lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | ATF1,DDX3X,AGFG1,STAT3,ELF1,HBP1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
![lncRNA and exonskipping events negative correlated](images/figure_exon/figure_neg/ENSG00000276698.svg) |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000276698 | ENST00000610486 | exon_skip_7523 | chr1:78660553-78660654 | -9.94 | -0.1258 | IFI44 | ENST00000370747 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_111863 | chr14:23565815-23565892 | -13.09 | -0.2296 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_377198 | chr3:123130479-123130616 | -20.93 | -0.1610 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_384420 | chr3:49812647-49812738 | -13.52 | -0.1591 | UBA7 | ENST00000333486 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_9446 | chr1:147270931-147271005 | -9.80 | -0.1690 | CHD1L | ENST00000369258 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_16568 | chr1:201989382-201989531 | -13.15 | -0.1096 | RNPEP | ENST00000295640 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_52701 | chr10:97468965-97469104 | -18.36 | -0.1639 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_66482 | chr11:126274926-126275021 | -14.50 | -0.2164 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_74009 | chr11:64773429-64773505 | -11.69 | -0.2016 | SF1 | ENST00000377390 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_152672 | chr17:42540949-42541206 | -16.80 | -0.1355 | NAGLU | ENST00000225927 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_287763 | chr17:28884224-28884315 | -11.98 | -0.1377 | FLOT2 | ENST00000394908 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_319223 | chr19:43526200-43526349 | -20.97 | -0.1577 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_326885 | chr2:74490024-74490127 | -14.31 | -0.1417 | TTC31 | ENST00000233623 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_339830 | chr2:69423581-69423717 | -13.31 | -0.1082 | NFU1 | ENST00000410022 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_370518 | chr22:50247691-50247776 | -17.00 | -0.2267 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_374375 | chr3:49675182-49675309 | -15.93 | -0.1373 | APEH | ENST00000296456 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_382458 | chr3:38131595-38131638 | -11.45 | -0.7633 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_433210 | chr4:177436275-177436351 | -7.64 | -0.1124 | AGA | ENST00000264595 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_436035 | chr5:79656957-79657001 | -7.83 | -0.3012 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_442657 | chr5:74730259-74730398 | -13.89 | -0.1187 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_445390 | chr5:150403120-150403312 | -20.17 | -0.1096 | CD74 | ENST00000009530 | In-frame | ENSG00000276698 | ENST00000610486 | exon_skip_470226 | chr7:103307595-103307708 | -11.30 | -0.1018 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000276698 | ENST00000610486 | exon_skip_29134 | chr1:111124741-111124881 | -11.50 | -0.1307 | DRAM2 | ENST00000286692,ENST00000539140 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000276698 | hsa-mir-22 | ENST00000610486 | chr14:24198903-24198984 | 194.00 | -86.94 | 86 | NA | ENSG00000276698 | hsa-mir-22 | ENST00000610486 | chr14:24198753-24198832 | 185.00 | -69.64 | 82 | NA | ENSG00000276698 | hsa-mir-22 | ENST00000610486 | chr14:24198464-24198554 | 156.00 | -76.72 | 86 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,HIRIP3 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,C1orf35 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,PRR14 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,C2orf68 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,BOLA1 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,NCAPH2 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,SBK1 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,FBXO46 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,CXXC1 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,RBM14 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,HINFP | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,MKS1 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,BUD13 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,RCCD1 | CHOL,LGG,SARC,THYM,KIRP | ENSG00000276698 | RP11-468E2.10,hsa-mir-22,RSL24D1 | CHOL,LGG,SARC,THYM,KIRP |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000276698.1 | ENST00000610486.1 | 58 | 178 | 2 |
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