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lncRNA: ENSG00000271452

Summary for RP11-342K6.2

Gene summary

Gene information	Ensembl ID	ENSG00000271452
	Gene symbol	RP11-342K6.2
	Gene name
	HGNC
	Entrez ID
	Gene type	sense_intronic
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-342K6.2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000271452	4.878920e-01	6.746203e-04	CHOL	1.252441e-03
ENSG00000271452	-5.322146e-01	7.974216e-08	KICH	3.197621e-07

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lncRNA-Protein interaction for RP11-342K6.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000173473	SMARCC1	110.22	94.4507	Q92922	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000067369	TP53BP1	104.1	93.2243	Q12888	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000077097	TOP2B	101.33	93.1485	Q02880	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000168137	SETD5	93.53	91.3348	Q9C0A6	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000146247	PHIP	92.25	96.3254	Q8WWQ0	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000118058	KMT2A	85.28	97.6557	Q03164	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000171316	CHD7	82.55	95.0389	Q9P2D1	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000196199	MPHOSPH8	81.8	93.5031	Q99549	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000181090	EHMT1	81.45	95.9833	Q9H9B1	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000085224	ATRX	78.65	97.2068	P46100	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000067066	SP100	78.42	92.8511	P23497	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000185658	BRWD1	77.93	97.0458	Q9NSI6	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000101040	ZMYND8	74.52	95.2075	Q9ULU4	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000124177	CHD6	73.21	96.0753	Q8TD26	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000107077	KDM4C	72.87	92.8905	Q9H3R0	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000141027	NCOR1	71.92	95.489	O75376	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000187605	TET3	69.48	94.9472	O43151	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000183337	BCOR	69.02	94.3126	Q6W2J9	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000036549	ZZZ3	68.67	90.3596	Q8IYH5	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000147133	TAF1	68.41	94.2032	P21675	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000077684	JADE1	67.65	90.2789	Q6IE81	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000171634	BPTF	64.01	97.3953	Q12830	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000139613	SMARCC2	63.02	95.1052	Q8TAQ2	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000146872	TLK2	60.54	94.3029	Q86UE8	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000140396	NCOA2	59.9	94.2354	Q15596	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000182568	SATB1	59.85	93.6687	Q01826	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000134852	CLOCK	58.87	94.1325	O15516	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000167548	KMT2D	57.67	96.8772	O14686	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000094631	HDAC6	57.44	91.5455	Q9UBN7	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000198646	NCOA6	54.35	94.9073	Q14686	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000197323	TRIM33	48.47	92.5682	Q9UPN9	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000163635	ATXN7	47.97	93.433	O15265	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000272333	KMT2B	47.48	94.1281	Q9UMN6	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000156650	KAT6B	35.75	96.1478	Q8WYB5	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000108468	CBX1	6.62	91.8132	P83916	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000094916	CBX5	4.74	92.0338	P45973	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000117625	RCOR3	3.95	93.869	Q9P2K3	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000187325	TAF9B	3.67	90.0533	Q9HBM6	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000141644	MBD1	2.0	90.582	Q9UIS9	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000096070	BRPF3	113.77	91.7668	Q9ULD4	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000123636	BAZ2B	108.55	93.9037	Q9UIF8	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000198604	BAZ1A	105.13	93.2073	Q9NRL2	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000025293	PHF20	104.77	90.3899	Q9BVI0	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000119772	DNMT3A	101.06	93.0162	Q9Y6K1	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000080503	SMARCA2	99.62	94.965	P51531	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000032219	ARID4A	92.96	95.7431	P29374	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000054267	ARID4B	91.76	94.9365	Q4LE39	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000092201	SUPT16H	91.01	91.8132	Q9Y5B9	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000171681	ATF7IP	87.77	96.423	Q6VMQ6	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000181555	SETD2	85.37	90.64	Q9BYW2	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000005483	KMT2E	83.04	95.1028	Q8IZD2	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000227345	PARG	82.51	92.5282	Q86W56	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000165671	NSD1	82.46	95.5533	Q96L73	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000275023	MLLT6	82.26	93.7588	P55198	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000145241	CENPC	82.21	92.4392	Q03188	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000170004	CHD3	81.4	91.4149	Q12873	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000108557	RAI1	79.88	95.1498	Q7Z5J4	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000111642	CHD4	78.84	94.3105	Q14839	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000165288	BRWD3	77.93	95.9053	Q6RI45	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000005339	CREBBP	77.39	96.7749	Q92793	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000066135	KDM4A	76.87	90.6823	O75164	