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lncRNA: ENSG00000182873

Summary for PRKCZ-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000182873
	Gene symbol	PRKCZ-AS1
	Gene name	PRKCZ antisense RNA 1
	HGNC	40477
	Entrez ID	100506504
	Gene type	antisense
	Synonyms	01p36.33\|RP11-181G12.2\|PRKCZ-AS1
	UniProtAcc

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Structure and expression level for PRKCZ-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000182873	1.130997e+02	-1.117506e+00	3.643474e-01	-3.067145e+00	2.161140e-03	7.398425e-03	DOWN	GBM

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for PRKCZ-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000128908	INO80	64.19	96.7556	Q9ULG1	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000168137	SETD5	62.15	97.0472	Q9C0A6	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000100425	BRD1	60.77	95.44	O95696	Epi	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000156983	BRPF1	60.72	95.4208	P55201	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000127511	SIN3B	59.6	95.4079	O75182	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000197724	PHF2	55.51	96.5683	O75151	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000141867	BRD4	54.4	97.4242	O60885	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000164080	RAD54L2	52.63	96.6919	Q9Y4B4	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000181090	EHMT1	52.42	96.4938	Q9H9B1	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000185658	BRWD1	51.78	97.9269	Q9NSI6	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000116731	PRDM2	50.02	95.8989	Q13029	TF,Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000101040	ZMYND8	49.88	96.8414	Q9ULU4	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000101126	ADNP	49.51	96.5432	Q9H2P0	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000124177	CHD6	49.32	97.6749	Q8TD26	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000187605	TET3	46.38	97.2929	O43151	TF,Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000127663	KDM4B	45.8	96.0762	O94953	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000173575	CHD2	45.52	96.6394	O14647	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000111752	PHC1	44.96	96.0194	P78364	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000131149	GSE1	42.68	97.0503	Q14687	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000139613	SMARCC2	41.89	91.8893	Q8TAQ2	Epi	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000166987	MBD6	37.94	95.2135	Q96DN6	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000094631	HDAC6	37.91	96.1153	Q9UBN7	Epi	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000094916	CBX5	33.64	90.7112	P45973	Epi	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000272333	KMT2B	31.62	97.6438	Q9UMN6	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000049618	ARID1B	28.22	96.5195	Q8NFD5	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000130382	MLLT1	24.47	93.6174	Q03111	Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000204371	EHMT2	23.49	91.2585	Q96KQ7	Epi	Predict
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000181090	EHMT1	22.11	92.8701	Q9H9B1	Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000141867	BRD4	21.77	94.7663	O60885	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000169057	MECP2	20.71	94.2144	P51608	TF,Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000185658	BRWD1	19.66	93.9852	Q9NSI6	Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000124177	CHD6	17.38	92.2274	Q8TD26	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000011258	MBTD1	17.01	92.8756	Q05BQ5	Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000131149	GSE1	16.39	95.5967	Q14687	Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000120616	EPC1	14.59	90.5105	Q9H2F5	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000143033	MTF2	11.35	95.242	Q9Y483	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000147162	OGT	57.7	94.634	O15294	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000188976	NOC2L	56.79	93.8251	Q9Y3T9	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000080603	SRCAP	54.18	94.9484	Q6ZRS2	TF,Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000108557	RAI1	53.9	96.061	Q7Z5J4	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000005483	KMT2E	53.66	96.95	Q8IZD2	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000275023	MLLT6	53.05	95.6219	P55198	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000170004	CHD3	52.54	95.6712	Q12873	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000005339	CREBBP	51.97	97.7999	Q92793	Epi	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000130699	TAF4	48.29	92.037	O00268	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000008083	JARID2	47.94	96.8218	Q92833	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000196498	NCOR2	47.65	96.9267	Q9Y618	Epi	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000112787	FBRSL1	43.49	95.5941	Q9HCM7	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000115548	KDM3A	42.87	94.2477	Q9Y4C1	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000168769	TET2	40.98	96.7338	Q6N021	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000137166	FOXP4	38.55	95.1304	Q8IVH2	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000183495	EP400	38.5	97.7773	Q96L91	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000116560	SFPQ	30.45	96.4903	P23246	RBP,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000120071	KANSL1	27.85	96.0099	Q7Z3B3	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000171456	ASXL1	25.83	96.8016	Q8IXJ9	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000204227	RING1	25.28	94.2568	Q06587	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000111676	ATN1	24.04	96.0155	P54259	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000127483	HP1BP3	21.63	93.7312	Q5SSJ5	Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000055609	KMT2C	19.15	94.0096	Q8NEZ4	Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000005339	CREBBP	18.5	94.4753	Q92793	Epi	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000184402	SS18L1	16.98	92.689	O75177	Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000168769	TET2	16.3	94.9263	Q6N021	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000130024	PHF10	15.3	92.8794	Q8WUB8	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000116273	PHF13	14.74	93.0607	Q86YI8	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000066136	NFYC	14.46	93.4424	Q13952	TF,Epi	ChIP-seq
