lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | STAU1,BAZ2A,SYNJ1,REST,FUBP1,HBP1,AEBP2,BBX,CPEB4,NAF1,TEP1,BACH1,PHF20,NOP9,G3BP1,SF3A1,PRDM2,CPSF2,ATF1,NCOA2,DDX3X,GLYR1,PUM1,NR2C2,PPARA,CREB1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000274104 | ENST00000612269 | exon_skip_298575 | chr18:26035830-26035923 | -9.08 | -0.1227 | SS18 | ENST00000415083 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
![lncRNA and exonskipping events negative correlated](images/figure_exon/figure_neg/ENSG00000274104.svg) |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000274104 | ENST00000612269 | exon_skip_5818 | chr1:45568484-45568684 | -20.16 | -0.1318 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_382458 | chr3:38131595-38131638 | -7.52 | -0.2426 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_29583 | chr1:114780109-114780215 | -15.67 | -0.1599 | SIKE1 | ENST00000060969 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_41813 | chr10:68337857-68337996 | -14.67 | -0.1287 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_41841 | chr10:68756272-68756483 | -21.10 | -0.1005 | CCAR1 | ENST00000265872 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_66482 | chr11:126274926-126275021 | -11.79 | -0.1387 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_87733 | chr12:120571190-120571291 | -11.97 | -0.1345 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_111863 | chr14:23565815-23565892 | -15.03 | -0.2004 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_114376 | chr14:74293153-74293248 | -11.23 | -0.1497 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_319223 | chr19:43526200-43526349 | -21.07 | -0.1484 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_324294 | chr2:27774423-27774530 | -11.61 | -0.1382 | MRPL33 | ENST00000296102 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_374581 | chr3:50110378-50110463 | -10.83 | -0.1354 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_377198 | chr3:123130479-123130616 | -15.10 | -0.1541 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000274104 | ENST00000612269 | exon_skip_445390 | chr5:150403120-150403312 | -20.41 | -0.1140 | CD74 | ENST00000009530 | In-frame | ENSG00000274104 | ENST00000612269 | exon_skip_290158 | chr17:42953723-42953778 | -9.09 | -0.1818 | AARSD1 | ENST00000427569 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000274104.1 | ENST00000612269.1 | 189 | 31 | 600 |
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