 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | TMEM250,TIMM21,BLOC1S1,TRMO,NELFB,DOLK,KLHL26,MYO1F,ITGB2,TNFAIP2,HMGCL,CCDC107,GRINA,HDDC3,POMT1,TOM1,NUDT18,CRIP2,SURF4,TIGD5,VASH1,DPM2,SCN1B,DYNC2I2,CDPF1,RRNAD1,CD63,SWI5,APOBR,CACFD1,TMUB1,ICA1,SLC43A2,TRUB2,HINT2,FAM102A,MPDU1,RP11-523H20.5,C9orf64,DPP7,NAGLU,UCP2,AK1,ABCA2,FAM120AOS,IRF2BPL,PHYKPL,ARPC5L,TK2,STK16,LST1,ST3GAL1,APTX,TXLNA,SQSTM1,SURF1,ZER1,CTSA,SPI1,TMEM175,ADAP1,PTGES2,ASB6,BTBD19,TMEM176A,HEXB,GOLGA1,GNG10,SLC66A1,SLC12A7,RALGDS,TMEM8B,PRKACA,CLN5,UBE2D4,TSPAN3,C1orf216,DOK1,KEAP1,SLC66A2,PACS2,B4GALT7,COQ4,GMPPB,WDR45,BRI3,SHC2,PARP12,ERP44,TAZ,CUEDC1,ST6GALNAC6,UQCR11,TMCO4,NPDC1,TMEM176B,OAZ2,CREB3,CYB5D2,FAM174A,ANAPC2,POLD4,CYSTM1,PABIR1,ACP2,TCTA,PTPN3,GLE1,VAMP5,ENDOV,TUBB4B,TOLLIP,GLB1L,SLC2A8,MED27,NFIC,TAPBP,CBY1,EXD3,ACAD10,SLC38A10,EOLA1,P4HTM,ST6GALNAC4,FBXW2,STX5,TMEM129,DGLUCY,PSMB8,WHRN,PIK3IP1,PARP3,GBP2,RHOC,BRF1,ABHD11,B3GALT6,DEAF1,SEC16A,SLC7A7,ATRAID,ANKS3,PGGHG,UCK1,RGL3,GASK1B,TXNRD2,MAPKAP1,TTC7A,PEX11G,VMAC,BAG1,MED22,STOML1,ARPC1B,TLE2,HDHD3,NINJ1,CDC26,FKBP15,AP3S2,CADPS2,MTFR1L,DYNLT1,CXCL16,CCDC96,PSMB10,MRPS2,NDUFA8,ODF3B,CTSZ,NUDT22,MVP,HLA-DPB1,TAPBPL,APOL2,IRAK1,SDF4,ABCC3,THBS3,PLGRKT,TMEM127,TCIRG1,RILP,CCDC159,PARP10,B2M,GAS6,HLA-B,HLA-E,TRIM47,CARD19,IER5L,ARSD,NOL3,BTBD6,UBA7,ORAI3,RABL6,GHDC,UBXN6,MYL5,TMEM51,BCDIN3D,DNASE2,HEXD,TNFRSF14,GAPVD1,C1orf54,LRSAM1,SIL1,TOR2A,TBC1D10A,SMARCD3,CASP1,UBXN11,TMEM104,NACC2,MYRF,PRXL2C,GOLGA2,PMPCA,ALKBH3,XPA,MAF,TSC1,SH3GLB2,TMEM35B,PPP1R26,SLC22A18,FASTK,COLCA2,BRD3,B9D2,USP20,CYB561D2,TMEM187,ABHD8,PTPA,ZDHHC1,FBXO4 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DFNB31,NPDC1,SIL1,ALDH1B1,ABHD11,SLC25A4,PLXNA3,CIB1,PEX11G,RABL6,TRIM47,AAED1,KCTD17,SMPD1,ARSD,WDR45,ENDOG,KEAP1,FBXW2,GNG10,HDHD3,PLGRKT,SLC12A7,TMEM176B,STK16,TAPBP,MED22,RALGDS,RARRES3,HLA-E,GAS6,IRF2BPL,GLB1L,SH3GLB2,SLC7A7,HTATIP2,UBA7,VAMP5,H6PD,UBXN6,ZER1,FAM73B,IL3RA,RGL3,ASB6,ABCA2,FKBP15,UCP2,ALKBH3,TLE2,APOBR,ATRAID,PIK3IP1,TXLNA,B4GALT7,TMEM176A,TMEM8B,PARP10,CADPS2,NANS,ARPC1B,CD63,BRI3,C14orf79,HINT2,DOLK,AGFG2,GADD45G,NOL3,HLA-B,GSTK1,TRMO,SH3BP2,TK2,CUEDC1,MYL5,HDDC3,RALGPS1,UCK1,BLOC1S1,COLCA2,TMCO4,B9D2,PPP1R26,DNASE2,APTX,TRAF5,GPX1,NTMT1,HLA-DPB1,TMEM129,ST3GAL1,GAPVD1,ELAC1,DNASE1L1,GGA1,TAPBPL,VWA5A,C9orf3,BRF1,JUND,TCIRG1,FAM174A,GRINA,POLD4,RILP,BRD3,CXCL16,SLC27A1,ST6GALNAC6,TOR1B,SLC29A3,POMT1,MR1,MUC1,NDUFA8,SCN1B,S100A6,TAZ | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TTF2,MDC1,CEP83,CSNK2A2,NARS2,FAM126B,CCT2,PRRC2A,MARK4,TULP3,DCP2,WDCP,MSH2,SOCS7,JARID2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000204054 | ENST00000412141 | exon_skip_30682 | chr1:151310210-151310255 | -8.24 | -0.1831 | PI4KB | ENST00000368873 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129483776-129483869 | 205.00 | -75.29 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129483860-129483945 | 188.00 | -78.26 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129484641-129484734 | 182.00 | -75.95 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129483672-129483762 | 178.00 | -64.19 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129484289-129484387 | 178.00 | -79.49 | 97 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129483452-129483536 | 173.00 | -89.29 | 80 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129483540-129483633 | 168.00 | -87.85 | 90 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129483950-129484039 | 165.00 | -76.75 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129484194-129484287 | 160.00 | -78.32 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129484486-129484593 | 157.00 | -83.84 | 104 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129484089-129484168 | 145.00 | -74.97 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454968 | chr9:129484380-129484472 | 145.00 | -79.43 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129489354-129489447 | 205.00 | -75.29 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129489200-129489305 | 192.00 | -70.45 | 102 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129489438-129489523 | 188.00 | -78.26 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129490219-129490312 | 182.00 | -75.95 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129489867-129489965 | 178.00 | -79.49 | 97 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129488789-129488876 | 170.00 | -93.93 