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000183495	EP400	13.87	94.8498	Q96L91	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000162227	TAF6L	12.0	91.7257	Q9Y6J9	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000178028	DMAP1	11.86	94.5914	Q9NPF5	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000143258	USP21	11.63	90.8083	Q9UK80	Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000169592	INO80E	11.1	92.3739	Q8NBZ0	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000066117	SMARCD1	5.24	95.3295	Q96GM5	Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000119760	SUPT7L	1.84	94.0076	O94864	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000167967	E4F1	57.3	91.9974	Q66K89	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000130254	SAFB2	55.69	96.5927	Q14151	TF,RBP	ENCODE,Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000080603	SRCAP	54.18	94.8929	Q6ZRS2	TF,Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000164916	FOXK1	54.14	92.3501	P85037	TF	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000135164	DMTF1	53.83	94.0778	Q9Y222	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000079432	CIC	52.03	93.2433	Q96RK0	TF	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000130940	CASZ1	50.25	97.1598	Q86V15	TF	ChIP-seq,catRAPID
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000116731	PRDM2	50.02	95.6054	Q13029	TF,Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000101126	ADNP	49.51	96.4367	Q9H2P0	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000105127	AKAP8	49.48	95.784	O43823	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000157933	SKI	49.15	96.0211	P12755	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000187605	TET3	46.38	97.3831	O43151	TF,Epi	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000196867	ZFP28	45.47	95.5471	Q8NHY6	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000011451	WIZ	44.34	96.6088	O95785	TF	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000099326	MZF1	44.3	93.8434	P28698	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000100105	PATZ1	43.55	94.7642	Q9HBE1	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000168769	TET2	40.98	96.7377	Q6N021	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000132005	RFX1	40.71	93.0374	P22670	TF	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000167232	ZNF91	40.17	93.9935	Q05481	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000070476	ZXDC	38.84	95.4641	Q2QGD7	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000137166	FOXP4	38.55	93.0094	Q8IVH2	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000166987	MBD6	37.94	95.1055	Q96DN6	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000126464	PRR12	35.68	96.1721	Q9ULL5	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000140836	ZFHX3	34.17	96.9503	Q15911	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000272333	KMT2B	31.62	97.7416	Q9UMN6	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000198040	ZNF84	30.49	94.6938	P51523	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000168795	ZBTB5	26.06	95.2148	O15062	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000166432	ZMAT1	23.15	95.8908	Q5H9K5	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000186272	ZNF17	22.9	94.2182	P17021	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000213928	IRF9	22.61	91.9999	Q00978	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000169057	MECP2	20.71	94.3921	P51608	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000126705	AHDC1	20.67	93.9218	Q5TGY3	TF	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000123411	IKZF4	20.43	95.5555	Q9H2S9	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000165512	ZNF22	20.07	90.5899	P17026	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000142065	ZFP14	18.22	90.9563	Q9HCL3	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000112033	PPARD	17.25	95.2752	Q03181	TF	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000168769	TET2	16.3	94.9609	Q6N021	TF,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000185670	ZBTB3	14.77	93.8778	Q9H5J0	TF	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000066136	NFYC	14.46	93.48	Q13952	TF,Epi	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000184939	ZFP90	13.13	94.6326	Q8TF47	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000179886	TIGD5	12.66	93.2944	Q53EQ6	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000143033	MTF2	11.35	94.48	Q9Y483	TF,Epi	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000168795	ZBTB5	11.0	91.3536	O15062	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000185252	ZNF74	10.56	93.3418	Q16587	TF,RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000278129	ZNF8	9.99	93.7348	P17098	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000041988	THAP3	9.63	92.0463	Q8WTV1	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000167766	ZNF83	8.67	94.6462	P51522	TF	ChIP-seq
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000204304	PBX2	7.12	95.4287	P40425	TF	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000221944	TIGD1	6.77	91.1021	Q96MW7	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000130254	SAFB2	55.69	96.6688	Q14151	TF,RBP	ENCODE,Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000004534	RBM6	55.02	96.154	P78332	RBP	High-throughput data combine LncPro prediction,Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000134698	AGO4	51.0	93.4471	Q9HCK5	RBP	GSE67990
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000003756	RBM5	49.84	95.5866	P52756	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000163728	TTC14	49.39	94.777	Q96N46	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000106344	RBM28	48.31	96.0814	Q9NW13	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000100650	SRSF5	41.03	94.1488	Q13243	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000085872	CHERP	40.4	95.6227	Q8IWX8	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000079134	THOC1	38.86	92.2012	Q96FV9	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000100201	DDX17	35.61	93.7157	Q92841	RBP	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000135870	RC3H1	33.45	96.5949	Q5TC82	RBP	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000164548	TRA2A	32.76	94.7755	Q13595	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000116560	SFPQ	30.45	96.507	P23246	RBP,Epi	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000129351	ILF3	26.96	97.3435	Q12906	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000181588	MEX3D	25.78	93.9203	Q86XN8	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000133226	SRRM1	23.79	95.9537	Q8IYB3	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000089280	FUS	19.06	96.1568	P35637	RBP	High-throughput data combine LncPro prediction
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000184863	RBM33	17.36	92.2454	Q96EV2	RBP	Predict
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000116350	SRSF4	14.71	94.4969	Q08170	RBP	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000133226	SRRM1	11.11	90.5261	Q8IYB3	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000185252	ZNF74	10.56	92.8905	Q16587	TF,RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000162231	NXF1	8.28	94.0965	Q9UBU9	RBP	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000167978	SRRM2	6.69	95.1762	Q9UQ35	RBP	NA
ENSG00000182873	ENST00000444529	RP11-181G12.2	ENSG00000149532	CPSF7	6.58	90.2002	Q8N684	RBP	NA
ENSG00000182873	ENST00000333854	RP11-181G12.2	ENSG00000254726	MEX3A	4.57	90.1285	A1L020	RBP	NA

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lncRNA-DNA interaction for PRKCZ-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for PRKCZ-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

MCTS1,DERA,TTC1,PSMD8,HSPA8,GET3,ABRACL,GLRX,DAD1,NDUFB3,SDHD,COX5A,MDH1,SSR3,EMC3,ATP6V0E1,GSTO1,SNX6,ACTR3,HCCS,ARPC5,LACTB,ARPC2,NDUFA12,SELENOT,PPA2,CIAO2A,NDUFA6,NOP10,NDUFB5,C1orf43

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000182873	ENST00000444529	exon_skip_111863	chr14:23565815-23565892	-16.13	-0.2240	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000182873	ENST00000444529	exon_skip_114376	chr14:74293153-74293248	-15.61	-0.1774	ABCD4	ENST00000356924	Frame-shift
ENSG00000182873	ENST00000444529	exon_skip_302168	chr19:10680345-10680443	-13.56	-0.1524	ILF3	ENST00000590261	Frame-shift
ENSG00000182873	ENST00000444529	exon_skip_370518	chr22:50247691-50247776	-14.37	-0.2318	HDAC10	ENST00000216271	Frame-shift
ENSG00000182873	ENST00000444529	exon_skip_382458	chr3:38131595-38131638	-7.21	-0.1849	ACAA1	ENST00000333167	Frame-shift
ENSG00000182873	ENST00000444529	exon_skip_499567	chr9:128325142-128325239	-18.04	-0.2577	COQ4	ENST00000300452	Frame-shift
ENSG00000182873	ENST00000444529	exon_skip_66482	chr11:126274926-126275021	-13.45	-0.1528	FOXRED1	ENST00000263578	Frame-shift
ENSG00000182873	ENST00000333854	exon_skip_127618	chr15:58890280-58890461	-17.34	-0.1112	SLTM	ENST00000380516	Frame-shift
ENSG00000182873	ENST00000444529	exon_skip_133217	chr16:8635038-8635079	-8.33	-0.8330	METTL22	ENST00000381920	Frame-shift
ENSG00000182873	ENST00000444529	exon_skip_290158	chr17:42953723-42953778	-8.31	-0.2374	AARSD1	ENST00000427569	Frame-shift
ENSG00000182873	ENST00000444529	exon_skip_470226	chr7:103307595-103307708	-14.03	-0.1576	PMPCB	ENST00000249269	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for PRKCZ-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000182873	ENSG00000162231	NXF1	exon_skip_370518	ENSG00000100429:chr22:50247691-50247776	HDAC10	ENST00000216271	Frame-shift	SARC,READ,PRAD,PAAD,THCA
ENSG00000182873	ENSG00000003756	RBM5	exon_skip_370518	ENSG00000100429:chr22:50247691-50247776	HDAC10	ENST00000216271	Frame-shift	SARC,STAD,READ,PRAD,PAAD,THCA
ENSG00000182873	ENSG00000004534	RBM6	exon_skip_370518	ENSG00000100429:chr22:50247691-50247776	HDAC10	ENST00000216271	Frame-shift	SARC,STAD,READ,PRAD,PAAD,THCA
ENSG00000182873	ENSG00000162231	NXF1	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	SARC,READ,OV,MESO,PAAD,THCA
ENSG00000182873	ENSG00000184863	RBM33	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	SARC,OV,MESO,UCS,PAAD,THCA
ENSG00000182873	ENSG00000003756	RBM5	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	SARC,STAD,OV,PCPG,PAAD,THCA
ENSG00000182873	ENSG00000004534	RBM6	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	SARC,STAD,READ,OV,UCS,PAAD,THCA
ENSG00000182873	ENSG00000130254	SAFB2	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	SARC,READ,OV,PCPG,PAAD,THCA
ENSG00000182873	ENSG00000079134	THOC1	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	STAD,OV,UCS,PCPG,PAAD,THCA

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000182873	ENST00000333854	DERA	ENSG00000023697	ENST00000532964	-0.6850	45	GBM	-
ENSG00000182873	ENST00000333854	SSR3	ENSG00000114850	ENST00000463503	-0.2861	470	GBM	-
ENSG00000182873	ENST00000333854	SSR3	ENSG00000114850	ENST00000496050	-0.6527	406	GBM	-
ENSG00000182873	ENST00000333854	DAD1	ENSG00000129562	ENST00000538631	-0.1073	649	GBM	-
ENSG00000182873	ENST00000333854	DAD1	ENSG00000129562	ENST00000543337	-0.1077	1080	GBM	-
ENSG00000182873	ENST00000333854	SDHD	ENSG00000204370	ENST00000528182	-0.1001	500	GBM	-
ENSG00000182873	ENST00000333854	SDHD	ENSG00000204370	ENST00000534010	-0.1111	981	GBM	-
ENSG00000182873	ENST00000333854	ATP6V0E1	ENSG00000113732	ENST00000517669	-0.1043	28	GBM	-
ENSG00000182873	ENST00000333854	CIAO2A	ENSG00000166797	ENST00000559950	-0.1273	1010	GBM	-
ENSG00000182873	ENST00000333854	GLRX	ENSG00000173221	ENST00000508780	-0.1315	1013	GBM	-
ENSG00000182873	ENST00000333854	GLRX	ENSG00000173221	ENST00000512469	-0.1720	549	GBM	-
ENSG00000182873	ENST00000444529	NOP10	ENSG00000182117	ENST00000557912	-0.1158	1	GBM	-
ENSG00000182873	ENST00000444529	DERA	ENSG00000023697	ENST00000532964	-0.6850	7	GBM	-
ENSG00000182873	ENST00000444529	SSR3	ENSG00000114850	ENST00000476217	-0.1133	264	GBM	-
ENSG00000182873	ENST00000444529	SSR3	ENSG00000114850	ENST00000463503	-0.3187	80	GBM	-
ENSG00000182873	ENST00000444529	SSR3	ENSG00000114850	ENST00000496050	-0.9367	79	GBM	-
ENSG00000182873	ENST00000444529	DAD1	ENSG00000129562	ENST00000543337	-0.1072	310	GBM	-
ENSG00000182873	ENST00000444529	ATP6V0E1	ENSG00000113732	ENST00000517669	-0.1080	221	GBM	-
ENSG00000182873	ENST00000444529	CIAO2A	ENSG00000166797	ENST00000559950	-0.1898	414	GBM	-
ENSG00000182873	ENST00000444529	GLRX	ENSG00000173221	ENST00000508780	-0.1510	12	GBM	-
ENSG00000182873	ENST00000444529	GLRX	ENSG00000173221	ENST00000512469	-0.2590	118	GBM	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000182873.5	ENST00000333854.2	242	1384	656
ENSG00000182873.5	ENST00000444529.1	263	326	1117

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential