lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CPEB2,CPEB4,CIC,G3BP2,KLF7,NFAT5,SON,GTF2I,BAZ2A,ZHX1,REST,DDX3X,AGFG1,BACH1,PPARA,AEBP2 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
![lncRNA and exonskipping events negative correlated](images/figure_exon/figure_neg/ENSG00000277969.svg) |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000277969 | ENST00000612330 | exon_skip_41813 | chr10:68337857-68337996 | -21.03 | -0.1535 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_52701 | chr10:97468965-97469104 | -23.04 | -0.1858 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_53559 | chr10:101793912-101793998 | -16.86 | -0.1984 | OGA | ENST00000361464 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_87733 | chr12:120571190-120571291 | -13.40 | -0.1457 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_319223 | chr19:43526200-43526349 | -24.82 | -0.1799 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_374375 | chr3:49675182-49675309 | -21.98 | -0.2093 | APEH | ENST00000296456 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_382458 | chr3:38131595-38131638 | -10.48 | -0.2495 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_470226 | chr7:103307595-103307708 | -14.23 | -0.1452 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_511212 | chrX:71555189-71555385 | -21.10 | -0.1540 | OGT | ENST00000373719 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_494079 | chr8:144099080-144099205 | -25.65 | -0.2788 | SHARPIN | ENST00000398712 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_374581 | chr3:50110378-50110463 | -14.86 | -0.2185 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000277969 | ENST00000612330 | exon_skip_356643 | chr20:35632162-35632234 | -10.61 | -0.1584 | CPNE1 | ENST00000352393,ENST00000397443 | In-frame | ENSG00000277969 | ENST00000612330 | exon_skip_149052 | chr17:8289502-8289588 | -16.24 | -0.2287 | RANGRF | ENST00000226105 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000277969.1 | ENST00000612330.1 | 85 | 9 | 266 |
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