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lncRNA: ENSG00000177133 |
Summary for PRDM16-DT |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000177133 | Gene symbol | PRDM16-DT |
| Gene name | PRDM16 divergent transcript | |
| HGNC | 48664 | |
| Entrez ID | 440556 | |
| Gene type | antisense | |
| Synonyms | PRDM16-DT|LINC00982|01p36.32 | |
| UniProtAcc |
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Structure and expression level for PRDM16-DT |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000177133 | 6.138105e+02 | -1.326445e+00 | 1.746842e-01 | -7.593389e+00 | 3.120000e-14 | 2.670000e-13 | DOWN | THCA |
| ENSG00000177133 | 6.076602e+02 | -5.105497e+00 | 3.012524e-01 | -1.694757e+01 | 2.010000e-64 | 8.060000e-63 | DOWN | KIRC |
| ENSG00000177133 | 5.181027e+03 | -1.016010e+00 | 2.691882e-01 | -3.774348e+00 | 1.604270e-04 | 4.431900e-04 | DOWN | KICH |
| ENSG00000177133 | 6.780906e+02 | -6.741855e+00 | 5.399357e-01 | -1.248640e+01 | 8.860000e-36 | 9.800000e-34 | DOWN | KIRP |
| ENSG00000177133 | 8.596004e+02 | -5.675996e+00 | 6.837166e-01 | -8.301679e+00 | 1.030000e-16 | 3.850000e-14 | DOWN | ESCA |
| ENSG00000177133 | 4.238207e+02 | -2.262044e+00 | 3.094563e-01 | -7.309737e+00 | 2.680000e-13 | 5.980000e-12 | DOWN | STAD |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000177133 | -5.209058e-01 | 1.666010e-07 | KICH | 5.889490e-07 |
| ENSG00000177133 | -4.391254e-01 | 4.733852e-30 | KIRC | 1.577951e-28 |
| ENSG00000177133 | -3.437832e-01 | 3.805942e-17 | THCA | 1.512862e-15 |
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lncRNA-Protein interaction for PRDM16-DT |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000177133 | ENST00000321336 | LINC00982 | ENSG00000183337 | BCOR | 3.86 | 92.1259 | Q6W2J9 | Epi | NA |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000177133 | ENST00000445317 | LINC00982 | ENSG00000256223 | ZNF10 | 32.86 | 95.3148 | P21506 | TF | NA |
| ENSG00000177133 | ENST00000321399 | LINC00982 | ENSG00000256223 | ZNF10 | 29.82 | 92.3762 | P21506 | TF | NA |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
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| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| ENSG00000177133 | ENST00000445317 | LINC00982 | ENSG00000099622 | CIRBP | 59.44 | 91.8019 | Q14011 | RBP | NA |
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