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129489014-129489109 | 169.00 | -71.13 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129489528-129489617 | 165.00 | -76.75 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129489772-129489865 | 160.00 | -78.32 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129490064-129490171 | 157.00 | -83.84 | 104 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129488684-129488775 | 154.00 | -92.95 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129489667-129489746 | 145.00 | -74.97 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129489958-129490050 | 145.00 | -79.43 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000444184 | chr9:129488886-129488984 | 143.00 | -72.28 | 97 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608369 | chr9:129489639-129489732 | 205.00 | -75.29 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608369 | chr9:129489723-129489808 | 188.00 | -78.26 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608369 | chr9:129489423-129489523 | 179.00 | -73.75 | 99 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608369 | chr9:129489014-129489109 | 169.00 | -71.13 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608369 | chr9:129489317-129489409 | 164.00 | -88.53 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608369 | chr9:129489527-129489608 | 154.00 | -77.37 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608369 | chr9:129489143-129489220 | 150.00 | -65.93 | 79 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608369 | chr9:129488916-129489010 | 143.00 | -76.28 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129494026-129494112 | 225.00 | -65.28 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129493275-129493366 | 214.00 | -72.12 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129493433-129493523 | 212.00 | -68.03 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129491456-129491542 | 206.00 | -87.13 | 80 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129494806-129494909 | 202.00 | -79.50 | 100 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129494635-129494729 | 199.00 | -77.71 | 94 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129490939-129491023 | 193.00 | -70.72 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129491732-129491826 | 188.00 | -87.43 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129495676-129495758 | 188.00 | -63.18 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129497133-129497238 | 188.00 | -76.14 | 100 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129489308-129489399 | 186.00 | -72.71 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129496597-129496681 | 185.00 | -72.56 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129496253-129496348 | 184.00 | -67.83 | 94 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129490039-129490132 | 182.00 | -75.95 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129495950-129496030 | 181.00 | -64.74 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129489200-129489305 | 180.00 | -68.38 | 103 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129489687-129489785 | 178.00 | -79.49 | 97 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129494188-129494289 | 174.00 | -72.17 | 99 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129491890-129491980 | 172.00 | -70.77 | 90 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129496754-129496839 | 172.00 | -72.27 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129491612-129491700 | 171.00 | -91.10 | 85 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129495403-129495495 | 170.00 | -72.47 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129495763-129495851 | 170.00 | -74.05 | 90 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129490775-129490874 | 169.00 | -59.78 | 98 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129494950-129495036 | 169.00 | -84.59 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129495165-129495244 | 169.00 | -54.31 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129493925-129494019 | 168.00 | -65.90 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129490257-129490350 | 167.00 | -85.34 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129491094-129491187 | 167.00 | -80.15 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129497639-129497739 | 166.00 | -82.75 | 100 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129498144-129498240 | 165.00 | -77.20 | 91 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129492157-129492250 | 163.00 | -68.83 | 91 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129498244-129498329 | 163.00 | -75.86 | 78 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129494399-129494481 | 162.00 | -64.04 | 80 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129496499-129496580 | 162.00 | -65.17 | 85 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129489592-129489685 | 160.00 | -78.32 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129497977-129498066 | 160.00 | -68.41 | 83 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129491194-129491275 | 158.00 | -81.19 | 84 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129489884-129489991 | 157.00 | -83.84 | 104 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129492938-129493022 | 157.00 | -71.67 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129494505-129494590 | 157.00 | -81.36 | 79 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129496055-129496155 | 157.00 | -83.45 | 97 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129492058-129492159 | 156.00 | -76.03 | 94 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129497423-129497514 | 156.00 | -62.94 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129497853-129497947 | 156.00 | -71.01 | 90 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129498370-129498455 | 156.00 | -69.30 | 84 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129492610-129492719 | 155.00 | -79.20 | 107 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129493111-129493207 | 155.00 | -82.14 | 96 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129497251-129497343 | 153.00 | -83.91 | 91 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129491281-129491379 | 151.00 | -84.31 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129490571-129490659 | 149.00 | -73.80 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129495276-129495360 | 149.00 | -56.53 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129496674-129496757 | 149.00 | -72.50 | 64 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129493759-129493863 | 148.00 | -76.38 | 102 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129492451-129492536 | 147.00 | -66.64 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129489487-129489566 | 145.00 | -74.97 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129489778-129489870 | 145.00 | -79.43 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129492794-129492878 | 145.00 | -70.84 | 80 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129493521-129493611 | 145.00 | -74.98 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129497754-129497847 | 145.00 | -75.07 | 94 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129491372-129491463 | 143.00 | -81.67 | 90 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129496355-129496440 | 143.00 | -66.80 | 85 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129492318-129492412 | 142.00 | -68.68 | 94 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129489101-129489173 | 140.00 | -69.48 | 76 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129495542-129495628 | 140.00 | -65.56 | 85 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000419300 | chr9:129497529-129497624 | 140.00 | -82.93 | 94 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129489298-129489385 | 200.00 | -75.29 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129490083-129490166 | 197.00 | -70.64 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129490169-129490260 | 186.00 | -72.71 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129490489-129490574 | 176.00 | -71.04 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129489900-129489984 | 162.00 | -71.92 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129489984-129490074 | 156.00 | -84.98 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129489200-129489305 | 152.00 | -69.18 | 100 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129489579-129489667 | 152.00 | -64.64 | 78 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129489381-129489479 | 151.00 | -92.64 | 101 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129490394-129490487 | 151.00 | -72.22 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129490272-129490359 | 144.00 | -76.73 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000423918 | chr9:129490606-129490696 | 143.00 | -58.24 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454635 | chr9:129491180-129491273 | 205.00 | -75.29 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454635 | chr9:129491437-129491528 | 186.00 | -72.71 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454635 | chr9:129490967-129491067 | 179.00 | -73.75 | 99 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454635 | chr9:129490861-129490953 | 164.00 | -88.53 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454635 | chr9:129491071-129491166 | 154.00 | -74.41 | 96 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454635 | chr9:129491269-129491367 | 151.00 | -92.64 | 101 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000454635 | chr9:129491616-129491695 | 145.00 | -74.97 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000625171 | chr9:129491180-129491273 | 205.00 | -75.29 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000625171 | chr9:129491264-129491349 | 188.00 | -78.26 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000625171 | chr9:129491634-129491719 | 176.00 | -71.04 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000625171 | chr9:129490993-129491067 | 165.00 | -63.05 | 75 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000625171 | chr9:129491354-129491443 | 165.00 | -76.75 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000625171 | chr9:129491071-129491166 | 154.00 | -74.41 | 96 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000625171 | chr9:129491539-129491632 | 151.00 | -72.22 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000625171 | chr9:129491447-129491532 | 140.00 | -73.23 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624138 | chr9:129491127-129491214 | 200.00 | -75.29 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624138 | chr9:129491205-129491290 | 188.00 | -78.26 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624009 | chr9:129491180-129491273 | 205.00 | -75.29 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624009 | chr9:129491657-129491739 | 162.00 | -64.04 | 80 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624009 | chr9:129491467-129491555 | 152.00 | -64.64 | 78 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624009 | chr9:129491269-129491367 | 151.00 | -92.64 | 101 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624009 | chr9:129491090-129491166 | 146.00 | -58.76 | 80 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622972 | chr9:129491199-129491283 | 193.00 | -69.27 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622972 | chr9:129491376-129491466 | 143.00 | -58.24 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624390 | chr9:129491180-129491273 | 205.00 | -75.29 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624390 | chr9:129491294-129491369 | 170.00 | -69.66 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624390 | chr9:129491090-129491166 | 146.00 | -58.76 | 80 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624390 | chr9:129491401-129491491 | 143.00 | -58.24 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624884 | chr9:129491129-129491192 | 150.00 | -64.37 | 67 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000624884 | chr9:129491224-129491314 | 143.00 | -58.24 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622680 | chr9:129493470-129493563 | 205.00 | -75.29 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622680 | chr9:129493554-129493639 | 188.00 | -78.26 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622680 | chr9:129493212-129493290 | 181.00 | -73.69 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622680 | chr9:129493119-129493212 | 174.00 | -75.71 | 71 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622680 | chr9:129493342-129493439 | 170.00 | -65.96 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622680 | chr9:129493644-129493733 | 165.00 | -76.75 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622680 | chr9:129493737-129493822 | 140.00 | -73.23 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000623185 | chr9:129494016-129494100 | 193.00 | -69.27 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000623185 | chr9:129493604-129493695 | 186.00 | -72.71 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000623185 | chr9:129493888-129493988 | 176.00 | -89.52 | 99 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000623185 | chr9:129493783-129493862 | 145.00 | -74.97 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000623185 | chr9:129494193-129494283 | 143.00 | -58.24 | 92 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000623185 | chr9:129494281-129494363 | 141.00 | -56.55 | 85 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000607931 | chr9:129495451-129495537 | 176.00 | -72.62 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000607931 | chr9:129495614-129495705 | 157.00 | -65.46 | 91 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000607931 | chr9:129495734-129495817 | 145.00 | -62.88 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622120 | chr9:129496097-129496188 | 186.00 | -72.71 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622120 | chr9:129496010-129496094 | 152.00 | -78.42 | 85 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000622120 | chr9:129496276-129496355 | 145.00 | -74.97 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608272 | chr9:129496924-129496958 | 159.00 | -55.64 | 27 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608272 | chr9:129497235-129497323 | 152.00 | -64.64 | 78 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608272 | chr9:129497012-129497099 | 150.00 | -62.70 | 82 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608272 | chr9:129497102-129497185 | 145.00 | -62.88 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000453213 | chr9:129498473-129498564 | 186.00 | -72.71 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000453213 | chr9:129498340-129498419 | 156.00 | -68.10 | 84 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000453213 | chr9:129498698-129498791 | 151.00 | -72.22 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000453213 | chr9:129498576-129498663 | 144.00 | -76.73 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608669 | chr9:129502353-129502437 | 174.00 | -70.59 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608669 | chr9:129502073-129502128 | 165.00 | -63.89 | 61 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608669 | chr9:129502184-129502266 | 161.00 | -70.42 | 87 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000608669 | chr9:129502260-129502350 | 141.00 | -80.84 | 86 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000412141 | chr9:129503062-129503145 | 197.00 | -70.64 | 89 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000412141 | chr9:129503560-129503644 | 193.00 | -69.27 | 88 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000412141 | chr9:129503148-129503239 | 186.00 | -72.71 | 93 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000412141 | chr9:129503432-129503532 | 176.00 | -89.52 | 99 | NA | | ENSG00000204054 | hsa-mir-130a | ENST00000412141 | chr9:129503327-129503406 | 145.00 | -74.97 | 86 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000204054 | LINC00963,hsa-mir-130a,DPP3 | KICH,CHOL,UVM,GBM,THYM | | ENSG00000204054 | LINC00963,hsa-mir-130a,CD9 | KICH,CHOL,UVM,GBM,SARC,THYM | | ENSG00000204054 | LINC00963,hsa-mir-130a,HTATIP2 | KICH,CHOL,UVM,GBM,SARC,THYM | | ENSG00000204054 | LINC00963,hsa-mir-130a,DNAJA3 | KICH,CHOL,UVM,SARC,THYM | | ENSG00000204054 | LINC00963,hsa-mir-130a,TPPP | KICH,CHOL,UVM,GBM,SARC |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000204054.10 | ENST00000454968.4 | 141 | 840 | 1265 | | ENSG00000204054.10 | ENST00000444184.4 | 101 | 998 | 693 | | ENSG00000204054.10 | ENST00000608369.1 | 153 | 84 | 545 | | ENSG00000204054.10 | ENST00000419300.3 | 121 | 262 | 627 | | ENSG00000204054.10 | ENST00000423918.4 | 207 | 2474 | 3097 | | ENSG00000204054.10 | ENST00000454635.5 | 124 | 839 | 1213 | | ENSG00000204054.10 | ENST00000625171.2 | 84 | 345 | 599 | | ENSG00000204054.10 | ENST00000624138.2 | 96 | 661 | 371 | | ENSG00000204054.10 | ENST00000624009.2 | 64 | 230 | 36 | | ENSG00000204054.10 | ENST00000622972.2 | 84 | 75 | 329 | | ENSG00000204054.10 | ENST00000624390.1 | 73 | 220 | 2 | | ENSG00000204054.10 | ENST00000624884.1 | 57 | 75 | 248 | | ENSG00000204054.10 | ENST00000622680.1 | 37 | 56 | 169 | | ENSG00000204054.10 | ENST00000623185.2 | 77 | 388 | 621 | | ENSG00000204054.10 | ENST00000607931.1 | 134 | 197 | 601 | | ENSG00000204054.10 | ENST00000622120.1 | 83 | 122 | 373 | | ENSG00000204054.10 | ENST00000608272.1 | 68 | 343 | 137 | | ENSG00000204054.10 | ENST00000453213.1 | 75 | 36 | 263 | | ENSG00000204054.10 | ENST00000608669.1 | 94 | 467 | 183 | | ENSG00000204054.10 | ENST00000412141.1 | 118 | 175 | 528 |
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