 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | | ENSG00000279891 | FLJ42393 | rs13082889:187898523:T:C | 9 | PRAD,LUAD,LIHC,PAAD,KIRP,ESCA,GBM,KIRC,CESC | 0 | | | ENSG00000279891 | FLJ42393 | rs13096994:187897283:G:A | 7 | PRAD,LUAD,LIHC,PAAD,KIRP,ESCA,KIRC | 0 | | | ENSG00000279891 | FLJ42393 | rs2222103:187902932:C:T:- | 13 | PRAD,STAD,LUAD,LIHC,PAAD,KIRP,ESCA,GBM,KIRC,HNSC,BLCA,BRCA,CESC | 0 | | | ENSG00000279891 | FLJ42393 | rs4686477:187906285:G:T | 9 | PRAD,LUAD,LIHC,PAAD,KIRP,ESCA,GBM,KIRC,HNSC | 0 | | | ENSG00000279891 | FLJ42393 | rs58433386:187914311:C:G | 7 | PRAD,LUAD,LIHC,KIRP,GBM,KIRC,HNSC | 0 | | | ENSG00000279891 | FLJ42393 | rs55820429:187901660:G:T | 6 | PRAD,LUAD,LIHC,PAAD,KIRP,GBM | 0 | | | ENSG00000279891 | FLJ42393 | rs745248:187913405:G:A | 7 | PRAD,LUAD,LIHC,KIRP,KIRC,HNSC,BLCA | 0 | | | ENSG00000279891 | FLJ42393 | rs11707006:187909789:G:A | 6 | PRAD,LUAD,LIHC,KIRP,GBM,KIRC | 0 | | | ENSG00000279891 | FLJ42393 | rs12487926:187911047:C:T | 7 | PRAD,STAD,LUAD,LIHC,KIRP,GBM,KIRC | 0 | | | ENSG00000279891 | FLJ42393 | rs75165966:187912698:TGTGTCA:T | 7 | PRAD,LUAD,LIHC,KIRP,KIRC,HNSC,BLCA | 0 | | | ENSG00000279891 | FLJ42393 | rs4686939:187912839:G:A | 7 | PRAD,LUAD,LIHC,KIRP,KIRC,HNSC,BLCA | 0 | | | ENSG00000279891 | FLJ42393 | rs4686478:187912388:C:T:- | 7 | PRAD,LUAD,LIHC,KIRP,KIRC,HNSC,BLCA | 0 | | | ENSG00000279891 | FLJ42393 | rs3056778:187904583:G:GTC | 2 | PRAD,KIRP | 0 | | | ENSG00000279891 | FLJ42393 | rs3864104:187908733:G:A | 1 | PRAD | 0 | | | ENSG00000279891 | FLJ42393 | rs4572756:187915210:G:T | 7 | PRAD,LUAD,LIHC,KIRP,KIRC,HNSC,BLCA | 0 | | | ENSG00000279891 | FLJ42393 | rs1679182:187909753:A:G:- | 7 | PRAD,LUAD,LIHC,KIRP,KIRC,HNSC,BLCA | 0 | | | ENSG00000279891 | FLJ42393 | rs56387490:187909587:C:T | 6 | PRAD,LUAD,LIHC,KIRP,KIRC,BLCA | 0 | | | ENSG00000279891 | FLJ42393 | rs908485:187914741:A:G | 7 | PRAD,LUAD,LIHC,KIRP,KIRC,HNSC,BLCA | 0 | | | ENSG00000279891 | FLJ42393 | rs4686938:187912292:G:T:+ | 8 | PRAD,LUAD,LIHC,KIRP,KIRC,HNSC,BLCA,CESC | 0 | | | ENSG00000279891 | FLJ42393 | rs11276271:187888828:A:AACAAATGGAAAG | 5 | LUAD,LIHC,LUSC,HNSC,BLCA | 0 | | | ENSG00000279891 | FLJ42393 | rs1007308:187889723:C:T:- | 0 | | 6 | LUAD,LIHC,LUSC,HNSC,BLCA,BRCA | | ENSG00000279891 | FLJ42393 | rs344951:187898711:A:G:- | 0 | | 2 | LIHC,BRCA | | ENSG00000279891 | FLJ42393 | rs344952:187898593:G:A | 0 | | 2 | LIHC,BRCA | | ENSG00000279891 | FLJ42393 | rs13096262:187896912:A:G:+ | 0 | | 1 | LUSC | | ENSG00000279891 | FLJ42393 | rs148304329:187900499:A:AAT | 0 | | 1 | BRCA | | ENSG00000279891 | FLJ42393 | rs9855318:187887381:C:T:- | 1 | BRCA | 0 | | | ENSG00000279891 | FLJ42393 | rs9989991:187890435:A:G:- | 0 | | 1 | BRCA |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000279891.1 | ENST00000623801.1 | 167 | 272 | 775 |
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