lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | GLB1,COPB2,PLS1,CSNK1A1,BECN1,RDX,FTH1,ATG7,OPTN,USP32,LRP10,IQGAP1,PLEKHB2,EIF4G1,SEC23A,PRMT5,TNFSF13,SUCLG2,ABHD5,CLTC,NDUFS1,ALAS1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000273893 | ENST00000610430 | exon_skip_145647 | chr16:69121052-69121170 | -11.90 | -0.1155 | CHTF8 | ENST00000398235,ENST00000448552 | Frame-shift | ENSG00000273893 | ENST00000610430 | exon_skip_361485 | chr21:29008239-29008307 | -7.89 | -0.1547 | RWDD2B | ENST00000493196 | Frame-shift | ENSG00000273893 | ENST00000610430 | exon_skip_382458 | chr3:38131595-38131638 | -9.13 | -0.2174 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000273893 | ENST00000610430 | exon_skip_445390 | chr5:150403120-150403312 | -19.34 | -0.1029 | CD74 | ENST00000009530 | In-frame | ENSG00000273893 | ENST00000610430 | exon_skip_128719 | chr15:66495329-66495419 | -11.62 | -0.1549 | SNAPC5 | ENST00000316634,ENST00000395589 | In-frame | ENSG00000273893 | ENST00000610430 | exon_skip_365794 | chr22:40401592-40401675 | -10.21 | -0.1480 | SGSM3 | ENST00000248929 | Frame-shift | ENSG00000273893 | ENST00000610430 | exon_skip_153767 | chr17:48057031-48057121 | -13.06 | -0.2464 | NFE2L1 | ENST00000362042 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000273893.1 | ENST00000610430.1 | 90 | 322 | 591 |
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