 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | PNO1,CPSF2,SMAD1,CPEB4,DDX3X,RBM7,AGFG1,SF3A1,SP100,UNC50,RTCA | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000268836 | ENST00000595428 | exon_skip_9446 | chr1:147270931-147271005 | -9.88 | -0.1372 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_41813 | chr10:68337857-68337996 | -19.85 | -0.1711 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_53559 | chr10:101793912-101793998 | -12.82 | -0.1623 | OGA | ENST00000361464 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_87733 | chr12:120571190-120571291 | -13.98 | -0.2796 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_95500 | chr12:96003837-96003920 | -8.59 | -0.1591 | LTA4H | ENST00000228740 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_110959 | chr14:20372732-20372857 | -14.52 | -0.1396 | TEP1 | ENST00000262715 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_290158 | chr17:42953723-42953778 | -9.09 | -0.3367 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_302168 | chr19:10680345-10680443 | -11.99 | -0.1236 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_313557 | chr19:5786748-5786845 | -13.63 | -0.1747 | DUS3L | ENST00000309061 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_319223 | chr19:43526200-43526349 | -15.83 | -0.1308 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_324294 | chr2:27774423-27774530 | -10.66 | -0.1035 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_335558 | chr2:240596680-240596942 | -24.39 | -0.1104 | CAPN10 | ENST00000391984 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_370518 | chr22:50247691-50247776 | -14.63 | -0.1806 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_377198 | chr3:123130479-123130616 | -18.85 | -0.1611 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_382458 | chr3:38131595-38131638 | -8.51 | -0.2364 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_470226 | chr7:103307595-103307708 | -12.22 | -0.1260 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_511212 | chrX:71555189-71555385 | -15.42 | -0.1214 | OGT | ENST00000373719 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_374581 | chr3:50110378-50110463 | -11.37 | -0.1458 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_52671 | chr10:97461495-97461622 | -15.92 | -0.1592 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | | ENSG00000268836 | ENST00000595428 | exon_skip_445390 | chr5:150403120-150403312 | -20.57 | -0.1169 | CD74 | ENST00000009530 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000268836.1 | ENST00000595428.1 | 119 | 444 | 800 |
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