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lncRNA: ENSG00000196972 |
Summary for LINC00087 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000196972 | Gene symbol | LINC00087 |
| Gene name | ||
| HGNC | ||
| Entrez ID | 644596 | |
| Gene type | lincRNA | |
| Synonyms | ||
| UniProtAcc |
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Structure and expression level for LINC00087 |
| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000196972 | 2.880259e+02 | -4.201052e+00 | 4.554779e-01 | -9.223392e+00 | 2.880000e-20 | 2.800000e-18 | DOWN | GBM |
| ENSG00000196972 | 1.657271e+02 | -1.122070e+00 | 1.052175e-01 | -1.066429e+01 | 1.500000e-26 | 3.510000e-25 | DOWN | THCA |
| ENSG00000196972 | 2.080529e+02 | -1.476989e+00 | 1.477553e-01 | -9.996183e+00 | 1.580000e-23 | 1.150000e-22 | DOWN | KIRC |
| ENSG00000196972 | 1.633325e+03 | 2.070392e+00 | 2.265999e-01 | 9.136774e+00 | 6.430000e-20 | 1.040000e-18 | UP | KICH |
| ENSG00000196972 | 1.591774e+02 | -1.939505e+00 | 1.968984e-01 | -9.850283e+00 | 6.840000e-23 | 2.220000e-21 | DOWN | KIRP |
| ENSG00000196972 | 1.980814e+02 | -1.115568e+00 | 1.456035e-01 | -7.661688e+00 | 1.840000e-14 | 2.240000e-13 | DOWN | PRAD |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000196972 | -3.468138e-01 | 2.001477e-03 | ACC | 9.245919e-03 |
| ENSG00000196972 | 4.846651e-01 | 1.487822e-06 | KICH | 4.024110e-06 |
| ENSG00000196972 | -4.502969e-01 | 1.082785e-31 | KIRC | 5.732390e-30 |
| ENSG00000196972 | -3.481740e-01 | 9.564004e-10 | KIRP | 1.025194e-08 |
| ENSG00000196972 | -3.314346e-01 | 1.358907e-15 | PRAD | 1.224263e-14 |
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lncRNA-Protein interaction for LINC00087 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000196972 | ENST00000433425 | LINC00087 | ENSG00000169057 | MECP2 | 45.16 | 91.13 | P51608 | TF,Epi | NA |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000196972 | ENST00000433425 | LINC00087 | ENSG00000169057 | MECP2 | 45.16 | 91.2598 | P51608 | TF,Epi | NA |
| ENSG00000196972 | ENST00000433425 | LINC00087 | ENSG00000114126 | TFDP2 | 5.71 | 90.332 | Q14188 | TF | NA |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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