 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | FCGR2A | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000188242 | ENST00000502511 | exon_skip_60345 | chr11:63903985-63904147 | -25.76 | -0.1853 | MARK2 | ENST00000402010 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000188242 | ENST00000502511 | exon_skip_436498 | chr5:96729152-96729209 | -5.80 | -0.1055 | CAST | ENST00000341926,ENST00000395813 | In-frame |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000188242 | hsa-mir-21 | ENST00000510714 | chr5:466161-466240 | 160.00 | -82.52 | 71 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000510714 | chr5:466380-466449 | 160.00 | -70.66 | 72 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000510714 | chr5:466287-466364 | 157.00 | -58.32 | 70 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000510714 | chr5:466456-466528 | 147.00 | -78.03 | 71 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:471755-471822 | 162.00 | -60.00 | 67 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:470769-470848 | 160.00 | -82.52 | 71 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:471503-471575 | 160.00 | -67.96 | 68 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:471294-471372 | 159.00 | -85.86 | 78 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:471032-471105 | 158.00 | -58.51 | 72 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:471612-471692 | 158.00 | -62.31 | 79 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:471866-471938 | 157.00 | -73.94 | 70 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:472287-472360 | 153.00 | -64.90 | 67 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:471214-471285 | 152.00 | -55.34 | 71 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000342584 | chr5:470882-470955 | 147.00 | -68.62 | 74 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000510604 | chr5:471368-471447 | 160.00 | -82.52 | 71 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000510604 | chr5:471960-472032 | 160.00 | -67.96 | 68 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000510604 | chr5:471751-471829 | 159.00 | -85.86 | 78 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000510604 | chr5:471671-471742 | 152.00 | -55.34 | 71 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000510604 | chr5:471494-471562 | 151.00 | -60.98 | 67 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000510604 | chr5:472032-472106 | 145.00 | -66.78 | 72 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000502511 | chr5:472297-472368 | 168.00 | -71.78 | 70 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000502511 | chr5:472211-472283 | 157.00 | -80.75 | 68 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000502511 | chr5:472124-472196 | 151.00 | -76.65 | 72 | NA | | ENSG00000188242 | hsa-mir-21 | ENST00000502511 | chr5:472585-472657 | 140.00 | -71.27 | 65 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000188242 | ENST00000510714 | FCGR2A | ENSG00000143226 | ENST00000536731 | -0.1628 | 6 | KIRC,KIRP,ESCA | LUSC | | ENSG00000188242 | ENST00000342584 | FCGR2A | ENSG00000143226 | ENST00000536731 | -0.2281 | 738 | KIRC,KIRP,ESCA | LUSC | | ENSG00000188242 | ENST00000510604 | FCGR2A | ENSG00000143226 | ENST00000536731 | -0.2281 | 458 | KIRC,KIRP,ESCA | LUSC | | ENSG00000188242 | ENST00000502511 | FCGR2A | ENSG00000143226 | ENST00000536731 | -0.1724 | 12 | KIRC,KIRP,ESCA | LUSC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000188242.4 | ENST00000510714.1 | 200 | 78 | 680 | | ENSG00000188242.4 | ENST00000342584.3 | 96 | 578 | 288 | | ENSG00000188242.4 | ENST00000510604.1 | 182 | 1253 | 705 | | ENSG00000188242.4 | ENST00000502511.1 | 129 | 814 | 425 |
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