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lncRNA: ENSG00000214049

Summary for UCA1

Gene summary

Gene information	Ensembl ID	ENSG00000214049
	Gene symbol	UCA1
	Gene name	urothelial cancer associated 1
	HGNC	37126
	Entrez ID	652995
	Gene type	processed_transcript
	Synonyms	19p13.12\|UCA1
	UniProtAcc

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Structure and expression level for UCA1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000214049	4.487077e+03	5.137090e+00	8.307732e-01	6.183505e+00	6.270000e-10	7.230000e-09	UP	CHOL
ENSG00000214049	6.012077e+03	2.077878e+00	5.870666e-01	3.539424e+00	4.010010e-04	1.744278e-03	UP	BLCA
ENSG00000214049	1.043089e+02	2.545919e+00	5.238229e-01	4.860267e+00	1.170000e-06	5.040000e-06	UP	KIRP
ENSG00000214049	1.363901e+02	4.646259e+00	3.279881e-01	1.416594e+01	1.490000e-45	3.050000e-44	UP	LUSC
ENSG00000214049	1.315873e+02	4.581429e+00	3.553399e-01	1.289309e+01	4.920000e-38	1.500000e-36	UP	LUAD
ENSG00000214049	8.926983e+02	3.960760e+00	3.212326e-01	1.232988e+01	6.250000e-35	2.250000e-33	UP	COAD
ENSG00000214049	1.483086e+03	3.566063e+00	4.426550e-01	8.056078e+00	7.880000e-16	2.700000e-14	UP	STAD
ENSG00000214049	1.755042e+03	5.013592e+00	6.428523e-01	7.798980e+00	6.240000e-15	4.700000e-13	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for UCA1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for UCA1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for UCA1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for UCA1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID	LncRNA Name	SNP info	Number of Positive corelated Cancer	Positive corelated Cancer	Number of Negative corelated Cancer	Negative corelated Cancer
ENSG00000214049	UCA1	rs7255437:15939104:A:G:-	0		6	PRAD,LUAD,OV,LUSC,HNSC,BRCA
ENSG00000214049	UCA1	rs12611037:15942398:C:A	7	PRAD,LUAD,PAAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs7247124:15939257:T:C	6	PRAD,LUAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs144066565:15939648:A:AAAC	6	PRAD,LUAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs7259139:15939692:C:T	6	PRAD,LUAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73927741:15939887:C:T	6	PRAD,LUAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73927742:15939996:C:T	6	PRAD,LUAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73003263:15940005:T:G	6	PRAD,LUAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73003267:15940045:C:T	6	PRAD,LUAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs7257792:15939340:G:A	6	PRAD,LUAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs55754805:15942120:T:C	7	PRAD,LUAD,PAAD,OV,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73003269:15940075:T:C	5	PRAD,LUAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs12610921:15942250:G:A	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs76958841:15940619:A:AT	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73003273:15940659:G:A	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73003275:15940750:G:A	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs57629035:15941100:C:T	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs61578120:15941166:C:A	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs59124647:15941177:C:T	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs61305082:15941368:T:C	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs59539750:15941417:G:A	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs55655816:15941419:C:T	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs55830840:15941815:A:G	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs56261707:15942056:C:T	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs12611012:15942258:C:T	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs12610960:15942514:G:C	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs7259448:15939539:A:G	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73005445:15941455:A:G	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs79373479:15940480:C:T	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs56136909:15942195:G:A	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs17750057:15931861:C:A	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs61022771:15936917:G:A	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs74953011:15937598:G:C	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73005435:15941009:A:C	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs113579010:15941062:A:G	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs60590877:15941073:A:C	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs73005437:15941019:A:C	6	PRAD,LUAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs1008153:15949405:T:C	5	PRAD,PAAD,LUSC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs7259864:15930122:G:C	5	PRAD,LUAD,PAAD,HNSC,BRCA	0
ENSG00000214049	UCA1	rs62106074:15913239:C:T	4	PRAD,PAAD,HNSC,BRCA	0
ENSG00000214049	UCA1	rs111232881:15915189:C:A	4	PRAD,PAAD,HNSC,BRCA	0
ENSG00000214049	UCA1	rs138510193:15928869:TA:T	5	PRAD,LUAD,PAAD,HNSC,BRCA	0
ENSG00000214049	UCA1	rs17641311:15909516:C:T	5	PRAD,LUAD,PAAD,HNSC,BRCA	0
ENSG00000214049	UCA1	rs55924438:15925471:T:A	3	PRAD,PAAD,HNSC	0
ENSG00000214049	UCA1	rs62106087:15925498:A:G	3	PRAD,PAAD,HNSC	0
ENSG00000214049	UCA1	rs75294014:15925453:G:GCTAAGA	1	PRAD	0
ENSG00000214049	UCA1	rs61739573:15918455:G:A	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs12973285:15935251:G:T	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs2285882:15934830:C:G:-	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7255745:15935821:C:T	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs7255868:15935935:C:T	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs1036251:15907115:C:T:-	4	PRAD,LUAD,HNSC,BRCA	0
ENSG00000214049	UCA1	rs56209253:15943284:T:C	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs7255189:15926598:A:G	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs2365546:15919665:A:T	0		3	PRAD,HNSC,BRCA
ENSG00000214049	UCA1	rs8112357:15927014:T:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs12608494:15885942:C:T	5	PRAD,LUAD,LIHC,HNSC,BRCA	0
ENSG00000214049	UCA1	rs8103263:15921848:C:T:-	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs12611296:15855228:G:A	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs55869567:15876420:G:T	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs929296:15854122:G:A	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs2240228:15852872:G:A	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs112352328:15853896:C:T	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs3752149:15840075:A:C	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs368682039:15840222:CGGTCTGGACAACATA:C	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs377450387:15841699:TTTG:T	4	PRAD,LUAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs12609664:15842251:A:G	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs72993668:15843125:A:T	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs56276316:15910997:T:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs56061752:15830930:T:G	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs72993662:15832348:T:C	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs62106075:15913495:G:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs1986769:15916477:T:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs56034912:15910657:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs35120984:15915611:G:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs35966143:15916662:TCA:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs2017631:15916242:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs28426969:15918380:C:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs55999194:15910996:G:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7254751:15926640:C:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs916959:15922502:G:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs916960:15922724:C:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs916961:15922757:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs28758833:15920751:T:C	0		1	PRAD
ENSG00000214049	UCA1	rs118017004:15914289:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs916958:15922336:T:C	0		1	PRAD
ENSG00000214049	UCA1	rs59207138:15923252:A:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs60183470:15920625:AT:A	0		1	PRAD
ENSG00000214049	UCA1	rs60563959:15921708:T:TA	0		1	PRAD
ENSG00000214049	UCA1	rs55854413:15797558:G:A	3	PRAD,LIHC,BRCA	0
ENSG00000214049	UCA1	rs111572945:15833384:C:CATTTTGCCA	0		1	PRAD
ENSG00000214049	UCA1	rs28665200:15950698:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs10407836:15917010:G:A	0		1	PRAD
ENSG00000214049	UCA1	rs112331248:15915665:C:T	0		1	PRAD
ENSG00000214049	UCA1	rs10411396:15913802:G:A	0		1	PRAD
ENSG00000214049	UCA1	rs11667719:15910428:G:A	0		1	PRAD
ENSG00000214049	UCA1	rs4808368:15830583:A:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs1859300:15947062:C:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs916957:15947217:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs8102640:15921099:T:G	0		1	PRAD
ENSG00000214049	UCA1	rs58968833:15937057:C:A	0		1	PRAD
ENSG00000214049	UCA1	rs11085993:15937579:C:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs3761013:15933059:A:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs4808388:15935221:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs67455341:15905661:C:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs11880726:15929668:C:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs11880538:15929684:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs149109868:15895893:GT:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7251184:15928175:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs8102095:15912408:A:G:+	0		1	PRAD
ENSG00000214049	UCA1	rs2285881:15934599:C:G:-	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs7249878:15925933:G:A	0		1	PRAD
ENSG00000214049	UCA1	rs7257698:15945244:T:C	0		1	PRAD
ENSG00000214049	UCA1	rs11085995:15942920:C:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs56117700:15905941:T:C	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs10402065:15930146:A:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7247978:15948386:T:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs4346311:15927749:T:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7260207:15948546:A:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7258797:15948562:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs8102407:15949895:C:T:-	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs8109712:15951292:G:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs8100033:15951302:T:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7257139:15950755:T:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs11085998:15950945:T:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs12461657:15949030:A:G:-	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7246150:15815836:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs11085999:15951195:T:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7260095:15929288:A:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7260475:15929518:A:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7259196:15929638:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7260526:15929923:C:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs4375788:15927455:C:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs2214534:15927770:C:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs6512062:15928010:C:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs4808385:15928261:A:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs2886388:15927610:A:G	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs1541388:15950409:T:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs1541389:15950434:C:T	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs12151252:15798039:A:T	2	PRAD,BRCA	0
ENSG00000214049	UCA1	rs11085971:15796813:A:C:-	0		1	PRAD
ENSG00000214049	UCA1	rs144762060:15914155:AGAAGG:A	0		1	PRAD
ENSG00000214049	UCA1	rs28654380:15916656:G:A	0		1	PRAD
ENSG00000214049	UCA1	rs147972650:15926910:T:TTTTATTTTTA	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs60930972:15922034:C:T	0		1	PRAD
ENSG00000214049	UCA1	rs8112378:15927056:T:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs372834780:15923589:CAGGAGCCGATCACGTCTGT:C	0		1	PRAD
ENSG00000214049	UCA1	rs8112498:15927150:T:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs8112150:15926849:T:G	0		1	PRAD
ENSG00000214049	UCA1	rs8108599:15927320:T:C	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs2285955:15838967:G:A	1	PRAD	0
ENSG00000214049	UCA1	rs4300771:15927810:G:A	0		2	PRAD,BRCA
ENSG00000214049	UCA1	rs7253816:15793062:G:A	1	PRAD	0
ENSG00000214049	UCA1	rs12608790:15965245:A:G	1	BRCA	0
ENSG00000214049	UCA1	rs7251874:15962509:A:G:+	1	BRCA	0
ENSG00000214049	UCA1	rs599741:15801367:A:C:-	0		1	BRCA
ENSG00000214049	UCA1	rs626223:15802686:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs627971:15803094:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs665872:15803106:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs629651:15803417:T:G	0		1	BRCA
ENSG00000214049	UCA1	rs611848:15808379:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs593818:15807884:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs10558201:15803983:TAA:TA	0		1	BRCA
ENSG00000214049	UCA1	rs633553:15796363:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs660247:15796507:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs3214194:15796801:A:AG	0		1	BRCA
ENSG00000214049	UCA1	rs4239625:15828321:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs9284441:15809652:T:G	0		1	BRCA
ENSG00000214049	UCA1	rs668093:15811733:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs641800:15810498:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs637849:15810794:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs9284440:15809615:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs2285888:15793235:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs3848642:15795032:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs8111286:15793788:G:C	0		1	BRCA
ENSG00000214049	UCA1	rs4808360:15798015:T:A	0		1	BRCA
ENSG00000214049	UCA1	rs12975288:15818061:G:A	0		1	BRCA
ENSG00000214049	UCA1	rs4808362:15803892:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs4808377:15894514:G:T:-	1	BRCA	0
ENSG00000214049	UCA1	rs12983063:15824746:T:A	0		1	BRCA
ENSG00000214049	UCA1	rs12983344:15824859:T:G	0		1	BRCA
ENSG00000214049	UCA1	rs12972874:15894285:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs4808381:15905431:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs8108181:15927046:G:C	1	BRCA	0
ENSG00000214049	UCA1	rs12978079:15833756:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs4808366:15828172:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs5827300:15829458:A:AT	0		1	BRCA
ENSG00000214049	UCA1	rs2365811:15826688:A:C	0		1	BRCA
ENSG00000214049	UCA1	rs2365810:15826806:A:T	0		1	BRCA
ENSG00000214049	UCA1	rs2365809:15826989:A:T	0		1	BRCA
ENSG00000214049	UCA1	rs4239623:15827275:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs892214:15902208:T:G	0		1	BRCA
ENSG00000214049	UCA1	rs754695:15902369:A:C	0		1	BRCA
ENSG00000214049	UCA1	rs3859568:15827090:T:A	0		1	BRCA
ENSG00000214049	UCA1	rs4808364:15825611:G:A	0		1	BRCA
ENSG00000214049	UCA1	rs3888205:15827152:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs757372:15826442:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs4315452:15829398:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs4807977:15831793:G:T	0		1	BRCA
ENSG00000214049	UCA1	rs757373:15826599:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs11085972:15798520:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs4807974:15827465:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs4510147:15828629:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs12978517:15828959:G:T	0		1	BRCA
ENSG00000214049	UCA1	rs4381710:15829364:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs4315453:15829379:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs10854149:15829748:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs4808369:15830869:T:G	0		1	BRCA
ENSG00000214049	UCA1	rs10854150:15831278:C:G	0		1	BRCA
ENSG00000214049	UCA1	rs4807975:15831496:A:C	0		1	BRCA
ENSG00000214049	UCA1	rs4807978:15831958:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs12609778:15832316:A:T	0		1	BRCA
ENSG00000214049	UCA1	rs12610159:15832839:T:G	0		1	BRCA
ENSG00000214049	UCA1	rs12609849:15832930:A:T	0		1	BRCA
ENSG00000214049	UCA1	rs12609783:15832395:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs12975189:15832426:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs12980080:15828876:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs11085979:15832076:A:T	0		1	BRCA
ENSG00000214049	UCA1	rs10719216:15803727:TA:TAA	0		1	BRCA
ENSG00000214049	UCA1	rs2365812:15825739:A:C:+	0		1	BRCA
ENSG00000214049	UCA1	rs4808361:15800069:A:C	0		1	BRCA
ENSG00000214049	UCA1	rs60608678:15816449:T:TA	0		1	BRCA
ENSG00000214049	UCA1	rs4807973:15822636:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs12462063:15809547:A:T	0		1	BRCA
ENSG00000214049	UCA1	rs12983968:15809945:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs12976669:15810312:A:C	0		1	BRCA
ENSG00000214049	UCA1	rs12461636:15812328:C:A	0		1	BRCA
ENSG00000214049	UCA1	rs12461680:15812558:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs12459608:15812744:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs2886476:15811717:A:C	0		1	BRCA
ENSG00000214049	UCA1	rs12973361:15798101:A:C	0		1	BRCA
ENSG00000214049	UCA1	rs9748966:15820638:C:G	0		1	BRCA
ENSG00000214049	UCA1	rs9748998:15821104:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs11879088:15816573:C:G	0		1	BRCA
ENSG00000214049	UCA1	rs76753370:15822390:A:T	0		1	BRCA
ENSG00000214049	UCA1	rs11669240:15808025:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs4808379:15905002:C:T:+	1	BRCA	0
ENSG00000214049	UCA1	rs7255335:15811079:G:C	0		1	BRCA
ENSG00000214049	UCA1	rs143729520:15802572:ATTTTTATGAAG:A	0		1	BRCA
ENSG00000214049	UCA1	rs12975815:15833958:C:T:-	0		1	BRCA
ENSG00000214049	UCA1	rs10410175:15815733:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs147204503:15817815:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs4807972:15797883:C:T	0		1	BRCA
ENSG00000214049	UCA1	rs590828:15813919:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs8100518:15806187:T:C	0		1	BRCA
ENSG00000214049	UCA1	rs9797882:15896715:T:G	0		1	BRCA
ENSG00000214049	UCA1	rs1002511:15897383:A:C	0		1	BRCA
ENSG00000214049	UCA1	rs4808378:15895770:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs147726476:15896174:G:A	0		1	BRCA
ENSG00000214049	UCA1	rs11399641:15816402:C:CT	0		1	BRCA
ENSG00000214049	UCA1	rs1023720:15898724:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs754696:15902419:A:G	0		1	BRCA
ENSG00000214049	UCA1	rs1865121:15888344:A:G	1	BRCA	0

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000214049.6	ENST00000397381.4	51	361	206
ENSG00000214049.6	ENST00000589333.2	102	1199	1507
ENSG00000214049.6	ENST00000600160.2	69	225	431

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential