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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000266053

Summary for NDUFV2-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000266053

Gene symbol

NDUFV2-AS1

Gene nameNDUFV2 antisense RNA 1
HGNC

50826

Entrez ID

101927275

Gene typeantisense
SynonymsNDUFV2-AS1|18p11.22
UniProtAcc

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Structure and expression level for NDUFV2-AS1

check buttonDifferentially expressed gene analysis between cancer and normal samples.
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002660533.265559e-013.703120e-15PRAD3.005342e-14

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lncRNA-Protein interaction for NDUFV2-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000123636BAZ2B70.0594.1321Q9UIF8TF,EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000171681ATF7IP56.1393.6498Q6VMQ6EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000181555SETD254.8690.611Q9BYW2EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000005483KMT2E53.5694.9047Q8IZD2EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000145241CENPC53.1891.6968Q03188EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000165288BRWD350.3294.6952Q6RI45EpiPredict
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000055609KMT2C45.6195.7168Q8NEZ4EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000164190NIPBL44.496.1094Q6KC79EpiChIP-seq
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000078403MLLT1043.2894.8046P55197EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000108799EZH139.7993.1318Q92800EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000120071KANSL125.6992.3167Q7Z3B3EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000171456ASXL123.1492.7008Q8IXJ9EpiPredict
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000149929HIRIP313.4794.4901Q9BW71EpiPredict
ENSG00000266053ENST00000582375NDUFV2-AS1ENSG00000132780NASP77.2391.7737P49321EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000168137SETD570.690.8892Q9C0A6EpiPredict
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000146247PHIP68.8894.2967Q8WWQ0EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000132780NASP66.9891.9625P49321EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000185658BRWD158.1294.3163Q9NSI6EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000104885DOT1L48.6890.7162Q8TEK3TF,EpiPredict
ENSG00000266053ENST00000582375NDUFV2-AS1ENSG00000181555SETD273.8595.4968Q9BYW2EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000168137SETD560.5191.0212Q9C0A6EpiPredict
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000146247PHIP59.5394.9418Q8WWQ0EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000185658BRWD150.2695.7958Q9NSI6EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000107077KDM4C46.8490.5255Q9H3R0EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000104885DOT1L42.2192.2551Q8TEK3TF,EpiPredict
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000171634BPTF40.9395.2516Q12830TF,EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000120616EPC132.0292.6522Q9H2F5EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000197323TRIM3330.9792.1253Q9UPN9EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000117625RCOR321.1792.32Q9P2K3EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000083544TDRD318.8892.0679Q9H7E2RBP,EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000181555SETD263.7694.3159Q9BYW2EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000005483KMT2E61.5593.9547Q8IZD2EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000165288BRWD358.1993.2176Q6RI45EpiPredict
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000116539ASH1L54.7393.329Q9NR48TF,EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000164190NIPBL51.5494.571Q6KC79EpiChIP-seq
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000078403MLLT1050.1190.8902P55197EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000171456ASXL126.1990.0249Q8IXJ9EpiPredict

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000123636BAZ2B70.0594.146Q9UIF8TF,EpiNA
ENSG00000266053ENST00000582375NDUFV2-AS1ENSG00000105127AKAP864.5990.6161O43823TFNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000104885DOT1L42.2191.6178Q8TEK3TF,EpiPredict
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000171634BPTF40.9394.8832Q12830TF,EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000167232ZNF9137.693.1317Q05481TFNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000126804ZBTB131.4591.5865Q9Y2K1TFPredict
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000146587RBAK28.290.6034Q9NYW8TFNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000065029ZNF7622.8191.5064P36508TFNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000166526ZNF320.0790.2894P17036TFNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000177732SOX1214.191.5027O15370TFPredict
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000102908NFAT569.790.3171O94916TFChIP-seq,catRAPID
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000130254SAFB261.4991.5272Q14151TF,RBPPredict
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000105127AKAP855.0191.4413O43823TFNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000116539ASH1L54.7393.2073Q9NR48TF,EpiNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000104885DOT1L48.6890.8255Q8TEK3TF,EpiPredict
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000167232ZNF9143.7192.637Q05481TFNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000198040ZNF8432.9590.2801P51523TFNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000130254SAFB261.4991.4273Q14151TF,RBPPredict
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000004534RBM660.4891.4158P78332RBPPredict
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000106344RBM2853.5792.7247Q9NW13RBPNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000137776SLTM52.7593.3192Q9NWH9RBPNA
ENSG00000266053ENST00000583081NDUFV2-AS1ENSG00000135870RC3H137.3790.6747Q5TC82RBPPredict
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000106344RBM2846.4791.7161Q9NW13RBPNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000137776SLTM45.7293.1104Q9NWH9RBPNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000162775RBM1540.2493.0363Q96T37RBPiCLIP
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000135870RC3H132.4591.7207Q5TC82RBPPredict
ENSG00000266053ENST00000582375NDUFV2-AS1ENSG00000124193SRSF622.4491.5018Q13247RBPNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000083544TDRD318.8892.4524Q9H7E2RBP,EpiNA
ENSG00000266053ENST00000608008NDUFV2-AS1ENSG00000089280FUS16.9791.8526P35637RBPHITS-CLIP

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lncRNA-DNA interaction for NDUFV2-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for NDUFV2-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
ATP5F1B
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000266053ENST00000608008exon_skip_382458chr3:38131595-38131638-11.62-0.2767ACAA1ENST00000333167Frame-shift
ENSG00000266053ENST00000608008exon_skip_470226chr7:103307595-103307708-15.13-0.1739PMPCBENST00000249269Frame-shift

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for NDUFV2-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000266053.2ENST00000582375.111436380
ENSG00000266053.2ENST00000583081.11414231
ENSG00000266053.2ENST00000608008.177361128