lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | ENSG00000261229 | MTHFS | rs11636341:80207927:T:G | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs10519247:80208164:A:G:- | 0 | | 4 | PRAD,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs58745619:80208186:C:CTAA | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs3088265:80208377:G:A | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs12910053:80209174:C:T | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs11631272:80208341:G:A | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs11638928:80209714:A:G | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs8026997:80163022:C:T:+ | 5 | PRAD,HNSC,THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs6495455:80202833:T:C | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs6495456:80202906:C:T | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs1864240:80205310:A:C | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7174273:80205568:A:G | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs17885346:80205837:A:G | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs12915498:80172774:C:T:+ | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs28837525:80209908:C:T | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs28830831:80210032:G:C | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs28524544:80210328:C:T | 0 | | 4 | PRAD,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7179584:80213049:G:A | 0 | | 3 | PRAD,THCA,LGG | ENSG00000261229 | MTHFS | rs3178646:80213023:T:C | 0 | | 3 | PRAD,THCA,LGG | ENSG00000261229 | MTHFS | rs12951:80213031:C:T | 0 | | 3 | PRAD,THCA,LGG | ENSG00000261229 | MTHFS | rs16971581:80214708:T:G | 0 | | 3 | PRAD,THCA,LGG | ENSG00000261229 | MTHFS | rs584055:80126521:A:T | 5 | PRAD,HNSC,THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs622506:80139195:A:C | 5 | PRAD,HNSC,THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs67481680:80214566:T:C | 0 | | 5 | PRAD,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs6495452:80164088:T:C | 0 | | 4 | PRAD,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs642697:80121160:C:T | 5 | PRAD,HNSC,THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs4994245:80212143:C:A | 0 | | 4 | PRAD,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs4994246:80212149:C:A | 0 | | 4 | PRAD,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs4573897:80187225:G:A | 0 | | 2 | LUSC,THCA | ENSG00000261229 | MTHFS | rs4779163:80126260:A:G:+ | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs4779162:80126245:A:G:- | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs35404207:80130958:TA:T | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs11854561:80136772:A:G:- | 5 | LUSC,HNSC,THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs2115536:80194247:C:T:+ | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs34652312:80129288:C:T | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7180995:80124974:A:G | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs8042153:80125551:G:A | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62027960:80121949:T:C | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs12899012:80122599:G:A | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs60440244:80122613:CA:C | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs59743714:80122615:C:G | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs34567105:80122810:CTT:C | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs28445348:80122924:C:G | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs62027963:80123037:G:C | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs9888688:80123718:G:A | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs9888686:80123727:C:T | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs7175431:80124219:C:T | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs7177027:80124383:T:C | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs4238512:80183898:A:C:- | 1 | LUSC | 0 | | ENSG00000261229 | MTHFS | rs71453464:80129172:ATGGAGGATGGCC:A | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs4778727:80129742:C:A | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs4779164:80130202:G:A | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs34195307:80131044:T:G | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7174615:80131082:C:T | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs71453465:80131127:TCAAAAACAAAAA:T | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7175723:80131488:G:C | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs35919462:80131692:C:T | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs12903775:80131970:A:G | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs60843106:80132626:A:G | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs12904243:80132133:C:A | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7175620:80122418:T:C | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs76100877:80193882:GTA:G | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs11856431:80198784:A:G | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs12912880:80197396:G:C | 0 | | 4 | LUSC,HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs11637477:80193295:C:T | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs6495451:80164053:C:T | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs34375570:80189760:AG:A | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs11855732:80198438:G:A | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7257:80191343:G:A | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs2115540:80190308:A:G | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs7166155:80126583:A:G | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs34123440:80126615:C:T | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs5813998:80189453:G:GC | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs3826008:80189805:G:T | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs2903105:80189523:C:G | 0 | | 1 | LUSC | ENSG00000261229 | MTHFS | rs35144922:80127913:T:C | 0 | | 5 | LUSC,HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs55730276:80193606:G:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs72734776:80194045:A:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62028024:80194094:T:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs56173860:80199667:G:T | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62027997:80178652:T:C | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs8030291:80199405:A:T | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62028025:80195693:G:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs55664603:80184171:G:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62027992:80174492:G:A | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62027993:80175296:C:T | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs60269787:80176016:T:C | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs375489261:80168321:AAAAT:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62027990:80170638:G:A | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs141399187:80185085:G:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62028026:80203706:C:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs72736542:80206194:G:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62028027:80206213:C:T | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs17286040:80184983:C:T:+ | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62028020:80185687:T:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs72736553:80228175:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs34638170:80230331:A:G | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs62025486:80230557:T:C | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs79182819:80189398:C:T | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs57245941:80192918:T:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs146815544:80218038:TTTTG:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs77489183:80211875:G:A | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs60995187:80176295:C:T | 0 | | 4 | HNSC,BLCA,THCA,LGG | ENSG00000261229 | MTHFS | rs62025482:80222369:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs55789254:80211597:G:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs17286886:80215601:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs72736550:80220499:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs138289636:80210770:TG:T | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs117218282:80210772:C:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs58978967:80210947:G:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs8039272:80196750:T:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs11855622:80198198:C:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62025483:80222716:C:G | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs62025484:80222721:G:A | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs142028614:80223458:G:GTC | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs62027985:80147183:A:G | 0 | | 4 | HNSC,BLCA,THCA,LGG | ENSG00000261229 | MTHFS | rs4779165:80151013:A:G | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs7173130:80151907:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs62027986:80147936:G:A | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs62027987:80148220:T:C | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs141107808:80221943:TTTCC:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs9635381:80165143:A:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs72734752:80150080:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs6495446:80154982:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs7167420:80211413:C:A | 0 | | 4 | HNSC,BLCA,THCA,LGG | ENSG00000261229 | MTHFS | rs28589505:80127374:C:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62027983:80140735:T:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs8030396:80199249:A:G:+ | 4 | HNSC,THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs61669541:80145798:T:TCTC | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs2054287:80143035:T:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs4778729:80135259:C:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs10519253:80136462:A:T:- | 0 | | 4 | HNSC,BLCA,THCA,LGG | ENSG00000261229 | MTHFS | rs12900601:80185681:T:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs2054288:80143075:A:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs4778728:80129813:T:C | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs71874818:80189058:GCGTGCGCGCGCCGGGAGGGGAAA:G | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs35053153:80131048:T:TG | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs685487:80136129:A:G:+ | 4 | HNSC,THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs16971368:80104175:A:G:+ | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs10693724:80129005:G:GGAGA | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs16971515:80187732:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs7166189:80172385:A:C:+ | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs72734743:80115348:C:T | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs11632589:80192767:T:C | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs7175444:80124236:C:T:+ | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs10163099:80133764:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs7176987:80119159:A:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs16971369:80105125:T:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs4779160:80103113:T:A | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs55918454:80119844:T:C | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs2035027:80106535:T:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs16971450:80154571:C:T:- | 3 | HNSC,THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs7166109:80126475:A:G:- | 3 | HNSC,THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs16971376:80107090:C:T:+ | 3 | HNSC,THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs62026622:80102275:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs56365434:80107333:T:C | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs6495444:80107797:C:G | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs16971429:80139251:C:T:+ | 5 | HNSC,BLCA,THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs7165770:80126393:A:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs62026649:80110590:G:A | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs1114169:80112327:A:C | 0 | | 5 | HNSC,BLCA,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7183689:80164190:T:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs4994247:80212150:T:C | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs8043145:80100934:G:A | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs62026621:80102172:A:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs1055947:80212826:T:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7172478:80211673:G:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs2067099:80120285:T:C | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs4592609:80212491:C:T | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs7167927:80211522:G:A | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7173507:80211603:T:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7173566:80211691:T:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7172663:80211706:G:C | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs5813999:80211817:GTGGCTCTGGC:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs934136:80211896:A:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs934135:80212008:T:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs2903135:80212276:T:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs2865932:80212280:C:G | 0 | | 4 | HNSC,THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs4994244:80212142:G:C | 0 | | 3 | HNSC,THCA,LGG | ENSG00000261229 | MTHFS | rs1114170:80112067:A:G:- | 4 | BLCA,THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs661478:80115100:C:T | 2 | THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs35056051:80110458:TC:T | 3 | THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs632291:80106461:T:A | 2 | THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs898436:80117132:C:T | 3 | THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs600671:80117232:A:G:+ | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs7178799:80119323:T:C | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs665629:80119231:C:A | 3 | THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs668641:80118624:C:T | 3 | THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs599842:80111891:A:G:+ | 0 | | 1 | THCA | ENSG00000261229 | MTHFS | rs644315:80113549:C:T | 3 | THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs1675181:80111638:C:T:+ | 3 | THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs673018:80115347:C:T | 3 | THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs673079:80115406:G:A | 2 | THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs1615963:80115826:C:T | 3 | THCA,BRCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs7171819:80108019:A:G | 0 | | 2 | THCA,BRCA | ENSG00000261229 | MTHFS | rs1870576:80107128:T:C | 0 | | 2 | THCA,BRCA | ENSG00000261229 | MTHFS | rs56276703:80106859:CGTGTGT:C | 2 | THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs2733103:80138571:C:T | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs634841:80121364:C:T | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs7177659:80158042:G:T:- | 2 | THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs611611:80106482:G:T:+ | 0 | | 2 | THCA,BRCA | ENSG00000261229 | MTHFS | rs770144:80100717:G:A | 2 | THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs72734760:80172356:C:T | 0 | | 2 | THCA,LGG | ENSG00000261229 | MTHFS | rs2733106:80177687:A:G | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs2733107:80178612:T:A | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs2586153:80172133:C:T | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs676598:80125423:T:C | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs1081240:80090971:T:A | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs682423:80102774:A:G:- | 0 | | 2 | THCA,LGG | ENSG00000261229 | MTHFS | rs35291666:80113757:ACT:A | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs591452:80131159:G:C | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs1088036:80094341:A:G:- | 0 | | 1 | THCA | ENSG00000261229 | MTHFS | rs11635091:80169927:T:C | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs707188:80100264:A:G | 2 | THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs17211644:80116362:C:T:+ | 2 | THCA,LGG | 0 | | ENSG00000261229 | MTHFS | rs166870:80069762:C:T:+ | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs57141546:80214291:C:T | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs34924411:80076005:A:AC | 0 | | 1 | THCA | ENSG00000261229 | MTHFS | rs12916091:80222572:T:G | 0 | | 1 | THCA | ENSG00000261229 | MTHFS | rs57972189:80214230:A:G | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs60250355:80214259:C:T | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs57425739:80214285:A:G | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs28434359:80214242:C:T | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs72736547:80214565:A:G | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs34468549:80214612:G:A | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs34589265:80214662:A:G | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs34397803:80214677:T:G | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs71151002:80214976:GTGC:G | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs1134264:80212912:A:C | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs3178647:80212956:T:C | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs34550290:80213297:T:TCA | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs11639330:80210436:G:A | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs11639331:80210445:G:A | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs8026908:80210740:A:G | 0 | | 3 | THCA,BRCA,LGG | ENSG00000261229 | MTHFS | rs11854390:80224817:C:T | 0 | | 1 | THCA | ENSG00000261229 | MTHFS | rs16971460:80157583:T:C | 0 | | 1 | THCA | ENSG00000261229 | MTHFS | rs1081239:80088352:C:T | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs1081226:80092104:G:A | 1 | THCA | 0 | | ENSG00000261229 | MTHFS | rs8036559:80170563:C:T | 0 | | 1 | THCA | ENSG00000261229 | MTHFS | rs2115535:80195199:G:A | 0 | | 1 | THCA | ENSG00000261229 | MTHFS | rs282764:80082958:A:G | 0 | | 1 | THCA | ENSG00000261229 | MTHFS | rs61528446:80176034:CACCTTACT:C | 0 | | 1 | BRCA | ENSG00000261229 | MTHFS | rs1113983:80166597:G:T:- | 0 | | 1 | BRCA | ENSG00000261229 | MTHFS | rs12438550:80192290:T:C | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12440609:80191488:C:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs4485317:80191686:T:C | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs2865825:80189533:G:A | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs2115538:80190915:G:A | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs36067451:80196973:A:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs113822534:80197328:G:A | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs7163342:80198417:C:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12185084:80136647:C:T:- | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs17284990:80144197:T:C | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs8032039:80126770:G:A | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12443213:80209849:G:T:- | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12442814:80206041:G:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12908347:80212324:G:C | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12439318:80201974:G:C | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs4778733:80203406:A:G | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12438337:80207919:A:G | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs185019709:80197387:A:G | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs368210320:80197559:C:A | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs71409260:80211799:C:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs17215033:80225094:G:A | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs35512725:80206964:C:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs72734737:80106042:G:A | 0 | | 1 | LGG | ENSG00000261229 | MTHFS | rs34847355:80221031:T:G | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12901048:80223605:C:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs34284386:80214476:G:C | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs2303824:80215597:G:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12442408:80216325:A:G | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs35769579:80232502:G:A | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12916561:80231276:T:C | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12906791:80233055:G:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs12907827:80233135:T:C | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs34427016:80195936:TATC:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs151135208:80043379:T:C | 0 | | 1 | LGG | ENSG00000261229 | MTHFS | rs12440798:80186340:C:T | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs4328397:80187102:T:C | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs56372426:80105671:C:G | 1 | LGG | 0 | | ENSG00000261229 | MTHFS | rs11853662:80070857:C:T:- | 1 | LGG | 0 | |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000261229.4 | ENST00000567415.1 | 73 | 367 | 146 | ENSG00000261229.4 | ENST00000615374.3 | 81 | 331 | 86 | ENSG00000261229.4 | ENST00000611007.1 | 148 | 93 | 539 |
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