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000100393	EP300	76.49	96.6026	Q09472	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000106443	PHF14	75.77	93.9118	O94880	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000129292	PHF20L1	75.46	91.0481	A8MW92	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000169375	SIN3A	75.33	93.091	Q96ST3	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000116539	ASH1L	73.04	95.9398	Q9NR48	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000103549	RNF40	72.64	94.7825	O75150	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000008083	JARID2	72.6	93.9295	Q92833	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000055609	KMT2C	72.37	97.2853	Q8NEZ4	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000164190	NIPBL	70.01	97.4076	Q6KC79	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000138376	BARD1	69.6	91.2394	Q99728	RBP,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000084676	NCOA1	68.18	95.8452	Q15788	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000078403	MLLT10	67.11	95.7823	P55197	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000076108	BAZ2A	67.02	95.8233	Q9UIF9	TF,RBP,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000143970	ASXL2	66.66	91.2661	Q76L83	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000012048	BRCA1	66.42	91.833	P38398	RBP,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000173889	PHC3	65.19	90.0923	Q8NDX5	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000115548	KDM3A	65.1	91.5179	Q9Y4C1	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000168769	TET2	63.42	96.6117	Q6N021	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000204256	BRD2	62.78	92.7324	P25440	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000106829	TLE4	60.75	94.6619	Q04727	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000084093	REST	60.24	94.8692	Q13127	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000055483	USP36	59.66	93.3215	Q9P275	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000189079	ARID2	57.51	92.014	Q68CP9	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000137337	MDC1	56.53	95.6319	Q14676	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000183495	EP400	55.55	96.9049	Q96L91	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000083168	KAT6A	51.27	95.9987	Q92794	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000102974	CTCF	50.03	94.3476	P49711	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000085185	BCORL1	49.28	94.2039	Q5H9F3	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000119638	NEK9	45.92	93.7419	Q8TD19	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000124151	NCOA3	44.33	93.055	Q9Y6Q9	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000120071	KANSL1	40.71	93.4398	Q7Z3B3	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000043143	JADE2	36.9	90.9023	Q9NQC1	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000171456	ASXL1	36.73	95.5763	Q8IXJ9	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000111676	ATN1	34.15	90.0918	P54259	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000150907	FOXO1	29.68	93.3595	Q12778	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000131263	RLIM	15.42	92.5521	Q9NVW2	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000087152	ATXN7L3	3.92	94.1055	Q14CW9	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000163602	RYBP	3.82	92.2139	Q8N488	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000164985	PSIP1	2.74	94.9565	O75475	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000117222	RBBP5	2.23	92.8371	Q15291	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000163961	RNF168	1.52	91.2952	Q8IYW5	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000163605	PPP4R2	1.32	90.7506	Q9NY27	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000168283	BMI1	0.88	91.0744	P35226	Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000073584	SMARCE1	0.28	92.2356	Q969G3	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000123636	BAZ2B	108.55	93.4287	Q9UIF8	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000102189	EEA1	106.4	95.0223	Q15075	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000118058	KMT2A	85.28	97.2587	Q03164	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000085276	MECOM	84.72	94.1651	Q03112	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000100207	TCF20	78.52	96.5259	Q9UGU0	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000067066	SP100	78.42	93.2035	P23497	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000080298	RFX3	78.11	92.4992	P48380	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000104447	TRPS1	77.31	92.6693	Q9UHF7	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000117707	PROX1	76.06	92.3346	Q92786	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000181827	RFX7	75.55	90.8045	Q2KHR2	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000105127	AKAP8	74.62	91.2273	O43823	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000198205	ZXDA	74.47	93.1027	P98168	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000116539	ASH1L	73.04	95.92	Q9NR48	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000134874	DZIP1	71.56	93.1226	Q86YF9	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000196867	ZFP28	71.54	94.4916	Q8NHY6	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000187605	TET3	69.48	94.0833	O43151	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000084676	NCOA1	68.18	95.4515	Q15788	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000125482	TTF1	67.62	90.5713	Q15361	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000076108	BAZ2A	67.02	95.1941	Q9UIF9	TF,RBP,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000147124	ZNF41	65.44	94.1904	P51814	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000171634	BPTF	64.01	96.2486	Q12830	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000198455	ZXDB	63.84	93.3066	P98169	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000168769	TET2	63.42	96.0251	Q6N021	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000005889	ZFX	62.22	92.8625	P17010	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000084093	REST	60.24	94.474	Q13127	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000140396	NCOA2	59.9	93.6783	Q15596	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000182568	SATB1	59.85	93.1128	Q01826	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000167232	ZNF91	58.96	94.3249	Q05481	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000134852	CLOCK	58.87	93.2788	O15516	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000189079	ARID2	57.51	91.1866	Q68CP9	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000117000	RLF	53.49	96.3526	Q13129	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000126464	PRR12	52.61	92.8034	Q9ULL5	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000196670	ZFP62	51.59	92.0306	Q8NB50	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000106571	GLI3	50.73	96.1346	P10071	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000102974	CTCF	50.03	92.0216	P49711	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000126804	ZBTB1	49.96	93.3528	Q9Y2K1	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000125812	GZF1	47.64	91.7152	Q9H116	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000272333	KMT2B	47.48	93.49	Q9UMN6	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000140836	ZFHX3	46.38	96.2658	Q15911	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000165821	SALL2	46.27	90.8786	Q9Y467	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000114439	BBX	45.57	93.4429	Q8WY36	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000198040	ZNF84	44.68	91.4126	P51523	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000146587	RBAK	44.61	92.2892	Q9NYW8	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000124151	NCOA3	44.33	92.0997	Q9Y6Q9	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000188786	MTF1	43.95	93.8302	Q14872	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000168795	ZBTB5	37.3	91.8855	O15062	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000150907	FOXO1	29.68	91.4842	Q12778	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000126705	AHDC1	29.57	93.385	Q5TGY3	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000120690	ELF1	23.37	90.645	P32519	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000118689	FOXO3	21.91	90.4778	O43524	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000109381	ELF2	17.31	90.9942	Q15723	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000184939	ZFP90	16.76	90.0819	Q8TF47	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000185129	PURA	11.5	93.5212	Q00577	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000204304	PBX2	11.34	90.8812	P40425	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000136504	KAT7	10.42	91.0814	O95251	TF,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000169981	ZNF35	3.8	93.1578	P13682	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000171649	ZIK1	3.41	91.5262	Q3SY52	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000181472	ZBTB2	3.19	90.884	Q8N680	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000186130	ZBTB6	2.48	90.9281	Q15916	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000275111	ZNF2	1.66	91.3833	Q9BSG1	TF	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000114126	TFDP2	0.8	94.3624	Q14188	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000056097	ZFR	106.33	92.3574	Q96KR1	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000096401	CDC5L	94.9	91.357	Q99459	TF,RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000163510	CWC22	86.06	91.4506	Q9HCG8	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000004534	RBM6	81.32	92.7426	P78332	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000213079	SCAF8	78.0	91.846	Q9UPN6	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000198000	NOL8	74.67	94.7232	Q76FK4	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000106344	RBM28	72.46	92.8958	Q9NW13	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000137776	SLTM	70.81	91.3124	Q9NWH9	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000076108	BAZ2A	67.02	95.5585	Q9UIF9	TF,RBP,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000012048	BRCA1	66.42	91.8911	P38398	RBP,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000125676	THOC2	65.82	91.8029	Q8NI27	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000162775	RBM15	62.19	93.337	Q96T37	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000135870	RC3H1	50.57	94.6074	Q5TC82	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000156304	SCAF4	43.21	94.108	O95104	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000133226	SRRM1	32.87	95.1785	Q8IYB3	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000083544	TDRD3	30.36	90.6536	Q9H7E2	RBP,Epi	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000102081	FMR1	28.15	90.0785	Q06787	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000114416	FXR1	25.02	90.4961	P51114	RBP	High-throughput data combine LncPro prediction
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000167978	SRRM2	24.11	97.4233	Q9UQ35	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000131013	PPIL4	21.52	91.7176	Q8WUA2	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000145907	G3BP1	18.39	92.6818	Q13283	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000108349	CASC3	15.42	93.0795	O15234	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000138757	G3BP2	14.99	90.6036	Q9UN86	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000107164	FUBP3	3.5	91.523	Q96I24	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000149532	CPSF7	2.42	92.8945	Q8N684	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000111605	CPSF6	2.11	94.6023	Q16630	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000155858	LSM11	1.46	90.1607	P83369	RBP	ENCODE
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000174720	LARP7	1.38	92.3866	Q4G0J3	RBP	NA
ENSG00000271452	ENST00000604219	RP11-342K6.2	ENSG00000173744	AGFG1	0.41	91.8418	P52594	RBP	NA

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lncRNA-DNA interaction for RP11-342K6.2

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-342K6.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

TECR,PAXX,ATOX1,FTL,ANAPC11,PIN1,GALE,TADA3,FPGS,EDF1,CLPP,CCDC159,TOMM7,RPL35A,GNPTG,TRAPPC6A,ALKBH2,C4orf48,MRPL43,MYG1,STX10,SLIRP,TSR3,PSMA4,DHRS4L2,CHMP4B,TIMM10,COPE,EMP3,MVP,NDUFB9,ARRB2,HSCB,UBALD2,MRPL41,RNASEH2C,PPDPF,NDUFA12,UFD1,NDUFV1,NDUFC1,MCTS1,HMOX2,AP1M1,WDR74,SLC50A1,NMRAL1,EMC3,HRAS,GSTO1,SMCO4,RPL32,ACD,PTMS,RPSA,DEDD2,NDUFS6,MRPL4,SHKBP1,MMAB,NOSIP,SAC3D1,IPO4,NAA10,PAF1,FLYWCH2,TRPT1,ATP5PF,PEX16,NR1H2,PSMD8,NDUFS8,TMEM258,NDUFS7,PQBP1,HES4,BORCS8,COX7A2,TRAPPC2L,SLC39A3,PFDN6,NDUFC2,PSMB3,CRB3,TXNRD2,FKBP2,NDUFB8,GFUS,KIF22,E4F1,GEMIN7,TMEM147,DPP7,REX1BD,SMIM12,DDT,NUDT22,ENDOG,RPL36A,UXT,TMEM179B,AURKAIP1,RFXANK,ALDOA,BLOC1S1,ATP5PO,SLC25A11,NUDT16L1,UROD,MAD2L2,TMEM53,BCL2L12,R3HCC1,FAM234A,RUVBL2,LGALS3,YPEL3,TMUB1,ACOT8,SERF2,ATP5ME,DTX2,NDUFA2,SDHAF2,ISY1,DCXR,TOM1,RPL35,PNKP,SNRPD2,H2AJ,DGAT1,NDUFA11,CAPNS1,TMEM208,C12orf45,CNPY2,FKBP8,RHOG,RPS17,UBXN1,RPS11,C1orf54,PYCARD,ZFYVE19,ATP5PD,ERCC1,RHOT2,NDUFB1,NFKBIE,SQOR,FZR1,LAGE3,FUOM,HDAC10,RBM42,AHSA1,DNASE2,C11orf24,TMEM222,WDR18,NDUFB4,ELOB,RPS21,MRPL47,CDK5,ARSA,ZNHIT2,MRTO4,GUK1,NDUFAF2,DPM2,IDH3G,SURF2,RABAC1,BSG,NUDT14,CLTA,VEGFB,NANS,JMJD8,AGAP3,TRMT112,ADCK5,GCDH,USF1,SDSL,NXT1,ATP5F1D,COX8A,OTUB1,COX7C,NTMT1,COX5A,PPP1R35,EIF3K,FAM162A,TAF10,LSM7,EPN1,MRPS15,ATP5MF,NFKBIB,METTL26,FDX2,NDUFA6,TBCA,DNAJC4,FIBP,AIF1,CDC37,ERH,NUDT8,FBXL15,PEX14,GSTZ1,CHID1,CDC34,CCDC61,PTOV1,ATP6V0B,BABAM1,CTU2,PPIH,NME1,RPL13A,POLRMT,THAP7,STYXL1,LGALS1,DYRK4,TFPT,RAB4B,YIF1A,GPX4,ATP6V0D1,USE1,FAM174C,STXBP2,ATP5MC2,PSMB10,ALG3,MICOS13,VMO1,PFDN5,SMIM22,SIVA1,MRPL55,ROMO1,ALKBH4,NDUFB10,C8orf82,COMTD1,RAB25,HCST,RNH1,PLEKHJ1,PDCD5,CST3,RABEP2,MPND,COX6C,LIN7B,SGF29,ATP6V0E1,NDUFB11,VKORC1,TSSC4,AIP,IRF3,RPS6,NOP16,NCLN,EMC9,ORMDL2,OXLD1,POLR2I,MED11,MRPL52,RPL10,FASTK,MFSD3,ZFAND2A,COPS6,UBA52,RACK1,ALKBH7,LST1,TXNL4A,TMEM219,NDUFB7,PPIA,CCS,PPCDC,STX4,NDUFAF3,MSRB1,KRT8,TP53I13,MPG,HAGH,PAM16,SLC27A5,NDUFA13,CCDC88B,THOC6,PET100,CRELD2,CORO7,SURF1,DDX49,CHCHD10,EGLN2,SRA1,TMEM160,RANBP1,DUS1L,UPP1,BCAT2,CCNQ,ABHD11,RALY,NOP53,SIL1,ANTKMT,MOSPD3,ARHGDIA,SCAND1,ZNRD2,COX6B1,UQCRC1,PSMC3,DECR2,TOLLIP,NAPRT,THOP1,BAD,CKLF,ECSIT,USF2,EMC10,SELENOH,TEDC1,ELP6,ATP5MK,DPM3,MED16,BLVRB,GIPC1,C11orf98,TYROBP,MCRIP1,CAPG,LMF2,TXN2,FAM32A,DAD1,PSME2,QTRT1,SNRPB,NAA60,PRDX5,EIF3G,CINP,HSPE1,ECI1,GPR137,PFDN2,NDUFS3,COA4,SSBP1,NME4,PIH1D1,SSR4,P4HB,NAXE,SIGIRR,CIAO2B,CENPM,RPS13,CD2BP2,STAP2,ATP5MC1,CFL1,HOMER3,DCTN3,NOC4L,CCDC85B,PSMC4,UBE2S,TMEM126A,POLR2E,SMIM29,RNF7,SMUG1,PRR14,PPAN,RPS23,TIMM8B,IFI27L2,NUDT1,CD63,ETFB,KLF16,NR2C2AP,ABHD12,OCEL1,COMMD4,NDUFA3,HCFC1R1,TMEM134,SMIM4,SWI5,SNU13

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000271452	ENST00000604219	exon_skip_460899	chr6:85538837-85538864	-4.17	-0.1604	SNX14	ENST00000314673	In-frame
ENSG00000271452	ENST00000604219	exon_skip_1717	chr1:15721328-15721388	-7.47	-0.1437	PLEKHM2	ENST00000375799	In-frame
ENSG00000271452	ENST00000604219	exon_skip_462554	chr6:136267028-136267175	-6.09	-0.1603	BCLAF1	ENST00000531224	In-frame
ENSG00000271452	ENST00000604219	exon_skip_363747	chr22:23877720-23877869	-13.43	-0.1199	SLC2A11	ENST00000345044	Frame-shift

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-342K6.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000271452.1	ENST00000604219.1	92	910	632

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential