 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | MCTS1,THAP4,NELFE,LSM3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000188185 | ENST00000448955 | exon_skip_150854 | chr17:32366664-32366757 | -9.84 | -0.1118 | ZNF207 | ENST00000321233 | In-frame | | ENSG00000188185 | ENST00000448955 | exon_skip_462554 | chr6:136267028-136267175 | -12.15 | -0.1240 | BCLAF1 | ENST00000531224 | In-frame | | ENSG00000188185 | ENST00000448955 | exon_skip_29546 | chr1:114737470-114737563 | -12.14 | -0.1897 | CSDE1 | ENST00000358528,ENST00000534699 | In-frame | | ENSG00000188185 | ENST00000448955 | exon_skip_140277 | chr16:635280-635340 | -10.75 | -0.2389 | METTL26 | ENST00000301686 | In-frame | | ENSG00000188185 | ENST00000448955 | exon_skip_309996 | chr19:49670215-49670488 | -28.63 | -0.1080 | BCL2L12 | ENST00000246785 | In-frame | | ENSG00000188185 | ENST00000448955 | exon_skip_371367 | chr3:9697710-9697866 | -21.25 | -0.1436 | MTMR14 | ENST00000296003 | In-frame | | ENSG00000188185 | ENST00000340510 | exon_skip_430434 | chr4:82356536-82356683 | -11.93 | -0.2251 | HNRNPD | ENST00000313899 | In-frame | | ENSG00000188185 | ENST00000340510 | exon_skip_426982 | chr4:163515312-163515461 | -19.70 | -0.1527 | TMA16 | ENST00000358572 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000188185 | ENST00000448955 | exon_skip_66482 | chr11:126274926-126275021 | -12.39 | -0.1441 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000188185 | ENST00000448955 | exon_skip_133217 | chr16:8635038-8635079 | -8.27 | -0.2584 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000188185 | ENST00000448955 | exon_skip_302168 | chr19:10680345-10680443 | -10.62 | -0.1180 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000188185 | ENST00000448955 | exon_skip_382458 | chr3:38131595-38131638 | -8.77 | -0.2249 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000188185 | ENST00000448955 | exon_skip_340759 | chr2:85552415-85552567 | -14.98 | -0.1012 | GGCX | ENST00000233838 | Frame-shift | | ENSG00000188185 | ENST00000448955 | exon_skip_290158 | chr17:42953723-42953778 | -7.14 | -0.1552 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000188185 | ENST00000448955 | exon_skip_370518 | chr22:50247691-50247776 | -13.52 | -0.2253 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000188185 | ENST00000448955 | exon_skip_470226 | chr7:103307595-103307708 | -12.29 | -0.7229 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000188185 | ENST00000448955 | exon_skip_377198 | chr3:123130479-123130616 | -17.30 | -0.1430 | PDIA5 | ENST00000316218 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39736336-39736428 | 211.00 | -92.16 | 95 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39733731-39733823 | 193.00 | -78.95 | 96 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39734603-39734708 | 183.00 | -89.81 | 103 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39735584-39735677 | 181.00 | -87.46 | 95 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39734529-39734615 | 180.00 | -77.80 | 95 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39734281-39734369 | 174.00 | -72.63 | 95 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39734416-39734502 | 173.00 | -77.21 | 91 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39733633-39733721 | 172.00 | -80.74 | 88 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39736242-39736333 | 172.00 | -74.04 | 94 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39734785-39734882 | 171.00 | -81.42 | 97 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39735703-39735794 | 168.00 | -83.10 | 92 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39734949-39735045 | 166.00 | -84.80 | 97 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39735281-39735379 | 166.00 | -67.23 | 79 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39734056-39734149 | 164.00 | -75.17 | 94 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39734696-39734782 | 164.00 | -74.51 | 90 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39735049-39735157 | 164.00 | -89.76 | 106 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39735979-39736070 | 162.00 | -76.75 | 90 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39736116-39736212 | 161.00 | -78.74 | 85 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39735186-39735291 | 160.00 | -82.78 | 103 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39734139-39734238 | 159.00 | -73.24 | 104 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39735386-39735494 | 159.00 | -88.12 | 104 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39736497-39736596 | 159.00 | -72.10 | 92 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39733871-39733974 | 158.00 | -69.05 | 90 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000340510 | chr7:39735852-39735949 | 152.00 | -95.13 | 92 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000448955 | chr7:39781776-39781873 | 171.00 | -81.42 | 97 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000448955 | chr7:39781951-39782047 | 166.00 | -84.80 | 97 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000448955 | chr7:39782051-39782157 | 164.00 | -89.67 | 106 | NA | | ENSG00000188185 | hsa-mir-455 | ENST00000448955 | chr7:39781690-39781773 | 163.00 | -74.03 | 72 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_181419 | ENSG00000188185.10 | chr7 | 39792013 | + | lincRNA | LINC00265 | ENST00000340510.7 | lincRNA | LINC00265-001 | | LncEditing_181422 | ENSG00000188185.10 | chr7 | 39792897 | + | lincRNA | LINC00265 | ENST00000340510.7 | lincRNA | LINC00265-001 | | LncEditing_181424 | ENSG00000188185.10 | chr7 | 39792925 | + | lincRNA | LINC00265 | ENST00000340510.7 | lincRNA | LINC00265-001 | | LncEditing_181429 | ENSG00000188185.10 | chr7 | 39792937 | + | lincRNA | LINC00265 | ENST00000340510.7 | lincRNA | LINC00265-001 | | LncEditing_181432 | ENSG00000188185.10 | chr7 | 39793004 | + | lincRNA | LINC00265 | ENST00000340510.7 | lincRNA | LINC00265-001 | | LncEditing_181433 | ENSG00000188185.10 | chr7 | 39793042 | + | lincRNA | LINC00265 | ENST00000340510.7 | lincRNA | LINC00265-001 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000188185 | LncEditing_181429 | UCS | chr7_39792937_+ | 2.098035e+00 | 1.270518e+00 | 1.381937e+00 | 3.919618e+00 | 8.868944e-05 | 3.867272e-04 | UP | | ENSG00000188185 | LncEditing_181429 | KIRC | chr7_39792937_+ | 2.236350e+00 | 1.106605e+00 | 9.852158e-01 | 9.449366e+00 | 3.408898e-21 | 8.556796e-21 | UP | | ENSG00000188185 | LncEditing_181419 | GBM | chr7_39792013_+ | 4.336462e+00 | 2.920345e+00 | 1.753218e+00 | 4.386508e+00 | 1.151851e-05 | 1.909524e-05 | UP | | ENSG00000188185 | LncEditing_181422 | GBM | chr7_39792897_+ | 4.610548e+00 | 2.555280e+00 | 1.174458e+00 | 6.013841e+00 | 1.811786e-09 | 6.007109e-09 | UP | | ENSG00000188185 | LncEditing_181429 | GBM | chr7_39792937_+ | 4.345994e+00 | 2.125246e+00 | 9.689392e-01 | 7.754307e+00 | 8.882740e-15 | 1.409046e-13 | UP | | ENSG00000188185 | LncEditing_181433 | GBM | chr7_39793042_+ | 5.733871e+00 | 2.630882e+00 | 8.897090e-01 | 5.900103e+00 | 3.632750e-09 | 1.100710e-08 | UP | | ENSG00000188185 | LncEditing_181429 | MESO | chr7_39792937_+ | 2.029002e+00 | 9.906474e-01 | 9.668127e-01 | 3.308318e+00 | 9.385822e-04 | 1.496918e-03 | UP | | ENSG00000188185 | LncEditing_181429 | UVM | chr7_39792937_+ | 2.521593e+00 | 1.320311e+00 | 1.071286e+00 | 3.853622e+00 | 1.163834e-04 | 2.499713e-04 | UP | | ENSG00000188185 | LncEditing_181429 | BLCA | chr7_39792937_+ | 2.757145e+00 | 1.379095e+00 | 1.000547e+00 | 7.393233e+00 | 1.433014e-13 | 3.118237e-13 | UP | | ENSG00000188185 | LncEditing_181419 | LGG | chr7_39792013_+ | 3.132010e+00 | 2.390887e+00 | 2.567112e+00 | 6.335632e+00 | 2.363704e-10 | 3.543046e-10 | UP | | ENSG00000188185 | LncEditing_181429 | LGG | chr7_39792937_+ | 3.130912e+00 | 2.055973e+00 | 1.648094e+00 | 1.035589e+01 | 3.935214e-25 | 1.587578e-24 | UP | | ENSG00000188185 | LncEditing_181429 | ACC | chr7_39792937_+ | 2.530252e+00 | 1.727437e+00 | 1.816043e+00 | 3.032453e+00 | 2.425752e-03 | 3.674512e-03 | UP | | ENSG00000188185 | LncEditing_181429 | COAD | chr7_39792937_+ | 3.927842e+00 | 1.899173e+00 | 9.538657e-01 | 9.523915e+00 | 1.667750e-21 | 6.965310e-21 | UP | | ENSG00000188185 | LncEditing_181429 | LUSC | chr7_39792937_+ | 2.712923e+00 | 1.481536e+00 | 1.145797e+00 | 9.450848e+00 | 3.360964e-21 | 1.024143e-20 | UP | | ENSG00000188185 | LncEditing_181422 | KICH | chr7_39792897_+ | 1.102330e+01 | 8.546013e+00 | 2.723067e+00 | 2.149493e+00 | 3.159533e-02 | 3.451980e-02 | UP | | ENSG00000188185 | LncEditing_181433 | KICH | chr7_39793042_+ | 1.255975e+01 | 7.350728e+00 | 1.293915e+00 | 4.211807e+00 | 2.533359e-05 | 1.028101e-04 | UP | | ENSG00000188185 | LncEditing_181429 | SKCM | chr7_39792937_+ | 3.172503e+00 | 1.543180e+00 | 9.618019e-01 | 1.148207e+01 | 1.623447e-30 | 1.047820e-29 | UP | | ENSG00000188185 | LncEditing_181419 | PCPG | chr7_39792013_+ | 2.684220e+00 | 1.743369e+00 | 1.606102e+00 | 4.209765e+00 | 2.556370e-05 | 4.254780e-05 | UP | | ENSG00000188185 | LncEditing_181429 | PCPG | chr7_39792937_+ | 2.435396e+00 | 1.268713e+00 | 1.062936e+00 | 8.259694e+00 | 1.460466e-16 | 3.379936e-15 | UP | | ENSG00000188185 | LncEditing_181429 | KIRP | chr7_39792937_+ | 2.492130e+00 | 1.438998e+00 | 1.262125e+00 | 6.414295e+00 | 1.414757e-10 | 3.257568e-10 | UP | | ENSG00000188185 | LncEditing_181429 | THCA | chr7_39792937_+ | 2.002555e+00 | 1.271692e+00 | 1.526501e+00 | 1.015886e+01 | 3.025850e-24 | 1.680722e-23 | UP | | ENSG00000188185 | LncEditing_181429 | THYM | chr7_39792937_+ | 2.230761e+00 | 1.388223e+00 | 1.461353e+00 | 4.512998e+00 | 6.391755e-06 | 1.467937e-05 | UP | | ENSG00000188185 | LncEditing_181422 | OV | chr7_39792897_+ | 2.601199e+00 | 1.909037e+00 | 2.240484e+00 | 5.705534e+00 | 1.159787e-08 | 1.748236e-08 | UP | | ENSG00000188185 | LncEditing_181429 | OV | chr7_39792937_+ | 2.524612e+00 | 1.714833e+00 | 1.792134e+00 | 8.622157e+00 | 6.570454e-18 | 2.436102e-17 | UP | | ENSG00000188185 | LncEditing_181422 | TGCT | chr7_39792897_+ | 5.996444e+00 | 3.288083e+00 | 1.153588e+00 | 4.077653e+00 | 4.549268e-05 | 6.483103e-05 | UP | | ENSG00000188185 | LncEditing_181429 | TGCT | chr7_39792937_+ | 4.735544e+00 | 2.208803e+00 | 9.088715e-01 | 6.870687e+00 | 6.389356e-12 | 3.038659e-11 | UP | | ENSG00000188185 | LncEditing_181432 | TGCT | chr7_39793004_+ | 6.318140e+00 | 3.287708e+00 | 1.061100e+00 | 4.945139e+00 | 7.608947e-07 | 1.341405e-06 | UP | | ENSG00000188185 | LncEditing_181429 | READ | chr7_39792937_+ | 3.378202e+00 | 2.089810e+00 | 1.443243e+00 | 4.643281e+00 | 3.429192e-06 | 6.858385e-06 | UP | | ENSG00000188185 | LncEditing_181429 | LUAD | chr7_39792937_+ | 3.167763e+00 | 1.451196e+00 | 8.879246e-01 | 1.118719e+01 | 4.711125e-29 | 4.163097e-28 | UP | | ENSG00000188185 | LncEditing_181422 | STAD | chr7_39792897_+ | 3.789893e+00 | 3.006227e+00 | 2.992193e+00 | 4.640743e+00 | 3.471581e-06 | 4.245350e-06 | UP | | ENSG00000188185 | LncEditing_181424 | STAD | chr7_39792925_+ | 3.716233e+00 | 3.150701e+00 | 4.198717e+00 | 2.709997e+00 | 6.728381e-03 | 7.002211e-03 | UP | | ENSG00000188185 | LncEditing_181429 | STAD | chr7_39792937_+ | 3.726775e+00 | 2.502684e+00 | 1.740790e+00 | 7.718418e+00 | 1.177827e-14 | 2.760471e-14 | UP | | ENSG00000188185 | LncEditing_181432 | STAD | chr7_39793004_+ | 4.123211e+00 | 3.083485e+00 | 2.385461e+00 | 4.565647e+00 | 4.979550e-06 | 6.022564e-06 | UP | | ENSG00000188185 | LncEditing_181433 | STAD | chr7_39793042_+ | 4.440906e+00 | 2.769872e+00 | 1.468354e+00 | 7.424741e+00 | 1.130010e-13 | 2.426047e-13 | UP | | ENSG00000188185 | LncEditing_181429 | CESC | chr7_39792937_+ | 1.976298e+00 | 1.094352e+00 | 1.172713e+00 | 6.389351e+00 | 1.665908e-10 | 3.891358e-10 | UP | | ENSG00000188185 | LncEditing_181429 | PRAD | chr7_39792937_+ | 1.798502e+00 | 1.047293e+00 | 1.281836e+00 | 7.786135e+00 | 6.909003e-15 | 1.814765e-14 | UP | | ENSG00000188185 | LncEditing_181429 | BRCA | chr7_39792937_+ | 2.466680e+00 | 1.425553e+00 | 1.264145e+00 | 1.409266e+01 | 4.213637e-45 | 1.465701e-44 | UP | | ENSG00000188185 | LncEditing_181429 | PAAD | chr7_39792937_+ | 2.682098e+00 | 1.424887e+00 | 1.095873e+00 | 5.421138e+00 | 5.922073e-08 | 1.566785e-07 | UP | | ENSG00000188185 | LncEditing_181424 | ESCA | chr7_39792925_+ | 3.394782e+00 | 4.333737e+00 | -2.838550e+00 | -1.997010e+00 | 4.582415e-02 | 4.597770e-02 | DOWN | | ENSG00000188185 | LncEditing_181429 | ESCA | chr7_39792937_+ | 4.364631e+00 | 3.637487e+00 | 3.803473e+00 | 1.990663e+00 | 4.651795e-02 | 4.665150e-02 | UP | | ENSG00000188185 | LncEditing_181433 | ESCA | chr7_39793042_+ | 5.909532e+00 | 3.841886e+00 | 1.609712e+00 | 4.598266e+00 | 4.260215e-06 | 6.315001e-06 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000188185 | LncEditing_181429 | -5.038838e-01 | 2.783060e-02 | 4.405737e-02 | | ENSG00000188185 | LncEditing_181422 | -3.780358e-01 | 1.722647e-04 | 6.128104e-04 | | ENSG00000188185 | LncEditing_181429 | -3.277165e-01 | 1.211743e-05 | 9.922571e-05 | | ENSG00000188185 | LncEditing_181429 | -3.574972e-01 | 4.297321e-06 | 1.258933e-05 | | ENSG00000188185 | LncEditing_181429 | -7.866479e-01 | 2.343541e-05 | 3.046603e-04 | | ENSG00000188185 | LncEditing_181422 | -5.457626e-01 | 1.564306e-02 | 2.545312e-02 | | ENSG00000188185 | LncEditing_181419 | -5.563246e-01 | 5.837410e-03 | 1.144132e-02 | | ENSG00000188185 | LncEditing_181424 | -3.615182e-01 | 2.190143e-02 | 2.378832e-02 | | ENSG00000188185 | LncEditing_181429 | -3.324756e-01 | 5.366690e-07 | 2.368052e-05 | | ENSG00000188185 | LncEditing_181429 | -3.206209e-01 | 2.244948e-04 | 3.402499e-03 | | ENSG00000188185 | LncEditing_181429 | -5.226872e-01 | 1.073966e-03 | 3.916819e-03 | | ENSG00000188185 | LncEditing_181419 | -3.398681e-01 | 1.054268e-04 | 1.829721e-04 | | ENSG00000188185 | LncEditing_181429 | -3.009036e-01 | 1.195185e-06 | 5.704291e-06 | | ENSG00000188185 | LncEditing_181429 | -3.967561e-01 | 2.975190e-03 | 3.605527e-03 | | ENSG00000188185 | LncEditing_181429 | -4.637526e-01 | 6.939050e-04 | 1.744140e-03 | | ENSG00000188185 | LncEditing_181429 | -4.465085e-01 | 3.035792e-03 | 7.076950e-03 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
 |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | | ENSG00000188185 | ENSG00000184863 | RBM33 | exon_skip_133217 | ENSG00000067365:chr16:8635038-8635079 | METTL22 | ENST00000381920 | Frame-shift | UVM,SKCM,READ,MESO,PAAD | | ENSG00000188185 | ENSG00000079134 | THOC1 | exon_skip_133217 | ENSG00000067365:chr16:8635038-8635079 | METTL22 | ENST00000381920 | Frame-shift | STAD,UVM,SKCM,PAAD,THCA | | ENSG00000188185 | ENSG00000134815 | DHX34 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | SARC,READ,OV,PAAD,THCA | | ENSG00000188185 | ENSG00000184863 | RBM33 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | SARC,UVM,SKCM,OV,MESO,UCS,PAAD,THCA | | ENSG00000188185 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | SARC,STAD,UVM,SKCM,READ,OV,MESO,UCS,PAAD,TGCT,THCA | | ENSG00000188185 | ENSG00000079134 | THOC1 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | SARC,STAD,UVM,SKCM,OV,UCS,PAAD,THCA |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000188185 | LINC00265,hsa-mir-455,BRD4 | KICH,TGCT,CHOL,DLBC,KIRP | | ENSG00000188185 | LINC00265,hsa-mir-455,RNF34 | KICH,TGCT,CHOL,DLBC,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000188185.10 | ENST00000340510.7 | 123 | 711 | 340 | | ENSG00000188185.10 | ENST00000448955.1 | 376 | 1920 | 3047 |
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