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lncRNA: ENSG00000179406

Summary for LINC00174

Gene summary

Gene information	Ensembl ID	ENSG00000179406
	Gene symbol	LINC00174
	Gene name	long intergenic non-protein coding RNA 174
	HGNC	27788
	Entrez ID	285908
	Gene type	lincRNA
	Synonyms	07q11.21\|LINC00174
	UniProtAcc

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Structure and expression level for LINC00174

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000179406	5.477236e+02	1.504266e+00	1.295844e-01	1.160839e+01	3.740000e-31	4.020000e-30	UP	KIRC
ENSG00000179406	5.755918e+02	1.831149e+00	1.819359e-01	1.006480e+01	7.900000e-24	2.410000e-22	UP	HNSC
ENSG00000179406	7.867951e+02	1.324798e+00	2.004974e-01	6.607561e+00	3.910000e-11	3.310000e-10	UP	KIRP
ENSG00000179406	3.062835e+02	-1.549047e+00	3.937496e-01	-3.934092e+00	8.350000e-05	1.561710e-03	DOWN	PCPG
ENSG00000179406	6.004494e+02	1.053011e+00	1.491232e-01	7.061347e+00	1.650000e-12	6.870000e-12	UP	LUSC
ENSG00000179406	2.042654e+02	1.002442e+00	1.477092e-01	6.786588e+00	1.150000e-11	7.540000e-11	UP	COAD
ENSG00000179406	2.481601e+02	1.601614e+00	2.748543e-01	5.827140e+00	5.640000e-09	1.240000e-07	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000179406	4.883066e-01	6.664717e-04	CHOL	1.245561e-03

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lncRNA-Protein interaction for LINC00174

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000272333	KMT2B	40.07	94.0135	Q9UMN6	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000104885	DOT1L	66.46	96.4455	Q8TEK3	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000263001	GTF2I	60.03	96.6561	P78347	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000101126	ADNP	46.26	95.5028	Q9H2P0	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000010803	SCMH1	46.07	92.1703	Q96GD3	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000112511	PHF1	41.62	92.7931	O43189	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000143033	MTF2	35.93	95.1219	Q9Y483	TF,Epi	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000076108	BAZ2A	57.12	90.1713	Q9UIF9	TF,RBP,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000198919	DZIP3	71.77	96.6148	Q86Y13	RBP,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000277258	PCGF2	68.58	91.6288	P35227	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000155363	MOV10	56.18	95.9726	Q9HCE1	RBP,Epi	CLIP,iCLIP,PAR-CLIP,High-throughput data;GSE70061

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000118058	KMT2A	72.31	95.4131	Q03164	TF,Epi	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000124782	RREB1	65.51	92.8335	Q92766	TF	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000196867	ZFP28	60.69	91.8588	Q8NHY6	TF	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000187605	TET3	58.97	92.7617	O43151	TF,Epi	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000076108	BAZ2A	57.12	93.8195	Q9UIF9	TF,RBP,Epi	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000171634	BPTF	53.97	94.3701	Q12830	TF,Epi	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000159140	SON	50.97	92.856	P18583	TF,RBP	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000272333	KMT2B	40.07	95.1034	Q9UMN6	TF,Epi	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000126705	AHDC1	24.65	91.7403	Q5TGY3	TF	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000185670	ZBTB3	7.67	91.3811	Q9H5J0	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000236287	ZBED5	79.14	93.4451	Q49AG3	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000168152	THAP9	68.78	94.5213	Q9H5L6	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000277258	PCGF2	68.58	93.0489	P35227	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000147862	NFIB	68.2	90.6833	O00712	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000104885	DOT1L	66.46	96.6521	Q8TEK3	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000263001	GTF2I	60.03	96.7791	P78347	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000170581	STAT2	57.74	95.5256	P52630	TF	ChIP-seq
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000197857	ZNF44	57.25	92.3098	P15621	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000186272	ZNF17	49.78	91.6193	P17021	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000158711	ELK4	47.17	90.2632	P28324	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000140993	TIGD7	46.66	95.4924	Q6NT04	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000101126	ADNP	46.26	95.6568	Q9H2P0	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000010803	SCMH1	46.07	93.0084	Q96GD3	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000102878	HSF4	45.95	92.7792	Q9ULV5	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000112511	PHF1	41.62	93.1809	O43189	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000221944	TIGD1	39.51	95.1697	Q96MW7	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000143033	MTF2	35.93	95.1082	Q9Y483	TF,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000196378	ZNF34	34.07	94.4205	Q8IZ26	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000126456	IRF3	29.14	93.5562	Q14653	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000128604	IRF5	27.84	94.2542	Q13568	TF	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000205250	E2F4	14.71	90.7076	Q16254	TF	ChIP-seq

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000162927	PUS10	82.34	93.4627	Q3MIT2	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000079134	THOC1	77.83	95.6713	Q96FV9	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000082898	XPO1	73.59	91.6947	O14980	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000278619	MRM1	71.99	90.866	Q6IN84	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000198919	DZIP3	71.77	96.7972	Q86Y13	RBP,Epi	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000156304	SCAF4	67.15	96.2376	O95104	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000122965	RBM19	63.16	95.5047	Q9Y4C8	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000160917	CPSF4	62.09	92.109	O95639	RBP	PAR-CLIP
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000126070	AGO3	59.78	94.9872	Q9H9G7	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000162408	NOL9	59.64	94.5054	Q5SY16	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000155363	MOV10	56.18	96.2372	Q9HCE1	RBP,Epi	CLIP,iCLIP,PAR-CLIP,High-throughput data;GSE70061
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000129566	TEP1	54.99	97.3401	Q99973	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000139746	RBM26	54.26	93.3498	Q5T8P6	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000136271	DDX56	49.89	94.8969	Q9NY93	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000117569	PTBP2	49.16	91.6862	Q9UKA9	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000135870	RC3H1	48.17	95.2225	Q5TC82	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000071894	CPSF1	43.43	95.7374	Q10570	RBP	PAR-CLIP
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000241058	NSUN6	37.2	93.058	Q8TEA1	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000111364	DDX55	33.73	94.746	Q8NHQ9	RBP	NA
ENSG00000179406	ENST00000421767	LINC00174	ENSG00000179151	EDC3	31.34	94.6789	Q96F86	RBP	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000198000	NOL8	63.53	90.0081	Q76FK4	RBP	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000106344	RBM28	61.18	90.3595	Q9NW13	RBP	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000076108	BAZ2A	57.12	93.5278	Q9UIF9	TF,RBP,Epi	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000159140	SON	50.97	93.0341	P18583	TF,RBP	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000135870	RC3H1	43.0	91.3881	Q5TC82	RBP	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000156304	SCAF4	36.8	94.1376	O95104	RBP	NA
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000129351	ILF3	32.96	92.9987	Q12906	RBP	ENCODE,eCLIP
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000111605	CPSF6	10.34	90.276	Q16630	RBP	eCLIP,PAR-CLIP
ENSG00000179406	ENST00000416572	LINC00174	ENSG00000149532	CPSF7	3.78	90.8929	Q8N684	RBP	High-throughput data,PAR-CLIP

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lncRNA-DNA interaction for LINC00174

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LINC00174

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000179406	ENST00000416366	exon_skip_470077	chr7:102397619-102397698	-16.26	-1.0163	PRKRIP1	ENST00000397912,ENST00000496391	Frame-shift

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000179406	ENST00000416366	exon_skip_38175	chr1:234398381-234398553	-19.55	-0.1470	TARBP1	ENST00000040877	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_66482	chr11:126274926-126275021	-18.00	-0.2022	FOXRED1	ENST00000263578	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_111863	chr14:23565815-23565892	-17.99	-0.2464	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_382458	chr3:38131595-38131638	-9.86	-0.2595	ACAA1	ENST00000333167	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_41813	chr10:68337857-68337996	-17.45	-0.1419	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_95407	chr12:95040475-95040597	-15.88	-0.1393	NR2C1	ENST00000333003	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_133217	chr16:8635038-8635079	-10.24	-0.2844	METTL22	ENST00000381920	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_309204	chr19:49181348-49181461	-24.70	-0.2573	TRPM4	ENST00000252826	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_370518	chr22:50247691-50247776	-18.25	-0.3259	HDAC10	ENST00000216271	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_380242	chr3:186784961-186785101	-14.74	-0.1391	EIF4A2	ENST00000323963	Frame-shift
ENSG00000179406	ENST00000438894	exon_skip_387016	chr3:121788283-121788432	-11.92	-0.1310	IQCB1	ENST00000310864	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_436035	chr5:79656957-79657001	-13.59	-0.4384	TENT2	ENST00000296783,ENST00000428308,ENST00000453514	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_442657	chr5:74730259-74730398	-19.10	-0.1661	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_4796	chr1:41007448-41007545	-15.69	-0.2615	CTPS1	ENST00000372616,ENST00000372621	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_7523	chr1:78660553-78660654	-14.53	-0.1772	IFI44	ENST00000370747	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_9446	chr1:147270931-147271005	-13.21	-0.3002	CHD1L	ENST00000369258	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_41841	chr10:68756272-68756483	-27.16	-0.1509	CCAR1	ENST00000265872	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_53559	chr10:101793912-101793998	-12.79	-0.1523	OGA	ENST00000361464	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_74009	chr11:64773429-64773505	-15.81	-0.2875	SF1	ENST00000377390	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_114365	chr14:74290026-74290118	-16.51	-0.1795	ABCD4	ENST00000356924	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_114376	chr14:74293153-74293248	-16.91	-0.3020	ABCD4	ENST00000356924	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_139422	chr16:89114338-89114487	-24.31	-0.1814	ACSF3	ENST00000317447,ENST00000406948	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_290158	chr17:42953723-42953778	-11.77	-0.2402	AARSD1	ENST00000427569	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_300663	chr19:1425877-1425960	-9.60	-0.1263	DAZAP1	ENST00000233078	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_302168	chr19:10680345-10680443	-12.83	-0.1584	ILF3	ENST00000590261	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_326885	chr2:74490024-74490127	-20.82	-0.2479	TTC31	ENST00000233623	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_327433	chr2:86125794-86125880	-5.88	-0.1307	PTCD3	ENST00000254630	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_327748	chr2:95410863-95411026	-21.88	-0.1439	FAHD2A	ENST00000233379,ENST00000447036	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_353131	chr20:58669290-58669453	-29.57	-0.1945	STX16	ENST00000371141	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_370525	chr22:50250426-50250523	-19.10	-0.1969	HDAC10	ENST00000216271	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_446770	chr5:178215275-178215430	-20.84	-0.1437	PHYKPL	ENST00000308158	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_470226	chr7:103307595-103307708	-16.16	-0.1816	PMPCB	ENST00000249269	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_499390	chr9:127808557-127808705	-29.84	-0.2508	FPGS	ENST00000373247	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_511212	chrX:71555189-71555385	-23.37	-0.1224	OGT	ENST00000373719	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_59071	chr11:47234756-47234934	-20.74	-0.1620	DDB2	ENST00000256996	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_377198	chr3:123130479-123130616	-20.90	-0.1850	PDIA5	ENST00000316218	Frame-shift
ENSG00000179406	ENST00000416366	exon_skip_489575	chr8:47782161-47782254	-13.88	-0.1542	PRKDC	ENST00000314191	In-frame
ENSG00000179406	ENST00000416366	exon_skip_131398	chr15:101286213-101286293	-10.91	-0.2480	SNRPA1	ENST00000254193	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for LINC00174

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000179406	ENSG00000241058	NSUN6	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	SARC,UVM,SKCM,OV,MESO,PCPG,PAAD,THCA
ENSG00000179406	ENSG00000139746	RBM26	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	SARC,STAD,UVM,PAAD,THCA
ENSG00000179406	ENSG00000079134	THOC1	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	STAD,UVM,SKCM,OV,PRAD,UCS,PCPG,PAAD,THCA
ENSG00000179406	ENSG00000079134	THOC1	exon_skip_370518	ENSG00000100429:chr22:50247691-50247776	HDAC10	ENST00000216271	Frame-shift	UVM,SKCM,PRAD,PCPG,PAAD
ENSG00000179406	ENSG00000079134	THOC1	exon_skip_442657	ENSG00000164347:chr5:74730259-74730398	GFM2	ENST00000296805,ENST00000509430	Frame-shift	UVM,SKCM,UCS,PCPG,PAAD,THCA
ENSG00000179406	ENSG00000079134	THOC1	exon_skip_470226	ENSG00000105819:chr7:103307595-103307708	PMPCB	ENST00000249269	Frame-shift	UVM,SKCM,PRAD,UCS,PCPG,PAAD,THCA

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000179406.6	ENST00000421767.1	56	86	256
ENSG00000179406.6	ENST00000416572.1	237	3076	3789
ENSG00000179406.6	ENST00000438894.1	62	197	385
ENSG00000179406.6	ENST00000416366.1	76	2	232

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential