZNF10,STAT6,IREB2,CUX1,PUM2,RC3H1,ZHX3,RBM23,SCAF4,BAZ2B,NCOA2,PBX1,KMT2B,DDX3X,GLYR1,PUM1,ZHX1,ZNF91,NR2C2,THAP6,SYNJ1,NCOA1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000222041	ENST00000423846	exon_skip_17679	chr1:211312719-211312961	-20.16	-0.1126	RCOR3	ENST00000367005	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_361434	chr21:25997359-25997416	-9.85	-0.2402	APP	ENST00000346798	In-frame
ENSG00000222041	ENST00000612724	exon_skip_490001	chr8:61643944-61644001	-7.99	-0.1480	ASPH	ENST00000379454	In-frame
ENSG00000222041	ENST00000612724	exon_skip_376144	chr3:100311832-100311877	-14.18	-0.7090	TBC1D23	ENST00000394144	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000222041	ENST00000414030	exon_skip_6457	chr1:52083339-52083541	-12.00	-0.1319	BTF3L4	ENST00000313334	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_30682	chr1:151310210-151310255	-6.90	-0.2226	PI4KB	ENST00000368873	In-frame
ENSG00000222041	ENST00000612724	exon_skip_60345	chr11:63903985-63904147	-18.44	-0.1418	MARK2	ENST00000402010	In-frame
ENSG00000222041	ENST00000612724	exon_skip_67681	chr11:893426-893519	-15.59	-0.2475	CHID1	ENST00000323578,ENST00000436108,ENST00000449825	In-frame
ENSG00000222041	ENST00000612724	exon_skip_83395	chr12:53464759-53464852	-11.74	-0.1365	PCBP2	ENST00000439930	In-frame
ENSG00000222041	ENST00000612724	exon_skip_89597	chr12:6672349-6672532	-22.69	-0.1445	ZNF384	ENST00000361959,ENST00000396801	In-frame
ENSG00000222041	ENST00000612724	exon_skip_110809	chr14:105449358-105449409	-11.71	-0.2296	MTA1	ENST00000331320	In-frame
ENSG00000222041	ENST00000612724	exon_skip_111672	chr14:23089981-23090101	-14.68	-0.2224	ACIN1	ENST00000262710	In-frame
ENSG00000222041	ENST00000612724	exon_skip_140339	chr16:635611-635774	-18.26	-0.1497	METTL26	ENST00000301686	Frame-shift
ENSG00000222041	ENST00000409898	exon_skip_143728	chr16:29993905-29994843	-24.34	-0.1199	HIRIP3	ENST00000279392	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_150854	chr17:32366664-32366757	-10.13	-0.1535	ZNF207	ENST00000321233	In-frame
ENSG00000222041	ENST00000612724	exon_skip_291980	chr17:59119318-59119495	-13.32	-0.1464	SKA2	ENST00000330137	In-frame
ENSG00000222041	ENST00000612724	exon_skip_319500	chr19:45413962-45414034	-11.26	-0.1632	ERCC1	ENST00000300853,ENST00000589165	In-frame
ENSG00000222041	ENST00000612724	exon_skip_321184	chr19:50507573-50507699	-18.79	-0.1917	JOSD2	ENST00000598418,ENST00000601423	In-frame
ENSG00000222041	ENST00000612724	exon_skip_322579	chr19:55455635-55455845	-25.38	-0.1395	ISOC2	ENST00000425675	In-frame
ENSG00000222041	ENST00000612724	exon_skip_379903	chr3:184180644-184180650	-1.37	-0.3425	AP2M1	ENST00000292807	In-frame
ENSG00000222041	ENST00000612724	exon_skip_382439	chr3:38126161-38126341	-18.80	-0.1288	ACAA1	ENST00000333167	In-frame
ENSG00000222041	ENST00000612724	exon_skip_390412	chr3:183833723-183833825	-10.92	-0.1149	PARL	ENST00000317096	In-frame
ENSG00000222041	ENST00000612724	exon_skip_430112	chr4:75653982-75654081	-9.69	-0.1327	G3BP2	ENST00000359707,ENST00000395719	In-frame
ENSG00000222041	ENST00000612724	exon_skip_478176	chr7:100435630-100435767	-17.81	-0.1360	PPP1R35	ENST00000292330	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_482403	chr8:27445793-27445919	-11.27	-0.1044	PTK2B	ENST00000346049,ENST00000397501	In-frame
ENSG00000222041	ENST00000612724	exon_skip_484062	chr8:73030335-73030395	-10.46	-0.2274	TERF1	ENST00000276603	In-frame
ENSG00000222041	ENST00000612724	exon_skip_40119	chr10:24494499-24494604	-11.86	-0.1348	KIAA1217	ENST00000376454	In-frame
ENSG00000222041	ENST00000612724	exon_skip_11029	chr1:154989559-154989707	-17.19	-0.1169	FLAD1	ENST00000292180	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_26948	chr1:52897436-52897484	-7.28	-0.3832	ECHDC2	ENST00000371522	In-frame
ENSG00000222041	ENST00000612724	exon_skip_59476	chr11:57815914-57816001	-12.52	-0.1546	CTNND1	ENST00000399050	In-frame
ENSG00000222041	ENST00000612724	exon_skip_85538	chr12:71894324-71894375	-9.97	-0.2167	TBC1D15	ENST00000550746	In-frame
ENSG00000222041	ENST00000612724	exon_skip_146683	chr16:85780378-85780473	-11.64	-0.1512	EMC8	ENST00000253457	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_299306	chr18:50274185-50274353	-14.04	-0.1433	MBD1	ENST00000269468,ENST00000382948,ENST00000591416	In-frame
ENSG00000222041	ENST00000612724	exon_skip_331103	chr2:171712766-171712826	-10.58	-0.2075	DYNC1I2	ENST00000397119,ENST00000409773	In-frame
ENSG00000222041	ENST00000612724	exon_skip_363747	chr22:23877720-23877869	-16.08	-0.1165	SLC2A11	ENST00000345044	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_423795	chr4:55888887-55888932	-10.65	-0.2477	EXOC1	ENST00000346134,ENST00000381295	In-frame
ENSG00000222041	ENST00000603948	exon_skip_430434	chr4:82356536-82356683	-12.60	-0.1033	HNRNPD	ENST00000313899	In-frame
ENSG00000222041	ENST00000612724	exon_skip_461111	chr6:90544551-90544632	-15.80	-0.2772	MAP3K7	ENST00000369329	In-frame
ENSG00000222041	ENST00000612724	exon_skip_44853	chr10:104010815-104010908	-10.45	-0.1900	SLK	ENST00000369755	In-frame
ENSG00000222041	ENST00000455131	exon_skip_380574	chr3:191375061-191375589	-30.88	-0.1084	CCDC50	ENST00000392456	In-frame
ENSG00000222041	ENST00000423846	exon_skip_435063	chr5:66075023-66075230	-19.05	-0.1141	ERBIN	ENST00000284037	In-frame
ENSG00000222041	ENST00000603948	exon_skip_5818	chr1:45568484-45568684	-20.88	-0.1383	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift
ENSG00000222041	ENST00000603948	exon_skip_78771	chr11:134248808-134248959	-15.38	-0.1250	THYN1	ENST00000341541,ENST00000392594,ENST00000392595	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_83407	chr12:53465931-53465973	-8.14	-0.3015	PCBP2	ENST00000439930	In-frame
ENSG00000222041	ENST00000612724	exon_skip_83512	chr12:53505134-53505262	-13.21	-0.1212	TARBP2	ENST00000266987	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_390418	chr3:183842297-183842447	-9.82	-0.1444	PARL	ENST00000317096	In-frame
ENSG00000222041	ENST00000612724	exon_skip_4279	chr1:36174897-36175008	-13.13	-0.1354	MAP7D1	ENST00000373151	In-frame
ENSG00000222041	ENST00000413202	exon_skip_11532	chr1:155137560-155137722	-15.35	-0.1044	SLC50A1	ENST00000368404	In-frame
ENSG00000222041	ENST00000612724	exon_skip_87385	chr12:113284717-113284771	-8.27	-0.1590	TPCN1	ENST00000335509	In-frame
ENSG00000222041	ENST00000612724	exon_skip_140277	chr16:635280-635340	-12.63	-0.2141	METTL26	ENST00000301686	In-frame
ENSG00000222041	ENST00000603948	exon_skip_283774	chr17:78171509-78171649	-17.41	-0.1262	SYNGR2	ENST00000225777,ENST00000585591	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_320509	chr19:48839204-48839263	-9.09	-0.2525	PLEKHA4	ENST00000263265	Frame-shift
ENSG00000222041	ENST00000612724	exon_skip_508362	chr9:136676584-136676680	-14.16	-0.2023	AGPAT2	ENST00000371696,ENST00000538402	In-frame
ENSG00000222041	ENST00000603948	exon_skip_445390	chr5:150403120-150403312	-22.14	-0.1258	CD74	ENST00000009530	In-frame
ENSG00000222041	ENST00000612724	exon_skip_83404	chr12:53465931-53465973	-8.14	-0.3015	PCBP2	ENST00000439930	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000222041	hsa-mir-328	ENST00000409054	chr2:87455369-87455435	151.00	-74.68	61	NA
ENSG00000222041	hsa-mir-328	ENST00000409054	chr2:87455559-87455644	151.00	-81.23	82	NA
ENSG00000222041	hsa-mir-328	ENST00000409054	chr2:87455838-87455919	150.00	-73.50	79	NA
ENSG00000222041	hsa-mir-328	ENST00000409054	chr2:87455685-87455763	147.00	-64.80	40	NA
ENSG00000222041	hsa-mir-328	ENST00000409054	chr2:87456231-87456313	147.00	-87.30	79	NA
ENSG00000222041	hsa-mir-328	ENST00000409054	chr2:87455761-87455835	143.00	-78.28	68	NA
ENSG00000222041	hsa-mir-328	ENST00000409054	chr2:87455499-87455563	142.00	-67.16	72	NA
ENSG00000222041	hsa-mir-328	ENST00000331944	chr2:87455742-87455813	158.00	-72.89	68	NA
ENSG00000222041	hsa-mir-328	ENST00000331944	chr2:87455809-87455893	154.00	-82.93	81	NA
ENSG00000222041	hsa-mir-328	ENST00000331944	chr2:87455559-87455644	151.00	-81.23	82	NA
ENSG00000222041	hsa-mir-328	ENST00000331944	chr2:87455639-87455731	143.00	-73.99	76	NA
ENSG00000222041	hsa-mir-328	ENST00000331944	chr2:87455499-87455563	142.00	-67.16	72	NA
ENSG00000222041	hsa-mir-328	ENST00000409139	chr2:87455559-87455644	151.00	-81.23	82	NA
ENSG00000222041	hsa-mir-328	ENST00000409139	chr2:87455722-87455797	149.00	-69.25	69	NA
ENSG00000222041	hsa-mir-328	ENST00000409139	chr2:87455499-87455563	142.00	-67.16	72	NA
ENSG00000222041	hsa-mir-328	ENST00000409898	chr2:87455836-87455910	173.00	-81.49	75	NA
ENSG00000222041	hsa-mir-328	ENST00000409898	chr2:87455559-87455644	151.00	-81.23	82	NA
ENSG00000222041	hsa-mir-328	ENST00000409898	chr2:87455499-87455563	142.00	-67.16	72	NA
ENSG00000222041	hsa-mir-328	ENST00000419680	chr2:87456043-87456114	158.00	-72.89	68	NA
ENSG00000222041	hsa-mir-328	ENST00000419680	chr2:87455665-87455739	154.00	-75.84	72	NA
ENSG00000222041	hsa-mir-328	ENST00000419680	chr2:87455559-87455644	151.00	-81.23	82	NA
ENSG00000222041	hsa-mir-328	ENST00000419680	chr2:87455942-87456032	148.00	-72.61	89	NA
ENSG00000222041	hsa-mir-328	ENST00000419680	chr2:87455499-87455563	142.00	-67.16	72	NA
ENSG00000222041	hsa-mir-328	ENST00000414584	chr2:87455662-87455738	183.00	-75.86	70	NA
ENSG00000222041	hsa-mir-328	ENST00000414584	chr2:87456052-87456123	158.00	-72.89	68	NA
ENSG00000222041	hsa-mir-328	ENST00000414584	chr2:87456119-87456203	154.00	-82.93	81	NA
ENSG00000222041	hsa-mir-328	ENST00000414584	chr2:87455559-87455644	151.00	-81.23	82	NA
ENSG00000222041	hsa-mir-328	ENST00000414584	chr2:87455949-87456041	143.00	-71.91	76	NA
ENSG00000222041	hsa-mir-328	ENST00000414584	chr2:87455499-87455563	142.00	-67.16	72	NA
ENSG00000222041	hsa-mir-328	ENST00000414584	chr2:87455748-87455823	141.00	-67.56	62	NA
ENSG00000222041	hsa-mir-328	ENST00000455131	chr2:87455882-87455962	178.00	-61.93	62	NA
ENSG00000222041	hsa-mir-328	ENST00000455131	chr2:87456127-87456198	158.00	-72.89	68	NA
ENSG00000222041	hsa-mir-328	ENST00000455131	chr2:87455610-87455687	154.00	-83.57	72	NA
ENSG00000222041	hsa-mir-328	ENST00000455131	chr2:87456024-87456116	143.00	-71.87	76	NA
ENSG00000222041	hsa-mir-328	ENST00000423846	chr2:87455888-87455959	158.00	-72.89	68	NA
ENSG00000222041	hsa-mir-328	ENST00000423846	chr2:87455559-87455644	151.00	-81.23	82	NA
ENSG00000222041	hsa-mir-328	ENST00000423846	chr2:87455787-87455877	148.00	-72.61	89	NA
ENSG00000222041	hsa-mir-328	ENST00000414030	chr2:87470434-87470514	178.00	-61.93	62	NA
ENSG00000222041	hsa-mir-328	ENST00000414030	chr2:87469994-87470063	163.00	-74.28	67	NA
ENSG00000222041	hsa-mir-328	ENST00000414030	chr2:87470062-87470136	154.00	-75.84	72	NA
ENSG00000222041	hsa-mir-328	ENST00000414030	chr2:87470544-87470627	148.00	-80.50	77	NA
ENSG00000222041	hsa-mir-328	ENST00000414030	chr2:87470193-87470266	147.00	-68.99	72	NA
ENSG00000222041	hsa-mir-328	ENST00000437561	chr2:87469994-87470063	163.00	-74.28	67	NA
ENSG00000222041	hsa-mir-328	ENST00000437561	chr2:87470294-87470365	158.00	-72.89	68	NA
ENSG00000222041	hsa-mir-328	ENST00000437561	chr2:87470062-87470136	154.00	-75.84	72	NA
ENSG00000222041	hsa-mir-328	ENST00000437561	chr2:87470189-87470283	147.00	-70.95	87	NA
ENSG00000222041	hsa-mir-328	ENST00000629257	chr2:87470133-87470211	147.00	-64.80	40	NA
ENSG00000222041	hsa-mir-328	ENST00000629257	chr2:87470024-87470100	142.00	-73.81	58	NA
ENSG00000222041	hsa-mir-328	ENST00000413202	chr2:87509424-87509495	158.00	-72.89	68	NA
ENSG00000222041	hsa-mir-328	ENST00000413202	chr2:87509491-87509575	154.00	-82.93	81	NA
ENSG00000222041	hsa-mir-328	ENST00000413202	chr2:87509318-87509413	152.00	-73.28	90	NA
ENSG00000222041	hsa-mir-328	ENST00000603948	chr2:87581286-87581364	147.00	-64.80	40	NA
ENSG00000222041	hsa-mir-328	ENST00000603948	chr2:87581362-87581436	143.00	-78.28	68	NA
ENSG00000222041	hsa-mir-328	ENST00000612724	chr2:87581990-87582068	147.00	-64.80	40	NA
ENSG00000222041	hsa-mir-328	ENST00000612724	chr2:87581852-87581926	145.00	-67.66	75	NA
ENSG00000222041	hsa-mir-328	ENST00000612724	chr2:87582066-87582140	143.00	-78.28	68	NA
ENSG00000222041	hsa-mir-30e	ENST00000409054	chr2:87456049-87456145	206.00	-83.64	92	NA
ENSG00000222041	hsa-mir-30e	ENST00000409054	chr2:87455575-87455676	200.00	-92.09	98	NA
ENSG00000222041	hsa-mir-30e	ENST00000409054	chr2:87456358-87456462	184.00	-106.30	108	NA
ENSG00000222041	hsa-mir-30e	ENST00000409054	chr2:87455837-87455923	175.00	-77.99	81	NA
ENSG00000222041	hsa-mir-30e	ENST00000409054	chr2:87455706-87455810	169.00	-85.63	103	NA
ENSG00000222041	hsa-mir-30e	ENST00000409054	chr2:87455496-87455581	166.00	-74.64	74	NA
ENSG00000222041	hsa-mir-30e	ENST00000409054	chr2:87456162-87456254	156.00	-75.12	93	NA
ENSG00000222041	hsa-mir-30e	ENST00000409054	chr2:87455411-87455510	152.00	-90.33	95	NA
ENSG00000222041	hsa-mir-30e	ENST00000409054	chr2:87455973-87456061	142.00	-76.34	85	NA
ENSG00000222041	hsa-mir-30e	ENST00000331944	chr2:87455760-87455849	201.00	-94.24	90	NA
ENSG00000222041	hsa-mir-30e	ENST00000331944	chr2:87455500-87455593	180.00	-85.72	82	NA
ENSG00000222041	hsa-mir-30e	ENST00000331944	chr2:87455631-87455725	158.00	-74.00	98	NA
ENSG00000222041	hsa-mir-30e	ENST00000331944	chr2:87455430-87455510	144.00	-81.49	73	NA
ENSG00000222041	hsa-mir-30e	ENST00000409139	chr2:87455575-87455676	200.00	-92.09	98	NA
ENSG00000222041	hsa-mir-30e	ENST00000409139	chr2:87455496-87455581	166.00	-74.64	74	NA
ENSG00000222041	hsa-mir-30e	ENST00000409139	chr2:87455805-87455899	166.00	-77.55	86	NA
ENSG00000222041	hsa-mir-30e	ENST00000409139	chr2:87455706-87455790	156.00	-74.14	92	NA
ENSG00000222041	hsa-mir-30e	ENST00000409139	chr2:87455430-87455510	144.00	-81.49	73	NA
ENSG00000222041	hsa-mir-30e	ENST00000409898	chr2:87455575-87455676	200.00	-92.09	98	NA
ENSG00000222041	hsa-mir-30e	ENST00000409898	chr2:87455856-87455944	167.00	-81.10	91	NA
ENSG00000222041	hsa-mir-30e	ENST00000409898	chr2:87455496-87455581	166.00	-74.64	74	NA
ENSG00000222041	hsa-mir-30e	ENST00000409898	chr2:87455936-87456014	164.00	-72.51	89	NA
ENSG00000222041	hsa-mir-30e	ENST00000409898	chr2:87455671-87455762	141.00	-78.16	93	NA
ENSG00000222041	hsa-mir-30e	ENST00000419680	chr2:87456061-87456150	201.00	-94.24	90	NA
ENSG00000222041	hsa-mir-30e	ENST00000419680	chr2:87455500-87455593	180.00	-85.72	82	NA
ENSG00000222041	hsa-mir-30e	ENST00000419680	chr2:87455602-87455691	179.00	-87.23	87	NA
ENSG00000222041	hsa-mir-30e	ENST00000419680	chr2:87455864-87455958	155.00	-93.76	92	NA
ENSG00000222041	hsa-mir-30e	ENST00000419680	chr2:87455940-87456026	148.00	-70.46	81	NA
ENSG00000222041	hsa-mir-30e	ENST00000419680	chr2:87455737-87455824	143.00	-78.85	89	NA
ENSG00000222041	hsa-mir-30e	ENST00000414584	chr2:87456070-87456159	201.00	-94.24	90	NA
ENSG00000222041	hsa-mir-30e	ENST00000414584	chr2:87455500-87455593	180.00	-85.72	82	NA
ENSG00000222041	hsa-mir-30e	ENST00000414584	chr2:87455837-87455922	172.00	-76.05	89	NA
ENSG00000222041	hsa-mir-30e	ENST00000414584	chr2:87455649-87455736	164.00	-91.65	93	NA
ENSG00000222041	hsa-mir-30e	ENST00000414584	chr2:87455914-87456014	151.00	-75.80	100	NA
ENSG00000222041	hsa-mir-30e	ENST00000414584	chr2:87455993-87456074	143.00	-73.20	74	NA
ENSG00000222041	hsa-mir-30e	ENST00000455131	chr2:87456145-87456234	201.00	-94.24	90	NA
ENSG00000222041	hsa-mir-30e	ENST00000455131	chr2:87455506-87455593	180.00	-82.41	82	NA
ENSG00000222041	hsa-mir-30e	ENST00000455131	chr2:87455823-87455917	173.00	-73.19	95	NA
ENSG00000222041	hsa-mir-30e	ENST00000455131	chr2:87455728-87455813	172.00	-76.05	89	NA
ENSG00000222041	hsa-mir-30e	ENST00000455131	chr2:87455983-87456089	164.00	-83.34	100	NA
ENSG00000222041	hsa-mir-30e	ENST00000455131	chr2:87456068-87456149	143.00	-73.20	74	NA
ENSG00000222041	hsa-mir-30e	ENST00000423846	chr2:87455906-87455995	201.00	-94.24	90	NA
ENSG00000222041	hsa-mir-30e	ENST00000423846	chr2:87455631-87455723	164.00	-86.23	89	NA
ENSG00000222041	hsa-mir-30e	ENST00000423846	chr2:87455785-87455871	148.00	-70.46	81	NA
ENSG00000222041	hsa-mir-30e	ENST00000423846	chr2:87455543-87455593	141.00	-71.32	54	NA
ENSG00000222041	hsa-mir-30e	ENST00000414030	chr2:87469997-87470088	176.00	-88.13	83	NA
ENSG00000222041	hsa-mir-30e	ENST00000414030	chr2:87470375-87470469	173.00	-73.19	95	NA
ENSG00000222041	hsa-mir-30e	ENST00000414030	chr2:87470280-87470365	172.00	-76.05	89	NA
ENSG00000222041	hsa-mir-30e	ENST00000414030	chr2:87470505-87470601	158.00	-86.24	96	NA
ENSG00000222041	hsa-mir-30e	ENST00000414030	chr2:87469951-87469983	150.00	-63.96	31	NA
ENSG00000222041	hsa-mir-30e	ENST00000414030	chr2:87470108-87470205	146.00	-86.81	93	NA
ENSG00000222041	hsa-mir-30e	ENST00000437561	chr2:87470312-87470401	201.00	-94.24	90	NA
ENSG00000222041	hsa-mir-30e	ENST00000437561	chr2:87469997-87470088	176.00	-88.13	83	NA
ENSG00000222041	hsa-mir-30e	ENST00000437561	chr2:87470108-87470209	155.00	-88.27	97	NA
ENSG00000222041	hsa-mir-30e	ENST00000437561	chr2:87469951-87469983	150.00	-63.96	31	NA
ENSG00000222041	hsa-mir-30e	ENST00000437561	chr2:87470191-87470277	148.00	-70.46	81	NA
ENSG00000222041	hsa-mir-30e	ENST00000629257	chr2:87470042-87470124	219.00	-91.47	90	NA
ENSG00000222041	hsa-mir-30e	ENST00000629257	chr2:87470154-87470258	169.00	-85.63	103	NA
ENSG00000222041	hsa-mir-30e	ENST00000629257	chr2:87469951-87469983	150.00	-63.96	31	NA
ENSG00000222041	hsa-mir-30e	ENST00000413202	chr2:87509442-87509531	201.00	-94.24	90	NA
ENSG00000222041	hsa-mir-30e	ENST00000413202	chr2:87509248-87509339	179.00	-81.30	89	NA
ENSG00000222041	hsa-mir-30e	ENST00000413202	chr2:87509321-87509407	148.00	-71.43	81	NA
ENSG00000222041	hsa-mir-30e	ENST00000603948	chr2:87581185-87581277	195.00	-89.96	83	NA
ENSG00000222041	hsa-mir-30e	ENST00000603948	chr2:87581003-87581109	188.00	-96.49	104	NA
ENSG00000222041	hsa-mir-30e	ENST00000603948	chr2:87581307-87581411	169.00	-85.63	103	NA
ENSG00000222041	hsa-mir-30e	ENST00000612724	chr2:87581833-87581921	194.00	-81.17	90	NA
ENSG00000222041	hsa-mir-30e	ENST00000612724	chr2:87581676-87581773	175.00	-75.20	97	NA
ENSG00000222041	hsa-mir-30e	ENST00000612724	chr2:87582011-87582115	169.00	-85.63	103	NA
ENSG00000222041	hsa-mir-30e	ENST00000612724	chr2:87581922-87582016	154.00	-80.28	79	NA
ENSG00000222041	hsa-mir-192	ENST00000409054	chr2:87456166-87456273	193.00	-85.86	99	NA
ENSG00000222041	hsa-mir-192	ENST00000409054	chr2:87456315-87456425	172.00	-95.98	112	NA
ENSG00000222041	hsa-mir-192	ENST00000409054	chr2:87455401-87455503	170.00	-91.99	109	NA
ENSG00000222041	hsa-mir-192	ENST00000409054	chr2:87455499-87455597	166.00	-90.65	107	NA
ENSG00000222041	hsa-mir-192	ENST00000409054	chr2:87455685-87455800	165.00	-85.49	104	NA
ENSG00000222041	hsa-mir-192	ENST00000409054	chr2:87455916-87456029	163.00	-96.26	113	NA
ENSG00000222041	hsa-mir-192	ENST00000409054	chr2:87456077-87456178	149.00	-76.19	108	NA
ENSG00000222041	hsa-mir-192	ENST00000409054	chr2:87455803-87455922	140.00	-92.73	115	NA
ENSG00000222041	hsa-mir-192	ENST00000331944	chr2:87455778-87455888	211.00	-101.52	101	NA
ENSG00000222041	hsa-mir-192	ENST00000331944	chr2:87455499-87455597	166.00	-90.65	107	NA
ENSG00000222041	hsa-mir-192	ENST00000331944	chr2:87455620-87455723	151.00	-80.22	107	NA
ENSG00000222041	hsa-mir-192	ENST00000409139	chr2:87455499-87455597	166.00	-90.65	107	NA
ENSG00000222041	hsa-mir-192	ENST00000409139	chr2:87455831-87455944	165.00	-78.16	111	NA
ENSG00000222041	hsa-mir-192	ENST00000409139	chr2:87455612-87455715	151.00	-83.24	100	NA
ENSG00000222041	hsa-mir-192	ENST00000409898	chr2:87455704-87455825	181.00	-88.00	118	NA
ENSG00000222041	hsa-mir-192	ENST00000409898	chr2:87455499-87455597	166.00	-90.65	107	NA
ENSG00000222041	hsa-mir-192	ENST00000409898	chr2:87455612-87455715	151.00	-83.24	100	NA
ENSG00000222041	hsa-mir-192	ENST00000409898	chr2:87455836-87455940	144.00	-86.01	108	NA
ENSG00000222041	hsa-mir-192	ENST00000419680	chr2:87456021-87456131	191.00	-93.46	97	NA
ENSG00000222041	hsa-mir-192	ENST00000419680	chr2:87455909-87456024	170.00	-84.62	114	NA
ENSG00000222041	hsa-mir-192	ENST00000419680	chr2:87455499-87455597	166.00	-90.65	107	NA
ENSG00000222041	hsa-mir-192	ENST00000419680	chr2:87455767-87455877	164.00	-82.31	109	NA
ENSG00000222041	hsa-mir-192	ENST00000419680	chr2:87455620-87455732	148.00	-93.72	116	NA
ENSG00000222041	hsa-mir-192	ENST00000414584	chr2:87456088-87456198	211.00	-101.52	101	NA
ENSG00000222041	hsa-mir-192	ENST00000414584	chr2:87455569-87455682	182.00	-113.03	113	NA
ENSG00000222041	hsa-mir-192	ENST00000414584	chr2:87455677-87455776	172.00	-83.98	106	NA
ENSG00000222041	hsa-mir-192	ENST00000414584	chr2:87455794-87455889	169.00	-86.20	92	NA
ENSG00000222041	hsa-mir-192	ENST00000414584	chr2:87455931-87456033	148.00	-74.89	94	NA
ENSG00000222041	hsa-mir-192	ENST00000455131	chr2:87456105-87456215	191.00	-93.46	97	NA
ENSG00000222041	hsa-mir-192	ENST00000455131	chr2:87455769-87455874	182.00	-74.71	108	NA
ENSG00000222041	hsa-mir-192	ENST00000455131	chr2:87456006-87456108	166.00	-77.44	108	NA
ENSG00000222041	hsa-mir-192	ENST00000455131	chr2:87455516-87455620	157.00	-84.67	108	NA
ENSG00000222041	hsa-mir-192	ENST00000455131	chr2:87455865-87455965	141.00	-65.21	91	NA
ENSG00000222041	hsa-mir-192	ENST00000423846	chr2:87455866-87455976	191.00	-93.46	97	NA
ENSG00000222041	hsa-mir-192	ENST00000423846	chr2:87455754-87455869	170.00	-84.62	114	NA
ENSG00000222041	hsa-mir-192	ENST00000423846	chr2:87455644-87455757	164.00	-94.11	116	NA
ENSG00000222041	hsa-mir-192	ENST00000414030	chr2:87470321-87470426	182.00	-74.71	108	NA
ENSG00000222041	hsa-mir-192	ENST00000414030	chr2:87470125-87470219	178.00	-76.83	106	NA
ENSG00000222041	hsa-mir-192	ENST00000414030	chr2:87470006-87470125	171.00	-104.62	113	NA
ENSG00000222041	hsa-mir-192	ENST00000414030	chr2:87470558-87470658	160.00	-86.77	109	NA
ENSG00000222041	hsa-mir-192	ENST00000414030	chr2:87470417-87470517	141.00	-65.21	91	NA
ENSG00000222041	hsa-mir-192	ENST00000437561	chr2:87470272-87470382	191.00	-93.46	97	NA
ENSG00000222041	hsa-mir-192	ENST00000437561	chr2:87470006-87470125	171.00	-104.62	113	NA
ENSG00000222041	hsa-mir-192	ENST00000437561	chr2:87470164-87470275	155.00	-78.46	111	NA
ENSG00000222041	hsa-mir-192	ENST00000629257	chr2:87469951-87470076	203.00	-97.85	126	NA
ENSG00000222041	hsa-mir-192	ENST00000629257	chr2:87470133-87470248	165.00	-85.49	104	NA
ENSG00000222041	hsa-mir-192	ENST00000413202	chr2:87509460-87509570	211.00	-101.52	101	NA
ENSG00000222041	hsa-mir-192	ENST00000413202	chr2:87509313-87509405	152.00	-71.57	107	NA
ENSG00000222041	hsa-mir-192	ENST00000603948	chr2:87580985-87581109	205.00	-97.62	119	NA
ENSG00000222041	hsa-mir-192	ENST00000603948	chr2:87581118-87581245	194.00	-113.44	125	NA
ENSG00000222041	hsa-mir-192	ENST00000603948	chr2:87581286-87581401	165.00	-85.49	104	NA
ENSG00000222041	hsa-mir-192	ENST00000612724	chr2:87581767-87581888	201.00	-106.40	123	NA
ENSG00000222041	hsa-mir-192	ENST00000612724	chr2:87581990-87582105	165.00	-85.49	104	NA

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Variants for CYTOR

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_78858	ENSG00000222041.9	chr2	87480821	+	lincRNA	LINC00152	ENST00000629257.1	lincRNA	LINC00152-014
LncEditing_78958	ENSG00000222041.9	chr2	87480877	+	lincRNA	LINC00152	ENST00000629257.1	lincRNA	LINC00152-014
LncEditing_79208	ENSG00000222041.9	chr2	87482063	+	lincRNA	LINC00152	ENST00000629257.1	lincRNA	LINC00152-014

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000222041	LncEditing_78858	STAD	chr2_87480821_+	5.066115e+00	3.347682e+00	1.673032e+00	5.980596e+00	2.223227e-09	3.340672e-09	UP
ENSG00000222041	LncEditing_78958	STAD	chr2_87480877_+	4.686341e+00	3.519623e+00	2.421067e+00	3.859392e+00	1.136696e-04	1.283713e-04	UP
ENSG00000222041	LncEditing_79208	STAD	chr2_87482063_+	4.970527e+00	3.464222e+00	1.919874e+00	4.013155e+00	5.991266e-05	6.874594e-05	UP
ENSG00000222041	LncEditing_78858	ESCA	chr2_87480821_+	4.725460e+00	3.079229e+00	1.618423e+00	3.844901e+00	1.206013e-04	1.499290e-04	UP
ENSG00000222041	LncEditing_79208	ESCA	chr2_87482063_+	5.021886e+00	3.002217e+00	1.347344e+00	4.135163e+00	3.547030e-05	4.675833e-05	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000222041	CYTOR,hsa-mir-30e,CKAP4	KICH,TGCT,CHOL,THYM,LIHC
ENSG00000222041	CYTOR,hsa-mir-30e,CTHRC1	KICH,TGCT,CHOL,THYM,LIHC
ENSG00000222041	CYTOR,hsa-mir-30e,RAB13	KICH,TGCT,CHOL,THYM,LIHC
ENSG00000222041	CYTOR,hsa-mir-30e,NES	KICH,TGCT,CHOL,THYM,LIHC
ENSG00000222041	CYTOR,hsa-mir-30e,TLCD3A	KICH,TGCT,CHOL,THYM,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,MRC2	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,COL6A1	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,MDFIC	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,MTHFD1L	TGCT,CHOL,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,NLGN2	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,CHSY1	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,MARCKS	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,A4GALT	TGCT,CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,VAT1	TGCT,CHOL,READ,PAAD,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,PHTF2	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,ARHGEF25	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,CYTH3	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,FHL3	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,AXL	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-192,CERCAM	CHOL,READ,PAAD,KIRP,LIHC
ENSG00000222041	CYTOR,hsa-mir-328,TMSB10	PCPG,CHOL,ACC,UCS,THYM
ENSG00000222041	CYTOR,hsa-mir-328,TAGLN2	PCPG,CHOL,ACC,UCS,THYM
ENSG00000222041	CYTOR,hsa-mir-328,EIF4EBP1	PCPG,CHOL,ACC,UCS,THYM

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000222041.9	ENST00000409054.1	104	564	878
ENSG00000222041.9	ENST00000331944.9	71	607	392
ENSG00000222041.9	ENST00000409139.4	102	222	527
ENSG00000222041.9	ENST00000409898.2	61	186	371
ENSG00000222041.9	ENST00000419680.5	81	429	184
ENSG00000222041.9	ENST00000414584.1	67	473	673
ENSG00000222041.9	ENST00000455131.4	127	480	97
ENSG00000222041.9	ENST00000423846.4	89	145	414
ENSG00000222041.9	ENST00000414030.4	90	270	1
ENSG00000222041.9	ENST00000437561.1	100	219	521
ENSG00000222041.9	ENST00000629257.1	67	253	453
ENSG00000222041.9	ENST00000413202.1	69	27	236
ENSG00000222041.9	ENST00000603948.4	101	119	421
ENSG00000222041.9	ENST00000612724.1	99	311	12

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential