lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | ARHGEF1,GSDMB,VAMP1,EPOR,TCEA2,ISG20,TNFRSF4,DUSP2,MFSD8,LTB,ABHD17A,TMEM234,ADAM19,BRD1,MAST3,CIRBP,MZF1,TTC31,ILDR1,RGS10,MAPK8IP3,HMCES,TAP2,N4BP2L2,DCLRE1C,MKNK1,DMTF1,ANKRD44,NUP62,FAM193A,UNKL,CD69,CALHM6,LMBR1L,GPCPD1,CLEC10A,RUBCNL,TRAPPC12,ULK3,KMT2B,IRAK4,STAT2,RFTN1,CENATAC,NPEPL1,SNRPA,TP53INP1,TMC8,SAFB2,KCTD13,MSANTD2,TUBGCP6,MREG,CCDC14,INF2,SPI1,CD27,EVPL,CLK4,GIMAP7,DENND1C,LCK,ZBED5,PRKD2,ATXN7L3,CD37,SPOCK2,ARHGAP40,TTC14,SLC37A1,MOB3A,SPRN,SUGP1,TAZ,SPG7,CD74,SRSF4,TMEM106A,PPP1R13L,MLKL,CLCN6,ECHDC2,OGT,CCR7,NOD1,COX19,POLD1,CLK2,KLRB1,GDPD5,ILKAP,FIG4,POLG2,DHX34,CHKB,METTL17,JAK3,FLI1,RAPGEF3,TRIM11,DHX58,MAP4K1,SEPTIN6,WDR83,OSGEP,USF1,CTC1,CLK1,IL12RB1,NASP,RABL2A,LLGL2,PAOX,OFD1,MOV10,CARS2,SLC48A1,ACYP1,SLC25A29,ADAM8,FCHSD1,TMEM243,CC2D1B,RBM38,SUN2,GZMM,ANO8,HGS,HSH2D,INO80E,HCLS1,C3orf62,APBA3,CBX7,MAP3K14,CCDC28A,EML4,SETD5,SAMSN1,DOCK10,FCER2,ITPKB,BIN2,HLA-DMA,ORMDL1,LPAR2,SH2D3A,DDX51,AGER,MBD4,NFAM1,SPOUT1,SRSF2,C1orf52,CUL9,CDK11A,POGLUT1,TECPR1,DOK3,SYMPK,FBXW4,PASK,TSEN54,LRRC37B,ATG4B,FYN,LMNTD2,CCDC191,NXF1,DCUN1D2,SLC2A6,SRCIN1,NR2C2,PAN2,BMF,SLFN13,IRAG2,IL27RA,PPP1R9B,CDKN2D,GIGYF1,PARP10,UNC13D,CD72,TMEM273,CCDC69,FAM193B,ABCA7,TMCO6,SLC25A28,CXCR3,PIK3C2B,GRK3,ZFC3H1,TAGAP,KLHL17,N4BP2L1,DNASE1,TMEM184A,HEXD,LPAR5,DDX42,VCPKMT,SCNN1D,CCDC24,MRPS25,POLM,TXNIP,RBP5,MPZL3,FMNL3,HLA-DMB,BRD4,ERCC5,IKZF3,GCA,MAX,HCST,FAAP100,ATM,ARHGEF2,SLC26A11,STAMBPL1,PTK2B,FANCL,NCF4,ILF3,PLEKHG5,STK17B,SP140,GLI4,LENG8,SH2B1,CDC42SE1,PHKA2,RANBP3,STK11,C1orf159,PPP1R12C,ATP2A3,DGKA,PRR3,UBE2G2,IP6K2,PPOX,ARIH2,PPWD1,FAM102A,MLLT6,CYB561A3,C16orf54,UCP2,INO80D,GPSM3,TRIM65,CRLF3,DDX55,RASAL3,TESK2,ADPRM,ARFGAP1,CASP2,CAPN10,BICDL2,CD19,AP1G2,RASAL1,FAM111A,BANP,TNFAIP3,THOC1,ANKMY1,PML,LPXN,AKNA,RIPK3,LRRC25,NUMA1,FAM107B,PHF12,GPN2,TNK2,INTS11,ARHGAP27,RALGPS2,REXO1,CD8A,FOXP3,NBEAL2,CSNK1D,PARP12,CD48,RASGRP2,PIK3AP1,GDPD3,CACNB1,ZNF44,NCKAP1L,NPDC1,LTO1,LCP2,TRAF1,PIDD1,FGR,CD247,MTUS1,SEMA4D,FNBP1,CCDC137,ALS2CL,HLA-DQB1,NUP210,FBXO44,ICAM2,RNF135,METTL23,ANKDD1A,EXD3,NFKBID,LRIG2,P4HTM,CABLES2,ABTB1,PCED1A,TASL,SLX4,PDCD1,CIITA,IKBKB,NBPF11,BRF1,ACIN1,CD79B,MS4A1,ARHGAP17,ENOSF1,MAU2,CD3G,PIK3R5,ANKRD49,PAXBP1,TNFRSF13C,LY75,SCIMP,UNC93B1,ITK,FNBP4,DENND6B,PRMT7,LRRC56,ZFYVE19,INPP5E,SYNRG,ARHGDIB,PHF11,RSRP1,RHBDF2,PPM1K,SSH2,NEK8,CHD2,LAG3,PTPN6,CLEC2D,SYNGR2,MCOLN2,PTPN22,LTB4R,KIFC2,EXOC3L4,ODF3B,HEMK1,CNPY3,LINS1,PRAM1,ROGDI,RABEP2,TRIM22,OGFR,GSAP,STAT6,GGA2,DOCK8,C2orf68,SCARF1,NDUFAF7,NOL4L,RBM6,DRAM2,TRMT13,PARVG,ZNF862,WBP2,IDUA,TMEM134,ARRB2,ORAI3,CCDC142,RASSF5,RAC2,MYL5,CD3D,NLRP1,FRMD8,DOK2,BTN2A2,CETP,TNFRSF14,ZHX2,WDR27,CASP1,UBXN11,EME2,LAIR1,KHDC4,DCAF15,CROCC,PLXNB1,USF2,PPP1R26,HPS4,PNISR,SFPQ,TMEM63A,FHOD1,LCP1,PTPN7,CEPT1,CARD8,SIGLEC10,PLA2G2D,SRSF7,NISCH,CCDC97,ATAT1,IFFO1,DNMT1,PLCG1,SESN1,MYO1F,RASSF1,MYO9B,TRMU,PPP1R18,KLF12,NAGK,ITGB2,GZMH,CTBP1,BICRA,TACC3,PKP4,ATXN7L2,PARP15,STARD3,CHTF18,IL4R,AKAP8,TFEB,PLEK,FBXO41,TJAP1,RNF44,ITGB7,FMNL1,C1orf35,CEP95,ACAP1,TBRG1,STING1,TBP,CD4,CD79A,ZCWPW1,NPRL2,KLHDC4,CCNL2,PCED1B,CCDC115,CLK3,RNPC3,AFMID,ANKRD10,IRF1,TENT4A,TNFRSF1B,HDAC11,VPS9D1,LRCH3,GABBR1,CHTOP,SNX20,MSL3,KANSL3,EHBP1L1,SCAF4,CCNT2,STAT4,RAB40B,OSBPL7,SP100,SEPTIN1,KAT2A,ACBD4,SLC17A9,SIPA1,BCL2A1,RBM26,CLDND1,PLA2G6,MARCHF1,ZBTB3,MROH6,RBM25,VAV1,FBXW7,ARAP1,CD7,RHPN1,ENDOV,P2RY8,COL9A2,CLSTN3,RARG,CLDN15,TAPBP,LNPEP,IRF7,PRPF39,RESF1,SERTAD2,ERMARD,SIRPG,FAM117A,EPS8L1,FAM53B,ENTPD4,SGSH,SRRM2,MIB2,DPEP2,WHRN,PIK3IP1,PHF1,MTHFR,HAPLN3,HDAC10,TGIF2,SCRN2,GMFG,HSF4,ARGLU1,ANKS3,NOXA1,YJEFN3,CCNL1,CEACAM21,RUBCN,RGL3,IRF2,SLC9A9,SGSM2,INPP1,VMAC,TCL1A,KRI1,DBNL,BTK,MADD,MICALL2,AMPD3,CRYGS,DENND2D,HLA-DOB,LBHD1,QRICH1,MFNG,MOB3C,JUP,ZGPAT,ADCY6,PPM1M,TIA1,HOOK2,BIRC3,ZNF83,RETREG3,TMUB2,PLCG2,SP110,NSUN6,KLHL6,DNMT3A,ABCD4,PTPN2,CERKL,ERCC3,C15orf62,NEIL1,SZT2,POLE,DDX5,GRIPAP1,PLCB2,NAT9,UBA7,LIPT1,LRRK1,STK4,CXCR6,IL2RB,RASSF4,CRAMP1,IGFLR1,LUC7L,WDR6,PNN,LUC7L2,RUNX3,MAP2K7,SAMD9L,DPH7,CCL5,CBX8,POU6F1,TRA2A,NSMCE4A,ORAI2,CEP131,DUS1L,SH2D3C,NEURL4,HINFP,PREX1,NR2C1,CRTC2,APBB3,NRIP2,CYTH2,RCC2,WBP1,RBM33,NOL8,NADSYN1,LRCH4,SRRT,AGAP6,WRAP73,MYO1G,GABPB2,TNFRSF18,SH2D2A,RBM39,ODF2L,TNFAIP2,SLC26A6,PGS1,MSL2,UBE2I,IRF3,CLEC16A,EAF2,BLNK,NRF1,SLA2,RFX5,SNAI3,ZXDC,SEL1L3,APOBR,GAK,KAT8,INTS3,PIGL,ARHGAP30,SELPLG,CSAD,AGAP3,KIAA0895L,RINL,DDX39A,TBC1D10C,ABCA2,TRANK1,SAMD10,CD52,MUTYH,DCAF8,LAMA5,KIF21B,PHYKPL,TMEM259,CD1D,CACTIN,LST1,OGA,PYCR2,RECQL5,PAN3,PHKG2,MED28,NARF,SARS2,ARHGAP4,SELL,ASB6,TBC1D17,ZC3H4,SUPT7L,RALGDS,HLA-DOA,HID1,ARHGAP9,RIPOR2,CENPT,CYTH1,PACS2,S100PBP,CFAP410,CARD11,EMB,MTG1,FAM76B,POGZ,PLEKHH3,CXCR4,VNN2,ARRDC2,C2CD2L,SH2B2,TSC2,CYTIP,RHOG,PCNT,ANAPC2,TAF1C,TRAF3,MAP3K12,SIT1,LCAT,TRAPPC14,ARHGAP45,RHBDF1,HVCN1,CAPN15,CNKSR1,MAL,CXXC1,EZH1,SKAP1,MRNIP,ELMOD3,DDX17,FERMT3,TRIM62,GSTM2,NECAP2,ING4,MED15,HAUS5,APOL3,SENP7,CHFR,MTRF1,RAD52,REC8,HDAC7,DYRK1A,MARF1,GZMK,PGGHG,LAT2,TELO2,CDAN1,WSB1,IL18BP,PCYOX1L,GAB3,LAPTM5,ANO9,ITGAL,CBLN3,PSTPIP2,USP21,PTGDS,TIGD1,KLC1,GPS2,TRIM52,NOL12,DFFB,TTC13,ADGRG5,MBD6,CWC25,STK36,HMGN1,TTC32,MICAL1,AGAP2,ZMAT1,GOLGA8B,GRB2,FAM78A,GIMAP6,ALPK1,STRADA,SMG9,NLRC3,CCDC88C,ZNF18,LZTS2,GOLGA8A,ABI3,PAM16,MPEG1,SETD4,HLA-E,RFX1,RNPEPL1,PIKFYVE,AARSD1,GMEB2,DUSP28,RBM5,APOBEC3D,PLXND1,FYB1,NKTR,YPEL3,SAP30BP,CNP,PLEKHO1,C19orf71,IL2RG,TTLL3,SLC25A45,GBP4,ETS1,RXRB,PARP6,RCSD1,STK10,WDR33,OBSCN,TBC1D10A,SLAMF6,GNGT2,PLEKHN1,LRP5L,TSC1,SH3GLB2,MAP4K2,DENND4B,TEP1,USPL1,JAG2,USP20,TMC6,DPP9,EBI3,MRPL38,WHAMM,LIG1,NELFA,NFKBIE,CCDC57,RABL2B,TRAPPC2,SIRT7,STK38 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | DCAF8,NPDC1,STAP1,CD3G,GTF2H4,RUNX3,DNASE1,HLA-DRA,SLA2,CD19,SGSH,ATAT1,ZMAT1,PGS1,HAUS5,ADRBK2,DGCR8,CDC42EP1,ALPK1,RNF213,DOCK2,OXLD1,TJAP1,RLTPR,HSH2D,LPAR2,STX16,TBC1D10C,IGFLR1,HEMK1,TBP,DDX17,TNFAIP8L2,REC8,UBA7,MSL2,RBM5,CD2,TIGD1,C9orf114,TMEM106A,ING4,IL3RA,RGL3,DAPP1,PLEKHG5,UCP2,GPR65,LSP1,ZNF83,LBHD1,CCDC64B,CWC25,KIAA1551,ADAM19,PIK3IP1,APOBR,RASAL3,TATDN2,INTS3,AGO4,C7orf43,HIP1R,SH2D2A,ENOSF1,CXorf21,TRAF3IP3,PIK3CD,MAPK8IP3,CDC42SE1,DPEP2,TMCO6,SNX20,SIN3B,MZF1,RAD9A,ICAM2,C3orf62,VAMP1,FCRLA,MYL5,PAPLN,SLC48A1,CD3D,CNOT3,RNF135,KIAA0907,STRADA,FYB,IKZF3,ARHGEF1,RAPGEF3,TBKBP1,DNMT1,MAU2,SETD4,CCDC97,GIMAP6,SIT1,ACCS,RABEP2,CCDC137,CHFR,C2orf68,GRIPAP1,PIK3C2B,WSB1,GGA1,CCDC130,TNFRSF13C,SLC26A11,AMPD3,PIK3R5,ARRDC2,LAIR1,TAGAP,FAM111A,CYTH2,SUGP1,MFSD8,MLXIP,CD48,NCF1,CCNL1,ITPKB,S100PBP,CEP135,GZMM,CFLAR,RCAN3,LCP2,TRIM22,AARSD1,FAM65B,SLX4,SYNGR2,HECA,RBM6,ERCC3,ARHGAP30,MED28,CCL21,FOXK2,BTN2A2,AP4B1,FGD2,MDM4,CIRBP,FLI1,CASP10 | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | P4HB,GOT1,ATP5F1B,MIPEP,SLC25A3,ADH5,MRPL15,HSPA9,MAIP1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000204282 | ENST00000589217 | exon_skip_75398 | chr11:72692752-72692785 | -13.51 | -0.7111 | ARAP1 | ENST00000393605 | In-frame | ENSG00000204282 | ENST00000589217 | exon_skip_302276 | chr19:10808568-10808580 | -7.62 | -3.8100 | DNM2 | ENST00000355667 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000204282 | ENST00000589217 | exon_skip_143275 | chr16:24939363-24939597 | -33.63 | -0.1557 | ARHGAP17 | ENST00000289968 | In-frame | ENSG00000204282 | ENST00000589217 | exon_skip_482403 | chr8:27445793-27445919 | -16.32 | -0.1700 | PTK2B | ENST00000346049,ENST00000397501 | In-frame | ENSG00000204282 | ENST00000589217 | exon_skip_499791 | chr9:128627924-128627942 | -5.75 | -0.5227 | SPTAN1 | ENST00000372731 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | LncEditing_336890 | ENSG00000204282.4 | chr17 | 78108936 | - | processed_transcript | TNRC6C-AS1 | ENST00000592939.1 | retained_intron | TNRC6C-AS1-002 | LncEditing_336892 | ENSG00000204282.4 | chr17 | 78108937 | - | processed_transcript | TNRC6C-AS1 | ENST00000592939.1 | retained_intron | TNRC6C-AS1-002 |
Edited-associated DElncRNAs in cancer. |
 |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | ENSG00000204282 | LncEditing_336890 | UCS | chr17_78108936_- | 5.434100e+00 | 2.347878e+00 | 8.259794e-01 | 3.257856e+00 | 1.122573e-03 | 2.378334e-03 | UP | ENSG00000204282 | LncEditing_336890 | UVM | chr17_78108936_- | 3.883544e+00 | 2.206510e+00 | 1.226080e+00 | 3.957660e+00 | 7.568769e-05 | 1.699533e-04 | UP | ENSG00000204282 | LncEditing_336890 | THCA | chr17_78108936_- | 6.751295e+00 | 5.193377e+00 | 2.642069e+00 | 4.360797e+00 | 1.295897e-05 | 1.740205e-05 | UP | ENSG00000204282 | LncEditing_336890 | THYM | chr17_78108936_- | 6.251829e+00 | 4.976991e+00 | 3.039471e+00 | 2.090043e+00 | 3.661394e-02 | 3.779954e-02 | UP | ENSG00000204282 | LncEditing_336890 | OV | chr17_78108936_- | 2.372538e+00 | 1.646305e+00 | 1.896814e+00 | 6.305280e+00 | 2.876724e-10 | 5.014499e-10 | UP | ENSG00000204282 | LncEditing_336892 | OV | chr17_78108937_- | 2.259629e+00 | 1.786162e+00 | 2.947915e+00 | 4.261739e+00 | 2.028426e-05 | 2.446083e-05 | UP | ENSG00000204282 | LncEditing_336890 | LUAD | chr17_78108936_- | 4.987543e+00 | 3.009052e+00 | 1.371704e+00 | 6.895252e+00 | 5.376935e-12 | 8.466229e-12 | UP | ENSG00000204282 | LncEditing_336890 | STAD | chr17_78108936_- | 1.711305e+00 | 1.191471e+00 | 1.914411e+00 | 5.278621e+00 | 1.301594e-07 | 1.713127e-07 | UP | ENSG00000204282 | LncEditing_336890 | CESC | chr17_78108936_- | 4.293073e+00 | 2.467666e+00 | 1.251778e+00 | 4.630526e+00 | 3.647374e-06 | 4.938480e-06 | UP | ENSG00000204282 | LncEditing_336890 | ESCA | chr17_78108936_- | 2.444390e+00 | 1.156380e+00 | 9.260463e-01 | 3.936291e+00 | 8.275048e-05 | 1.046110e-04 | UP |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | ENSG00000204282 | LncEditing_336890 | -3.673152e-01 | 1.577779e-04 | 2.689983e-04 | ENSG00000204282 | LncEditing_336890 | -5.758367e-01 | 1.556358e-02 | 2.889844e-02 | ENSG00000204282 | LncEditing_336890 | -3.304715e-01 | 4.881921e-03 | 6.679528e-03 | ENSG00000204282 | LncEditing_336890 | -4.370366e-01 | 1.395689e-02 | 2.408929e-02 | ENSG00000204282 | LncEditing_336890 | -5.884761e-01 | 4.974788e-04 | 2.354733e-03 |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000204282 | ENSG00000061938 | TNK2 | BLCA,CHOL,COAD,GBM,KIRC,KIRP,LAML,LUAD,LUSC,OV,PAAD,PRAD,THCA,UCEC | | GBM | ENSG00000204282 | ENSG00000067836 | ROGDI | BLCA,GBM,HNSC,LGG,LUAD,UCS | | GBM | ENSG00000204282 | ENSG00000073605 | GSDMB | BLCA,CESC,CHOL,HNSC,KIRC,KIRP,LUAD,LUSC,TGCT,THCA,UCS | THCA | | ENSG00000204282 | ENSG00000105643 | ARRDC2 | BLCA,DLBC,GBM,HNSC,KIRC,KIRP,LAML,LGG,MESO,PAAD,SKCM,THCA | THCA | | ENSG00000204282 | ENSG00000108773 | KAT2A | BLCA,CHOL,DLBC,HNSC,KIRC,LUAD,LUSC,OV,PAAD,THCA,UCS,UVM | BLCA | | ENSG00000204282 | ENSG00000117616 | RSRP1 | BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KIRC,LUAD,LUSC,MESO,OV,PAAD,TGCT,THCA,UCS | BLCA | | ENSG00000204282 | ENSG00000124143 | ARHGAP40 | BLCA,LUAD,OV,UCEC,UCS | BLCA | | ENSG00000204282 | ENSG00000130590 | SAMD10 | BLCA,CHOL,ESCA,HNSC,KIRC,KIRP,LAML,LUAD,LUSC,TGCT,THCA,UCS | BLCA | | ENSG00000204282 | ENSG00000132680 | KHDC4 | BLCA,ESCA,HNSC,KIRC,KIRP,LAML,LUAD,LUSC,PAAD,PRAD,READ,STAD,THCA,THYM | BLCA | | ENSG00000204282 | ENSG00000138834 | MAPK8IP3 | BLCA,CHOL,COAD,DLBC,ESCA,GBM,KIRC,LAML,LUAD,LUSC,MESO,OV,PAAD,PRAD,STAD,THCA,UCS | | GBM | ENSG00000204282 | ENSG00000141524 | TMC6 | BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PRAD,READ,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | BLCA,ESCA,THCA | GBM | ENSG00000204282 | ENSG00000142675 | CNKSR1 | BLCA,LUAD,OV,THCA,UCEC,UCS | BLCA | | ENSG00000204282 | ENSG00000148341 | SH3GLB2 | BLCA,GBM,KIRP,LGG,OV,TGCT,THCA,UCS | | GBM | ENSG00000204282 | ENSG00000148824 | MTG1 | BLCA,BRCA,CHOL,COAD,ESCA,HNSC,KIRC,KIRP,PAAD,STAD,THCA,UCS | BLCA | | ENSG00000204282 | ENSG00000158062 | UBXN11 | BLCA,CHOL,DLBC,HNSC,KIRC,LUAD,PAAD,PRAD,TGCT | BLCA | | ENSG00000204282 | ENSG00000158106 | RHPN1 | BLCA,ESCA,HNSC,OV,THCA,UCS | BLCA,ESCA | | ENSG00000204282 | ENSG00000163013 | FBXO41 | BLCA,CHOL,HNSC,KIRP,LUAD,THCA,UCEC,UCS | BLCA,THCA | | ENSG00000204282 | ENSG00000164855 | TMEM184A | BLCA,KIRP,OV,THCA,UCS | THCA | | ENSG00000204282 | ENSG00000164877 | MICALL2 | BLCA,DLBC,HNSC,KIRC,KIRP,TGCT,THCA | THCA | | ENSG00000204282 | ENSG00000167702 | KIFC2 | BLCA,COAD,KIRC,TGCT,THCA | BLCA | | ENSG00000204282 | ENSG00000167861 | HID1 | BLCA,GBM,LGG,THYM,UCS | BLCA | GBM | ENSG00000204282 | ENSG00000167880 | EVPL | BLCA,LUAD,OV,PRAD,READ,THCA,THYM,UCEC,UCS | THCA | | ENSG00000204282 | ENSG00000175265 | GOLGA8A | BLCA,CHOL,ESCA,HNSC,KIRC,LUAD,LUSC,MESO,OV,PAAD,PRAD,TGCT,UCS,UVM | BLCA | | ENSG00000204282 | ENSG00000185215 | TNFAIP2 | BLCA,CESC,HNSC,KIRC,KIRP,SKCM,TGCT,THYM,UCEC | BLCA | | ENSG00000204282 | ENSG00000187266 | EPOR | BLCA,KIRC,KIRP,LUAD,OV,THCA,UCEC,UCS | THCA | | ENSG00000204282 | ENSG00000187583 | PLEKHN1 | BLCA,KIRP,LUAD,PRAD,THCA | THCA | | ENSG00000204282 | ENSG00000196187 | TMEM63A | BLCA,GBM,LAML,LGG,LUAD,MESO,OV,THCA,THYM,UCS | | GBM | ENSG00000204282 | ENSG00000203772 | SPRN | BLCA,CHOL,COAD,DLBC,HNSC,KIRP | BLCA | | ENSG00000204282 | ENSG00000205517 | RGL3 | BLCA,KIRP,LUAD,OV,THCA,UCEC,UCS | BLCA | | ENSG00000204282 | ENSG00000215252 | GOLGA8B | BLCA,CHOL,ESCA,KIRC,KIRP,LUAD,LUSC,OV,PAAD,PRAD,TGCT,UCS,UVM | BLCA | | ENSG00000204282 | ENSG00000221978 | CCNL2 | BLCA,CHOL,COAD,HNSC,KIRC,KIRP,LUAD,LUSC,MESO,OV,PAAD,PRAD,STAD,TGCT,THCA,UCS | BLCA | | ENSG00000204282 | ENSG00000250067 | YJEFN3 | BLCA,DLBC,ESCA,KIRC,LAML,LUSC,OV,PAAD,UCS | BLCA | | ENSG00000204282 | ENSG00000275023 | MLLT6 | BLCA,CHOL,GBM,HNSC,KIRC,KIRP,LAML,LUAD,LUSC,MESO,PAAD,PRAD,READ,SKCM,TGCT,THCA,THYM,UCS | | GBM | ENSG00000204282 | ENSG00000091490 | SEL1L3 | BRCA,TGCT,THCA,THYM,UCS | THCA | | ENSG00000204282 | ENSG00000105246 | EBI3 | BRCA,CHOL,KIRC,PAAD,PRAD,SKCM,TGCT,THCA | THCA | | ENSG00000204282 | ENSG00000108669 | CYTH1 | BRCA,CHOL,COAD,GBM,HNSC,KIRC,KIRP,LUAD,LUSC,MESO,OV,PAAD,PRAD,SKCM,STAD,TGCT,THYM,UCS | | GBM | ENSG00000204282 | ENSG00000139190 | VAMP1 | BRCA,CHOL,ESCA,GBM,HNSC,KIRC,KIRP,LUAD,LUSC,MESO,PAAD,SKCM | | GBM | ENSG00000204282 | ENSG00000184574 | LPAR5 | BRCA,CHOL,KIRC,KIRP,SKCM,THCA,UCS | THCA | | ENSG00000204282 | ENSG00000187239 | FNBP1 | BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LAML,LGG,PAAD,SKCM,TGCT | | GBM | ENSG00000204282 | ENSG00000187764 | SEMA4D | BRCA,CESC,CHOL,COAD,GBM,HNSC,KIRC,LGG,PAAD,SKCM,STAD | | GBM | ENSG00000204282 | ENSG00000010810 | FYN | CHOL,KIRC,PAAD,TGCT,THCA | THCA | | ENSG00000204282 | ENSG00000011021 | CLCN6 | CHOL,GBM,KIRC,LUAD,PAAD | | GBM | ENSG00000204282 | ENSG00000053702 | NRIP2 | CHOL,DLBC,GBM,KIRC,LGG,PAAD | | GBM | ENSG00000204282 | ENSG00000080822 | CLDND1 | CHOL,GBM,HNSC,LGG,UVM | | GBM | ENSG00000204282 | ENSG00000100068 | LRP5L | CHOL,DLBC,KIRP,LUAD,LUSC,READ,STAD,TGCT,THCA,UCS,UVM | THCA | | ENSG00000204282 | ENSG00000100242 | SUN2 | CHOL,GBM,LGG,MESO,PAAD,TGCT | | GBM | ENSG00000204282 | ENSG00000106100 | NOD1 | CHOL,KIRC,KIRP,PAAD,THCA | THCA | | ENSG00000204282 | ENSG00000107317 | PTGDS | CHOL,GBM,LGG,PAAD,TGCT | | GBM | ENSG00000204282 | ENSG00000108799 | EZH1 | CHOL,DLBC,ESCA,GBM,HNSC,KIRC,LAML,LUAD,LUSC,MESO,PAAD,THCA,UCS | | GBM | ENSG00000204282 | ENSG00000116525 | TRIM62 | CHOL,ESCA,GBM,KIRC,PAAD | | GBM | ENSG00000204282 | ENSG00000116852 | KIF21B | CHOL,GBM,LAML,PAAD,SKCM | | GBM | ENSG00000204282 | ENSG00000129667 | RHBDF2 | CHOL,ESCA,KIRC,KIRP,LUAD,OV,PAAD,PRAD,STAD,TGCT,THYM,UCEC,UCS | ESCA | | ENSG00000204282 | ENSG00000135723 | FHOD1 | CHOL,KIRC,LUAD,PAAD,TGCT,THCA | THCA | | ENSG00000204282 | ENSG00000135905 | DOCK10 | CHOL,GBM,KIRC,MESO,PAAD,STAD,TGCT | | GBM | ENSG00000204282 | ENSG00000148832 | PAOX | CHOL,DLBC,GBM,HNSC,LAML,LGG,PAAD,TGCT,THCA | | GBM | ENSG00000204282 | ENSG00000163644 | PPM1K | CHOL,DLBC,GBM,HNSC,MESO,PAAD | | GBM | ENSG00000204282 | ENSG00000172005 | MAL | CHOL,GBM,LGG,PAAD,TGCT | | GBM | ENSG00000204282 | ENSG00000175567 | UCP2 | CHOL,HNSC,PAAD,SKCM,TGCT,THCA | THCA | | ENSG00000204282 | ENSG00000184584 | STING1 | CHOL,HNSC,KIRP,PAAD,READ,TGCT,THCA | THCA | | ENSG00000204282 | ENSG00000187994 | RINL | CHOL,DLBC,HNSC,PAAD,SKCM,TGCT,THCA,UCEC | THCA | | ENSG00000204282 | ENSG00000189319 | FAM53B | CHOL,DLBC,GBM,HNSC,KIRC,LGG,PAAD | | GBM | ENSG00000204282 | ENSG00000049089 | COL9A2 | DLBC,GBM,HNSC,LGG,MESO | | GBM | ENSG00000204282 | ENSG00000107331 | ABCA2 | DLBC,ESCA,GBM,HNSC,LAML,LGG,UCS | | GBM | ENSG00000204282 | ENSG00000107829 | FBXW4 | DLBC,GBM,LAML,LGG,UCS | | GBM | ENSG00000204282 | ENSG00000163517 | HDAC11 | DLBC,GBM,HNSC,LGG,UCS | | GBM | ENSG00000204282 | ENSG00000167106 | FAM102A | DLBC,GBM,LAML,LGG,THYM | | GBM | ENSG00000204282 | ENSG00000179364 | PACS2 | DLBC,GBM,KIRC,LAML,LGG,LUAD,PRAD,THCA,UCS | | GBM | ENSG00000204282 | ENSG00000203485 | INF2 | DLBC,ESCA,GBM,KIRC,LGG,THCA,UCEC,UCS | THCA | GBM | ENSG00000204282 | ENSG00000204839 | MROH6 | DLBC,KIRC,KIRP,THCA,THYM,UCEC,UCS | THCA | | ENSG00000204282 | ENSG00000107816 | LZTS2 | ESCA,GBM,HNSC,KIRC,LAML,LGG,THCA,UCS,UVM | | GBM | ENSG00000204282 | ENSG00000132471 | WBP2 | ESCA,GBM,TGCT,THCA,THYM,UCS | | GBM | ENSG00000204282 | ENSG00000277363 | SRCIN1 | ESCA,GBM,LGG,LUAD,THCA,UCS | THCA | GBM | ENSG00000204282 | ENSG00000065809 | FAM107B | GBM,LGG,SKCM,TGCT,THYM | | GBM | ENSG00000204282 | ENSG00000070759 | TESK2 | GBM,HNSC,LAML,LGG,PAAD | | GBM | ENSG00000204282 | ENSG00000079337 | RAPGEF3 | GBM,LAML,LGG,THCA,UCS | | GBM | ENSG00000204282 | ENSG00000095397 | WHRN | GBM,HNSC,KIRC,KIRP,LGG,UVM | | GBM | ENSG00000204282 | ENSG00000111344 | RASAL1 | GBM,THCA,THYM,UCEC,UCS | | GBM | ENSG00000204282 | ENSG00000129422 | MTUS1 | GBM,HNSC,LGG,THCA,UCS | THCA | GBM | ENSG00000204282 | ENSG00000144283 | PKP4 | GBM,HNSC,LGG,THCA,UCS | | GBM | ENSG00000204282 | ENSG00000173786 | CNP | GBM,HNSC,LGG,THCA,THYM | | GBM | ENSG00000204282 | ENSG00000197183 | NOL4L | GBM,KIRC,LAML,THCA,UCEC,UCS | | GBM | ENSG00000204282 | ENSG00000211584 | SLC48A1 | GBM,LAML,LGG,TGCT,UCS | | GBM | ENSG00000204282 | ENSG00000004399 | PLXND1 | KIRC,KIRP,LAML,MESO,THCA | THCA | | ENSG00000204282 | ENSG00000007384 | RHBDF1 | KIRC,LAML,LUAD,THCA,UCS | THCA | | ENSG00000204282 | ENSG00000107281 | NPDC1 | KIRC,KIRP,LAML,THCA,UCS,UVM | THCA | | ENSG00000204282 | ENSG00000171680 | PLEKHG5 | KIRC,KIRP,OV,PAAD,THCA,UCS | THCA | | ENSG00000204282 | ENSG00000184916 | JAG2 | KIRC,MESO,THCA,THYM,UCEC | THCA | | ENSG00000204282 | ENSG00000101194 | SLC17A9 | KIRP,LUSC,TGCT,THCA,THYM,UCS | THCA | | ENSG00000204282 | ENSG00000118242 | MREG | KIRP,LAML,TGCT,THCA,UCS | THCA | | ENSG00000204282 | ENSG00000188277 | C15orf62 | KIRP,LAML,LUAD,PAAD,THCA,UCS | THCA | |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000020633 | RUNX3 | 5 | BRCA,CHOL,PAAD,TGCT,THYM | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000020633 | RUNX3 | 5 | BRCA,CHOL,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000020633 | RUNX3 | 5 | KIRC,KIRP,PAAD,PRAD,STAD | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000020633 | RUNX3 | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000125347 | IRF1 | ENSG00000020633 | RUNX3 | 5 | BRCA,CHOL,HNSC,KIRC,KIRP | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000020633 | RUNX3 | 5 | CHOL,HNSC,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000204287 | HLA-DRA | 5 | BRCA,CHOL,PAAD,TGCT,THYM | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000101082 | SLA2 | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000101082 | SLA2 | 6 | CHOL,HNSC,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000177455 | CD19 | 5 | CHOL,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000166432 | ZMAT1 | 5 | CHOL,DLBC,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000087157 | PGS1 | 5 | CHOL,HNSC,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000249115 | HAUS5 | 6 | CHOL,HNSC,KIRC,PAAD,PRAD,THCA | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000249115 | HAUS5 | 5 | CHOL,HNSC,KIRC,PAAD,THCA | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000128191 | DGCR8 | 5 | KIRC,KIRP,LUAD,PRAD,STAD | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000073331 | ALPK1 | 5 | CHOL,ESCA,HNSC,KIRC,PAAD | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000134516 | DOCK2 | 5 | BRCA,CHOL,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000134516 | DOCK2 | 6 | BRCA,CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000134516 | DOCK2 | 5 | CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000196684 | HSH2D | 6 | CHOL,KIRC,KIRP,LUAD,PAAD,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000196684 | HSH2D | 5 | CHOL,PAAD,SKCM,TGCT,THYM | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000196684 | HSH2D | 6 | KIRC,KIRP,LUAD,LUSC,PAAD,STAD | ENSG00000204282 | ENSG00000185507 | IRF7 | ENSG00000196684 | HSH2D | 6 | CHOL,KIRC,KIRP,LUAD,PAAD,TGCT | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000124222 | STX16 | 7 | KIRC,KIRP,LUAD,LUSC,OV,PAAD,PRAD | ENSG00000204282 | ENSG00000173120 | KDM2A | ENSG00000124222 | STX16 | 5 | CHOL,KIRC,KIRP,MESO,PAAD | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000124222 | STX16 | 5 | BLCA,CHOL,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000175463 | TBC1D10C | 5 | CHOL,HNSC,KIRC,KIRP,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000175463 | TBC1D10C | 6 | BRCA,CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000175463 | TBC1D10C | 6 | BRCA,CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000175463 | TBC1D10C | 5 | BRCA,CHOL,KIRC,KIRP,PAAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000175463 | TBC1D10C | 5 | CHOL,DLBC,HNSC,PAAD,TGCT | ENSG00000204282 | ENSG00000125347 | IRF1 | ENSG00000175463 | TBC1D10C | 6 | BRCA,CESC,CHOL,HNSC,KIRC,KIRP | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000126246 | IGFLR1 | 5 | CHOL,KIRC,KIRP,LUAD,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000126246 | IGFLR1 | 5 | CHOL,KIRC,LUAD,SKCM,TGCT | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000163154 | TNFAIP8L2 | 5 | CHOL,HNSC,KIRC,PRAD,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000163154 | TNFAIP8L2 | 6 | BRCA,CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000163154 | TNFAIP8L2 | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000163154 | TNFAIP8L2 | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000125347 | IRF1 | ENSG00000163154 | TNFAIP8L2 | 5 | BRCA,CHOL,HNSC,KIRC,KIRP | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000182179 | UBA7 | 7 | CHOL,HNSC,KIRC,LUAD,PAAD,TGCT,THCA | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000182179 | UBA7 | 7 | BRCA,CHOL,KIRC,LUAD,PAAD,TGCT,THCA | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000182179 | UBA7 | 5 | BRCA,CHOL,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000182179 | UBA7 | 5 | BRCA,KIRC,LUAD,LUSC,PAAD | ENSG00000204282 | ENSG00000125347 | IRF1 | ENSG00000182179 | UBA7 | 5 | BRCA,CESC,CHOL,HNSC,KIRC | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000182179 | UBA7 | 7 | CESC,CHOL,ESCA,HNSC,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000102878 | HSF4 | ENSG00000003756 | RBM5 | 6 | BLCA,COAD,DLBC,HNSC,KIRC,LUSC | ENSG00000204282 | ENSG00000141258 | SGSM2 | ENSG00000003756 | RBM5 | 5 | BLCA,CHOL,HNSC,KIRC,LUAD | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000003756 | RBM5 | 6 | KIRC,LUAD,LUSC,PAAD,PRAD,STAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000003756 | RBM5 | 5 | CHOL,DLBC,HNSC,KIRC,PAAD | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000003756 | RBM5 | 6 | BLCA,CHOL,HNSC,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000116824 | CD2 | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000116824 | CD2 | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000125347 | IRF1 | ENSG00000116824 | CD2 | 6 | BRCA,CESC,CHOL,HNSC,KIRC,KIRP | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000116824 | CD2 | 6 | CHOL,HNSC,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000198917 | SPOUT1 | 5 | CHOL,HNSC,KIRC,KIRP,PAAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000198917 | SPOUT1 | 5 | CHOL,HNSC,KIRC,KIRP,PAAD | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000185291 | IL3RA | 6 | BRCA,CHOL,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000070190 | DAPP1 | 5 | CHOL,PAAD,SKCM,TGCT,THYM | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000070190 | DAPP1 | 6 | CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000070190 | DAPP1 | 5 | CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000140030 | GPR65 | 6 | BRCA,KIRC,PAAD,SKCM,TGCT,THYM | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000140030 | GPR65 | 6 | BRCA,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000130592 | LSP1 | 5 | BRCA,CHOL,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000130592 | LSP1 | 6 | BRCA,CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000130592 | LSP1 | 5 | CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000141258 | SGSM2 | ENSG00000167766 | ZNF83 | 5 | BLCA,CHOL,HNSC,KIRC,LUAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000167766 | ZNF83 | 5 | CHOL,HNSC,KIRC,KIRP,TGCT | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000273559 | CWC25 | 5 | CHOL,HNSC,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000174718 | RESF1 | 5 | CHOL,KIRC,MESO,PAAD,SKCM | ENSG00000204282 | ENSG00000173120 | KDM2A | ENSG00000174718 | RESF1 | 5 | CHOL,KIRC,KIRP,MESO,PAAD | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000105122 | RASAL3 | 7 | CHOL,HNSC,KIRC,KIRP,LUAD,PRAD,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000105122 | RASAL3 | 7 | BRCA,CHOL,KIRC,LUAD,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000105122 | RASAL3 | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000105122 | RASAL3 | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000125347 | IRF1 | ENSG00000105122 | RASAL3 | 6 | BRCA,CESC,CHOL,HNSC,KIRC,KIRP | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000105122 | RASAL3 | 6 | CHOL,HNSC,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000157014 | TATDN2 | 7 | CHOL,HNSC,KIRC,KIRP,PAAD,PRAD,TGCT | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000146826 | TRAPPC14 | 5 | CHOL,DLBC,KIRC,KIRP,PAAD | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000027869 | SH2D2A | 5 | BRCA,CHOL,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000120280 | TASL | 5 | BRCA,PAAD,SKCM,TGCT,THYM | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000120280 | TASL | 6 | BRCA,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000171608 | PIK3CD | 6 | BRCA,CHOL,KIRC,LUAD,PAAD,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000171608 | PIK3CD | 6 | BRCA,CHOL,KIRC,MESO,PAAD,TGCT | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000171608 | PIK3CD | 7 | BRCA,KIRC,KIRP,LUAD,PAAD,PRAD,STAD | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000171608 | PIK3CD | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000102878 | HSF4 | ENSG00000138834 | MAPK8IP3 | 6 | BLCA,COAD,DLBC,ESCA,KIRC,LUSC | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000138834 | MAPK8IP3 | 6 | CHOL,KIRC,LUAD,PAAD,PRAD,THCA | ENSG00000204282 | ENSG00000166888 | STAT6 | ENSG00000138834 | MAPK8IP3 | 5 | BLCA,KIRC,LUSC,OV,PAAD | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000138834 | MAPK8IP3 | 5 | KIRC,LUAD,LUSC,PAAD,PRAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000138834 | MAPK8IP3 | 5 | CHOL,DLBC,KIRC,PAAD,THCA | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000138834 | MAPK8IP3 | 5 | BLCA,CHOL,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000113119 | TMCO6 | 5 | HNSC,KIRC,KIRP,PAAD,THCA | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000167208 | SNX20 | 6 | BRCA,CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000167208 | SNX20 | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000167208 | SNX20 | 6 | CHOL,HNSC,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000102878 | HSF4 | ENSG00000099326 | MZF1 | 5 | BLCA,DLBC,HNSC,KIRC,LUSC | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000099326 | MZF1 | 5 | CHOL,HNSC,KIRC,KIRP,LUAD | ENSG00000204282 | ENSG00000141258 | SGSM2 | ENSG00000099326 | MZF1 | 5 | BLCA,CHOL,HNSC,KIRC,LUAD | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000172613 | RAD9A | 5 | CHOL,HNSC,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000172613 | RAD9A | 5 | CHOL,HNSC,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000172613 | RAD9A | 5 | BLCA,CHOL,HNSC,KIRC,PAAD | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000108622 | ICAM2 | 5 | CHOL,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000188315 | C3orf62 | 5 | CHOL,HNSC,KIRC,TGCT,THCA | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000188315 | C3orf62 | 5 | CHOL,DLBC,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000141258 | SGSM2 | ENSG00000188315 | C3orf62 | 5 | BLCA,CHOL,HNSC,KIRC,LUAD | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000139190 | VAMP1 | 6 | CHOL,HNSC,KIRC,KIRP,LUAD,PAAD | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000139190 | VAMP1 | 5 | KIRC,KIRP,LUAD,LUSC,PAAD | ENSG00000204282 | ENSG00000173120 | KDM2A | ENSG00000139190 | VAMP1 | 6 | CHOL,KIRC,KIRP,LUAD,MESO,PAAD | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000167286 | CD3D | 5 | CHOL,HNSC,KIRC,PRAD,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000167286 | CD3D | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000167286 | CD3D | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000102878 | HSF4 | ENSG00000132680 | KHDC4 | 5 | BLCA,ESCA,HNSC,KIRC,LUSC | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000132680 | KHDC4 | 5 | BLCA,HNSC,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000266173 | STRADA | 6 | KIRC,LUAD,LUSC,OV,PAAD,STAD | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000161405 | IKZF3 | 5 | CHOL,PAAD,SKCM,TGCT,THCA | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000161405 | IKZF3 | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000161405 | IKZF3 | 6 | CHOL,HNSC,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000076928 | ARHGEF1 | 6 | BRCA,CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000076928 | ARHGEF1 | 6 | BRCA,CHOL,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000185507 | IRF7 | ENSG00000076928 | ARHGEF1 | 5 | CHOL,KIRC,KIRP,PAAD,TGCT | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000076928 | ARHGEF1 | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000076928 | ARHGEF1 | 6 | CHOL,DLBC,KIRC,KIRP,PAAD,TGCT | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000076928 | ARHGEF1 | 5 | CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000102878 | HSF4 | ENSG00000185917 | SETD4 | 5 | BLCA,COAD,HNSC,KIRC,LUSC | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000185917 | SETD4 | 5 | BLCA,HNSC,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000177548 | RABEP2 | 5 | CHOL,HNSC,LUAD,PAAD,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000072609 | CHFR | 5 | BRCA,CHOL,KIRC,MESO,PAAD | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000072609 | CHFR | 5 | BRCA,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000068400 | GRIPAP1 | 5 | CHOL,HNSC,KIRC,KIRP,THCA | ENSG00000204282 | ENSG00000141258 | SGSM2 | ENSG00000100083 | GGA1 | 5 | BLCA,CHOL,HNSC,KIRC,LUAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000100083 | GGA1 | 6 | CHOL,HNSC,KIRC,KIRP,PAAD,THCA | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000100083 | GGA1 | 5 | BLCA,CHOL,HNSC,KIRC,PAAD | ENSG00000204282 | ENSG00000102878 | HSF4 | ENSG00000104957 | CCDC130 | 5 | BLCA,DLBC,HNSC,KIRC,LUSC | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000104957 | CCDC130 | 6 | CHOL,HNSC,KIRC,KIRP,LUAD,PAAD | ENSG00000204282 | ENSG00000141258 | SGSM2 | ENSG00000104957 | CCDC130 | 5 | BLCA,CHOL,HNSC,KIRC,LUAD | ENSG00000204282 | ENSG00000185507 | IRF7 | ENSG00000104957 | CCDC130 | 5 | CHOL,KIRC,KIRP,LUAD,PAAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000104957 | CCDC130 | 6 | CHOL,DLBC,HNSC,KIRC,KIRP,PAAD | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000104957 | CCDC130 | 5 | BLCA,CHOL,HNSC,KIRC,PAAD | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000159958 | TNFRSF13C | 5 | CHOL,DLBC,PAAD,SKCM,THYM | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000159958 | TNFRSF13C | 6 | CHOL,DLBC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000141506 | PIK3R5 | 6 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000141506 | PIK3R5 | 5 | BRCA,CHOL,KIRC,KIRP,PAAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000105643 | ARRDC2 | 5 | DLBC,HNSC,KIRP,PAAD,THCA | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000164691 | TAGAP | 5 | BRCA,CHOL,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000164691 | TAGAP | 5 | BRCA,CHOL,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000105443 | CYTH2 | 5 | HNSC,KIRC,LUAD,PRAD,THCA | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000105705 | SUGP1 | 5 | CHOL,HNSC,KIRC,KIRP,THCA | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000105705 | SUGP1 | 6 | CHOL,DLBC,HNSC,KIRC,KIRP,THCA | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000117091 | CD48 | 6 | BRCA,CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000117091 | CD48 | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000117091 | CD48 | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000125347 | IRF1 | ENSG00000117091 | CD48 | 5 | BRCA,CHOL,HNSC,KIRC,KIRP | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000117091 | CD48 | 6 | CHOL,HNSC,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000102878 | HSF4 | ENSG00000163660 | CCNL1 | 5 | BLCA,ESCA,HNSC,KIRC,LUSC | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000163660 | CCNL1 | 5 | BLCA,CHOL,HNSC,KIRC,PAAD | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000116497 | S100PBP | 5 | KIRC,KIRP,PAAD,PRAD,STAD | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000116497 | S100PBP | 5 | CHOL,HNSC,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000197540 | GZMM | 5 | CHOL,HNSC,KIRC,PRAD,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000197540 | GZMM | 5 | BRCA,CHOL,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000197540 | GZMM | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000197540 | GZMM | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000125347 | IRF1 | ENSG00000197540 | GZMM | 5 | BRCA,CHOL,HNSC,KIRC,KIRP | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000003402 | CFLAR | 5 | CESC,CHOL,HNSC,PAAD,SKCM | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000043462 | LCP2 | 5 | BRCA,CHOL,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000043462 | LCP2 | 5 | BRCA,CHOL,KIRC,KIRP,PAAD | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000132274 | TRIM22 | 5 | BRCA,CHOL,PAAD,TGCT,THYM | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000132274 | TRIM22 | 5 | BRCA,CHOL,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000108639 | SYNGR2 | 5 | CHOL,HNSC,KIRP,TGCT,THCA | ENSG00000204282 | ENSG00000102878 | HSF4 | ENSG00000004534 | RBM6 | 5 | BLCA,COAD,HNSC,KIRC,LUSC | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000004534 | RBM6 | 7 | CHOL,HNSC,KIRC,KIRP,LUAD,PAAD,PRAD | ENSG00000204282 | ENSG00000141258 | SGSM2 | ENSG00000004534 | RBM6 | 5 | BLCA,CHOL,HNSC,KIRC,LUAD | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000004534 | RBM6 | 7 | KIRC,KIRP,LUAD,LUSC,OV,PAAD,PRAD | ENSG00000204282 | ENSG00000173120 | KDM2A | ENSG00000004534 | RBM6 | 5 | CHOL,KIRC,KIRP,LUAD,PAAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000004534 | RBM6 | 5 | CHOL,HNSC,KIRC,KIRP,PAAD | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000004534 | RBM6 | 6 | BLCA,CHOL,HNSC,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000186517 | ARHGAP30 | 6 | BRCA,CHOL,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000186517 | ARHGAP30 | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000170581 | STAT2 | ENSG00000186517 | ARHGAP30 | 6 | BRCA,KIRC,KIRP,PAAD,PRAD,STAD | ENSG00000204282 | ENSG00000066336 | SPI1 | ENSG00000186517 | ARHGAP30 | 6 | BRCA,CHOL,KIRC,KIRP,PAAD,PRAD | ENSG00000204282 | ENSG00000125347 | IRF1 | ENSG00000186517 | ARHGAP30 | 6 | BRCA,CESC,CHOL,HNSC,KIRC,KIRP | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000186517 | ARHGAP30 | 6 | CHOL,HNSC,KIRC,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000128604 | IRF5 | ENSG00000124508 | BTN2A2 | 5 | BRCA,CHOL,PAAD,TGCT,THYM | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000124508 | BTN2A2 | 5 | BRCA,CHOL,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000124508 | BTN2A2 | 6 | CHOL,ESCA,HNSC,KIRC,PAAD,TGCT | ENSG00000204282 | ENSG00000126456 | IRF3 | ENSG00000134262 | AP4B1 | 7 | CHOL,HNSC,KIRC,KIRP,LUAD,PAAD,PRAD | ENSG00000204282 | ENSG00000112511 | PHF1 | ENSG00000134262 | AP4B1 | 5 | CHOL,HNSC,KIRC,KIRP,PAAD | ENSG00000204282 | ENSG00000236287 | ZBED5 | ENSG00000134262 | AP4B1 | 5 | CHOL,HNSC,KIRC,PAAD,PRAD | ENSG00000204282 | ENSG00000173120 | KDM2A | ENSG00000198625 | MDM4 | 5 | CHOL,KIRC,KIRP,MESO,PAAD | ENSG00000204282 | ENSG00000140968 | IRF8 | ENSG00000151702 | FLI1 | 7 | BRCA,CHOL,KIRC,MESO,PAAD,SKCM,TGCT | ENSG00000204282 | ENSG00000168310 | IRF2 | ENSG00000151702 | FLI1 | 5 | CHOL,KIRC,PAAD,SKCM,TGCT |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000204282 | ENST00000592939 | P4HB | ENSG00000185624 | ENST00000576390 | -0.5656 | 2252 | GBM | - | ENSG00000204282 | ENST00000592939 | P4HB | ENSG00000185624 | ENST00000439918 | -0.5186 | 2142 | GBM | - | ENSG00000204282 | ENST00000589217 | ADH5 | ENSG00000197894 | ENST00000502590 | -0.1023 | 40 | GBM | - | ENSG00000204282 | ENST00000589217 | P4HB | ENSG00000185624 | ENST00000576390 | -0.2008 | 1033 | GBM | - | ENSG00000204282 | ENST00000589217 | P4HB | ENSG00000185624 | ENST00000439918 | -0.9880 | 1176 | GBM | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000204282.4 | ENST00000592939.1 | 107 | 102 | 425 | ENSG00000204282.4 | ENST00000589217.1 | 124 | 599 | 973 |
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