lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | SLIRP,GLI4,THAP4,MYPOP,IRF3,DDX56,IMP3,TIGD5,OVOL2,TFEB,CXXC5,RPP25,CENPB,SNRPA,LSM3,LSM5,EIF3G,ZGLP1,DBP,LSM4,CREB3,ERAL1,ZBTB3,CWC15,CPSF4,PPIE,NELFE,USF1,CXXC1,PHF1,THYN1,DEAF1,DDX49,HSF4,THOC6,RBM42,ZNF48,REXO4,PCBP4,THAP3,MESP1,PREB,ETV2,HMGN3,NOL3,NR1H3,THAP8,LSM2,PIN1,RRP7A,NAIF1,DDX41,XPA,THOC7,USF2,RALY | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | GLI4,CENPB,RPP25,ETV2,OVOL2,EIF3G,E4F1,THAP4,THAP7,USF1,USF2,THAP3,SRP14,LSM2,NOL3,CXXC1,RBMX2,RBM42,TFEB,CWC15,ZNF48,HSF4,RRP7A,DDIT3,THOC7 | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
Only predicted by TDF | E2F5,GMEB1,BAZ2A,SMAD1,SF3A1,REST,PPIL4,FOSL2,RORA,DDX52,ATF1,MBNL1,ZFR,ZFX,LCOR,MYNN,BACH1,TET2,NR2C2,DDX60,AGO4,CPSF2,CELF1,ASCC1,STAU1,AGO1,DOT1L,ZNF45,DDX46,DNMT1,NFX1,ZFP30,TEP1,AKAP1,ELF1,MLXIP,UBR5,CNOT6,GTF2I,TFCP2,TERF1,CPSF7,PATL1,FOXK1,ZFP3,FOXJ2,ZBTB6,DDX1 | Exist in public source | NA |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | UBR5,SMAD1,GMEB1,E2F5,SON,AGFG1,NFAT5,QKI,ZFP28,PPRC1,HBP1,FUBP1,AEBP2,ZEB1,ZBED6,ASCC1,RORA,BBX,CPEB4,TEP1,ASH1L,FXR1,SATB1,RBMX,ELF1,MLXIP,DCP2,ZNF28,PHF20,AGO3,FOXN3,FOXJ3,PPARA,G3BP1,CPEB2,ARNT,PNPT1,TFCP2,EEA1,SCAF4,XRN1,NFKB1,RBM28,CPSF6,SF3A1,AKAP1,DMTF1,KLF7,MYC,DNMT1,DDX6,SUGP2,ADNP2,MAFK,KAT7,ATF2,ATF1,NCOA2,FOXK1,CELF1,DDX60,KMT2A,DDX3X,GLYR1,PUM1,DDX55,NR2C2,SKIL,SYNJ1,FOXN2,RBM7 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000197180 | ENST00000360656 | exon_skip_430434 | chr4:82356536-82356683 | -9.88 | -0.1176 | HNRNPD | ENST00000313899 | In-frame | ENSG00000197180 | ENST00000360656 | exon_skip_90104 | chr12:10709907-10710114 | -25.08 | -0.1293 | YBX3 | ENST00000228251 | In-frame | ENSG00000197180 | ENST00000360656 | exon_skip_97655 | chr12:120579773-120579923 | -11.33 | -0.1953 | POP5 | ENST00000357500 | In-frame | ENSG00000197180 | ENST00000360656 | exon_skip_445390 | chr5:150403120-150403312 | -23.24 | -0.1236 | CD74 | ENST00000009530 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000197180.2 | ENST00000360656.2 | 155 | 1004 | 1471 |
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