 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | MDH2,SORD,TMBIM6,RNH1,HTATIP2,ATP5F1B,PPIF,DHTKD1,SDHD,EIF3L,PNPO,PLEKHB2,MAIP1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000268516 | ENST00000597230 | exon_skip_382458 | chr3:38131595-38131638 | -11.80 | -0.2744 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000268516 | ENST00000597230 | exon_skip_442657 | chr5:74730259-74730398 | -15.40 | -0.1252 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58259327-58259422 | 183.00 | -75.44 | 94 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58258032-58258121 | 177.00 | -80.08 | 91 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58257789-58257867 | 173.00 | -67.72 | 80 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58258254-58258347 | 170.00 | -81.80 | 78 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58259005-58259098 | 163.00 | -81.04 | 87 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58258354-58258441 | 162.00 | -63.76 | 88 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58257620-58257707 | 159.00 | -75.95 | 88 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58259701-58259782 | 159.00 | -67.51 | 83 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58257325-58257408 | 149.00 | -85.42 | 82 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58257435-58257512 | 149.00 | -84.25 | 80 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58259216-58259298 | 148.00 | -79.22 | 82 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58259459-58259547 | 148.00 | -74.12 | 81 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58259548-58259641 | 148.00 | -72.96 | 93 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58257516-58257610 | 147.00 | -73.53 | 93 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58259823-58259917 | 146.00 | -73.05 | 93 | NA | | ENSG00000268516 | hsa-mir-22 | ENST00000597230 | chr19:58258123-58258220 | 141.00 | -79.68 | 93 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58259648-58259745 | 200.00 | -81.00 | 100 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58257733-58257835 | 191.00 | -74.16 | 98 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58257876-58257982 | 182.00 | -72.82 | 107 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58258130-58258236 | 182.00 | -85.98 | 108 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58257491-58257588 | 177.00 | -84.96 | 100 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58259191-58259289 | 173.00 | -82.68 | 80 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58258246-58258334 | 171.00 | -75.19 | 96 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58259741-58259836 | 170.00 | -74.56 | 94 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58257608-58257707 | 163.00 | -83.74 | 92 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58259455-58259556 | 163.00 | -82.11 | 99 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58259017-58259113 | 161.00 | -80.99 | 100 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58257271-58257359 | 153.00 | -89.84 | 83 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58258920-58259011 | 147.00 | -78.57 | 95 | NA | | ENSG00000268516 | hsa-mir-582 | ENST00000597230 | chr19:58258371-58258482 | 145.00 | -85.29 | 105 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58259491-58259560 | 199.00 | -62.82 | 54 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58257424-58257489 | 170.00 | -75.98 | 68 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58258244-58258314 | 165.00 | -62.56 | 65 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58257837-58257903 | 161.00 | -59.82 | 63 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58258558-58258624 | 155.00 | -61.02 | 60 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58259172-58259245 | 153.00 | -62.89 | 57 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58258693-58258759 | 151.00 | -60.78 | 66 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58258753-58258819 | 147.00 | -63.13 | 66 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58258888-58258953 | 147.00 | -70.49 | 59 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58258089-58258153 | 146.00 | -61.91 | 66 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58259047-58259110 | 146.00 | -58.49 | 64 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58258456-58258521 | 142.00 | -57.28 | 63 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58258631-58258699 | 142.00 | -58.23 | 68 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58257305-58257367 | 140.00 | -67.60 | 64 | NA | | ENSG00000268516 | hsa-mir-378a | ENST00000597230 | chr19:58257763-58257831 | 140.00 | -56.40 | 65 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | | ENSG00000268516 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,UCS,TGCT,THCA |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,PPIH | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,WDR33 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,C1orf35 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,CERS5 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,DAXX | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ATAT1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,USP21 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,RBM8A | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,C12orf76 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,NRF1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,INAVA | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,BRD2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ILKAP | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,FAM117B | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,UNK | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ACYP1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,RCE1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,RSBN1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,EHMT2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ERCC3 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,RAD52 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,POLR2H | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ING5 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,SAP30BP | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,CLK2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,PRPF38A | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,LUC7L2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,EYA3 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,SMPD4 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,XRCC1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,PTMA | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,STMN1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,UBE2E3 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,TSEN54 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,CRTC2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,SF3A3 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,NVL | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,RBMX | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,H3-3B | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ATG4B | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,MSL2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ARL16 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,CXXC1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,COPS7B | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,INTS11 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,RECQL5 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,SUMO2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,RGL2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,C14orf93 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,RBM14 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ANKS6 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,UBTF | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,PCIF1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,GGA3 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,UBXN11 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,BRD8 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,IRF3 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,FANCG | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,RBM22 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,NUP85 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,IQCB1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,KDM5B | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,MUTYH | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,CYTH2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ING4 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,LIG1 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,C11orf49 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,SRRT | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,ZMYM3 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,H3-3A | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,PGAP2 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,LMBR1L | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,CCDC14 | KICH,CHOL,UCS,KIRP,LIHC | | ENSG00000268516 | ZNF8-DT,hsa-mir-22,CCHCR1 | KICH,CHOL,UCS,KIRP,LIHC |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000268516.2 | ENST00000597230.2 | 117 | 18 | 371 |
|
