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lncRNA: ENSG00000271816

Summary for BMS1P4

Gene summary

Gene information	Ensembl ID	ENSG00000271816
	Gene symbol	BMS1P4
	Gene name
	HGNC
	Entrez ID	729096
	Gene type	processed_transcript
	Synonyms
	UniProtAcc

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Structure and expression level for BMS1P4

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for BMS1P4

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for BMS1P4

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for BMS1P4

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for BMS1P4

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID	LncRNA Name	SNP info	Number of Positive corelated Cancer	Positive corelated Cancer	Number of Negative corelated Cancer	Negative corelated Cancer
ENSG00000271816	BMS1P4	rs28553894:75489843:C:A	1	THCA	0
ENSG00000271816	BMS1P4	rs28718766:75489844:C:A	1	THCA	0
ENSG00000271816	BMS1P4	rs10824031:75509273:C:T	1	THCA	0
ENSG00000271816	BMS1P4	rs7076525:75512797:C:T	1	THCA	0
ENSG00000271816	BMS1P4	rs12253482:75496130:G:A	1	THCA	0
ENSG00000271816	BMS1P4	rs144390797:75568311:TAG:T	1	THCA	0
ENSG00000271816	BMS1P4	rs12775558:75570868:G:A	1	THCA	0
ENSG00000271816	BMS1P4	rs60276651:75559662:C:CTCTA	1	THCA	0
ENSG00000271816	BMS1P4	rs10824032:75528130:G:A	1	THCA	0
ENSG00000271816	BMS1P4	rs6480709:75479125:T:C	1	THCA	0
ENSG00000271816	BMS1P4	rs10128354:75470045:T:C	1	THCA	0
ENSG00000271816	BMS1P4	rs145929404:75532848:GCCAGGACTCCAGGTGTCCAGGACTCCAGGTGT:G	1	THCA	0
ENSG00000271816	BMS1P4	rs66882239:75468870:GT:G	1	THCA	0
ENSG00000271816	BMS1P4	rs10762563:75524802:C:A	1	THCA	0
ENSG00000271816	BMS1P4	rs7908825:75554541:C:G:-	0		1	THCA
ENSG00000271816	BMS1P4	rs35611463:75571204:C:CG	1	THCA	0
ENSG00000271816	BMS1P4	rs11000767:75516626:G:T	1	THCA	0
ENSG00000271816	BMS1P4	rs7072988:75497515:T:C	1	THCA	0
ENSG00000271816	BMS1P4	rs7080579:75504029:T:A	1	THCA	0
ENSG00000271816	BMS1P4	rs141895849:75505306:C:CTTTATTT	1	THCA	0
ENSG00000271816	BMS1P4	rs28736827:75489721:C:T	1	THCA	0
ENSG00000271816	BMS1P4	rs10762560:75495405:T:G	1	THCA	0
ENSG00000271816	BMS1P4	rs11000758:75493610:A:T	1	THCA	0
ENSG00000271816	BMS1P4	rs7076585:75503692:T:C	1	THCA	0
ENSG00000271816	BMS1P4	rs11000760:75493734:G:A	1	THCA	0
ENSG00000271816	BMS1P4	rs11000759:75493726:G:A	1	THCA	0
ENSG00000271816	BMS1P4	rs13013:75562161:C:A	1	THCA	0
ENSG00000271816	BMS1P4	rs11814282:75490217:T:C	1	THCA	0
ENSG00000271816	BMS1P4	rs12264025:75494450:A:G	1	THCA	0
ENSG00000271816	BMS1P4	rs10683714:75494638:A:ACT	1	THCA	0
ENSG00000271816	BMS1P4	rs12253429:75496161:C:G	1	THCA	0
ENSG00000271816	BMS1P4	rs12253408:75495956:G:T	1	THCA	0
ENSG00000271816	BMS1P4	rs3870406:75474261:C:T	1	THCA	0
ENSG00000271816	BMS1P4	rs71507081:75493136:G:A	1	THCA	0
ENSG00000271816	BMS1P4	rs11000755:75472218:G:A	1	THCA	0
ENSG00000271816	BMS1P4	rs2894040:75478159:A:C	1	THCA	0
ENSG00000271816	BMS1P4	rs2127365:75478824:A:G	1	THCA	0
ENSG00000271816	BMS1P4	rs3849967:75483366:C:T	1	THCA	0
ENSG00000271816	BMS1P4	rs7909802:75484186:G:C	1	THCA	0
ENSG00000271816	BMS1P4	rs150352103:75473052:G:A	1	THCA	0
ENSG00000271816	BMS1P4	rs3933085:75483331:C:T	1	THCA	0
ENSG00000271816	BMS1P4	rs7909544:75484004:G:C	1	THCA	0
ENSG00000271816	BMS1P4	rs10128205:75469648:C:G	1	THCA	0
ENSG00000271816	BMS1P4	rs10762557:75471750:T:C	1	THCA	0
ENSG00000271816	BMS1P4	rs11000757:75486815:T:C	1	THCA	0
ENSG00000271816	BMS1P4	rs12766737:75485321:T:A	1	THCA	0
ENSG00000271816	BMS1P4	rs10762559:75486453:G:C	1	THCA	0
ENSG00000271816	BMS1P4	rs7923045:75487498:A:T:+	1	THCA	0
ENSG00000271816	BMS1P4	rs7080350:75577843:A:G:+	0		1	THCA
ENSG00000271816	BMS1P4	rs12262649:75576366:C:T	1	THCA	0
ENSG00000271816	BMS1P4	rs12262650:75576374:C:A	1	THCA	0
ENSG00000271816	BMS1P4	rs2306328:75579510:C:T	1	THCA	0
ENSG00000271816	BMS1P4	rs7098444:75580042:C:T	1	THCA	0
ENSG00000271816	BMS1P4	rs7394152:75421446:C:T	0		1	THCA
ENSG00000271816	BMS1P4	rs78249997:75422314:C:T	0		1	THCA
ENSG00000271816	BMS1P4	rs4745719:75430001:A:G	1	THCA	0
ENSG00000271816	BMS1P4	rs7900932:75420570:T:C	0		1	THCA
ENSG00000271816	BMS1P4	rs7394178:75421580:G:A	0		1	THCA
ENSG00000271816	BMS1P4	rs7915134:75420180:C:T	0		1	THCA
ENSG00000271816	BMS1P4	rs2675662:75599127:A:G	0		1	THCA
ENSG00000271816	BMS1P4	rs60632610:75415677:C:T	0		1	THCA
ENSG00000271816	BMS1P4	rs2633310:75594050:G:T	0		1	THCA
ENSG00000271816	BMS1P4	rs6480708:75420114:C:A	0		1	THCA
ENSG00000271816	BMS1P4	rs60212594:75414344:G:C	0		1	THCA
ENSG00000271816	BMS1P4	rs11000734:75419663:T:G	0		1	THCA
ENSG00000271816	BMS1P4	rs10824026:75421208:A:G:+	0		1	THCA
ENSG00000271816	BMS1P4	rs148321568:75428296:A:T	0		1	THCA
ENSG00000271816	BMS1P4	rs4746140:75417249:G:C	0		1	THCA
ENSG00000271816	BMS1P4	rs12570126:75416789:C:T:-	1	THCA	0

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000271816.1	ENST00000580790.1	647	1562	3505

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential