 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | MCTS1,PSMD8,ATP6V0D1,HSPA8,GET3,LAMTOR2,PLIN3,ATOX1,COX6B1,EMC3,GSTO1,RHOG,SKP1,CORO1C,CD63,AVEN,ATP6V1H,GAPDH,CLPP,SQOR,NOP10,DBI,TMSB10,ORMDL2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000272153 | ENST00000607459 | exon_skip_377198 | chr3:123130479-123130616 | -17.12 | -0.1695 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_41841 | chr10:68756272-68756483 | -23.79 | -0.1208 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_111863 | chr14:23565815-23565892 | -16.71 | -0.2170 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_327433 | chr2:86125794-86125880 | -6.80 | -0.1308 | PTCD3 | ENST00000254630 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_327748 | chr2:95410863-95411026 | -20.12 | -0.1273 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_382458 | chr3:38131595-38131638 | -11.61 | -0.2764 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_23423 | chr1:26294204-26294331 | -17.10 | -0.1449 | UBXN11 | ENST00000374221,ENST00000374222 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_41813 | chr10:68337857-68337996 | -19.19 | -0.1411 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_95407 | chr12:95040475-95040597 | -15.54 | -0.1554 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_114365 | chr14:74290026-74290118 | -12.51 | -0.1422 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_138351 | chr16:70469151-70469323 | -25.69 | -0.1875 | FUK | ENST00000288078 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_139933 | chr16:90035632-90035687 | -8.17 | -0.1571 | GAS8 | ENST00000268699 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_340759 | chr2:85552415-85552567 | -17.88 | -0.1344 | GGCX | ENST00000233838 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_370518 | chr22:50247691-50247776 | -14.10 | -0.1699 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_374551 | chr3:50100531-50100605 | -12.41 | -0.1773 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_442657 | chr5:74730259-74730398 | -15.32 | -0.1344 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_8541 | chr1:109657589-109657671 | -13.43 | -0.1815 | GSTM4 | ENST00000369836 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_53559 | chr10:101793912-101793998 | -13.03 | -0.1589 | OGA | ENST00000361464 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_66482 | chr11:126274926-126275021 | -11.96 | -0.1272 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_127618 | chr15:58890280-58890461 | -16.27 | -0.1077 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_133217 | chr16:8635038-8635079 | -11.47 | -0.2868 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_139422 | chr16:89114338-89114487 | -24.44 | -0.2003 | ACSF3 | ENST00000317447,ENST00000406948 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_290158 | chr17:42953723-42953778 | -9.93 | -0.1910 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_300663 | chr19:1425877-1425960 | -10.22 | -0.1262 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_302168 | chr19:10680345-10680443 | -10.47 | -0.1151 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_326885 | chr2:74490024-74490127 | -16.94 | -0.2289 | TTC31 | ENST00000233623 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_333962 | chr2:219247112-219247246 | -16.47 | -0.2085 | STK16 | ENST00000396738,ENST00000409638 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_365497 | chr22:38067703-38067770 | -12.06 | -0.7538 | PICK1 | ENST00000356976,ENST00000404072 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_370525 | chr22:50250426-50250523 | -14.45 | -0.4661 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_374497 | chr3:49999439-49999513 | -12.71 | -0.2017 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_444499 | chr5:138164086-138164133 | -5.22 | -0.2088 | BRD8 | ENST00000254900 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_462144 | chr6:125298713-125298816 | -14.23 | -0.1514 | HDDC2 | ENST00000398153 | Frame-shift | | ENSG00000272153 | ENST00000607459 | exon_skip_470226 | chr7:103307595-103307708 | -10.24 | -0.1045 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000272153.1 | ENST00000607459.1 | 102 | 356 | 48 |
|
