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lncRNA: ENSG00000261229

Summary for MTHFS

Gene summary

Gene information	Ensembl ID	ENSG00000261229
	Gene symbol	MTHFS
	Gene name
	HGNC
	Entrez ID
	Gene type	lincRNA
	Synonyms
	UniProtAcc

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Structure and expression level for MTHFS

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for MTHFS

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for MTHFS

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for MTHFS

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for MTHFS

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID	LncRNA Name	SNP info	Number of Positive corelated Cancer	Positive corelated Cancer	Number of Negative corelated Cancer	Negative corelated Cancer
ENSG00000261229	MTHFS	rs11636341:80207927:T:G	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs10519247:80208164:A:G:-	0		4	PRAD,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs58745619:80208186:C:CTAA	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs3088265:80208377:G:A	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs12910053:80209174:C:T	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs11631272:80208341:G:A	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs11638928:80209714:A:G	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs8026997:80163022:C:T:+	5	PRAD,HNSC,THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs6495455:80202833:T:C	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs6495456:80202906:C:T	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs1864240:80205310:A:C	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7174273:80205568:A:G	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs17885346:80205837:A:G	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs12915498:80172774:C:T:+	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs28837525:80209908:C:T	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs28830831:80210032:G:C	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs28524544:80210328:C:T	0		4	PRAD,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7179584:80213049:G:A	0		3	PRAD,THCA,LGG
ENSG00000261229	MTHFS	rs3178646:80213023:T:C	0		3	PRAD,THCA,LGG
ENSG00000261229	MTHFS	rs12951:80213031:C:T	0		3	PRAD,THCA,LGG
ENSG00000261229	MTHFS	rs16971581:80214708:T:G	0		3	PRAD,THCA,LGG
ENSG00000261229	MTHFS	rs584055:80126521:A:T	5	PRAD,HNSC,THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs622506:80139195:A:C	5	PRAD,HNSC,THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs67481680:80214566:T:C	0		5	PRAD,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs6495452:80164088:T:C	0		4	PRAD,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs642697:80121160:C:T	5	PRAD,HNSC,THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs4994245:80212143:C:A	0		4	PRAD,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs4994246:80212149:C:A	0		4	PRAD,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs4573897:80187225:G:A	0		2	LUSC,THCA
ENSG00000261229	MTHFS	rs4779163:80126260:A:G:+	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs4779162:80126245:A:G:-	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs35404207:80130958:TA:T	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs11854561:80136772:A:G:-	5	LUSC,HNSC,THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs2115536:80194247:C:T:+	0		1	LUSC
ENSG00000261229	MTHFS	rs34652312:80129288:C:T	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7180995:80124974:A:G	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs8042153:80125551:G:A	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62027960:80121949:T:C	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs12899012:80122599:G:A	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs60440244:80122613:CA:C	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs59743714:80122615:C:G	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs34567105:80122810:CTT:C	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs28445348:80122924:C:G	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs62027963:80123037:G:C	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs9888688:80123718:G:A	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs9888686:80123727:C:T	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs7175431:80124219:C:T	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs7177027:80124383:T:C	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs4238512:80183898:A:C:-	1	LUSC	0
ENSG00000261229	MTHFS	rs71453464:80129172:ATGGAGGATGGCC:A	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs4778727:80129742:C:A	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs4779164:80130202:G:A	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs34195307:80131044:T:G	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7174615:80131082:C:T	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs71453465:80131127:TCAAAAACAAAAA:T	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7175723:80131488:G:C	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs35919462:80131692:C:T	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs12903775:80131970:A:G	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs60843106:80132626:A:G	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs12904243:80132133:C:A	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7175620:80122418:T:C	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs76100877:80193882:GTA:G	0		1	LUSC
ENSG00000261229	MTHFS	rs11856431:80198784:A:G	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs12912880:80197396:G:C	0		4	LUSC,HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs11637477:80193295:C:T	0		1	LUSC
ENSG00000261229	MTHFS	rs6495451:80164053:C:T	0		1	LUSC
ENSG00000261229	MTHFS	rs34375570:80189760:AG:A	0		1	LUSC
ENSG00000261229	MTHFS	rs11855732:80198438:G:A	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7257:80191343:G:A	0		1	LUSC
ENSG00000261229	MTHFS	rs2115540:80190308:A:G	0		1	LUSC
ENSG00000261229	MTHFS	rs7166155:80126583:A:G	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs34123440:80126615:C:T	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs5813998:80189453:G:GC	0		1	LUSC
ENSG00000261229	MTHFS	rs3826008:80189805:G:T	0		1	LUSC
ENSG00000261229	MTHFS	rs2903105:80189523:C:G	0		1	LUSC
ENSG00000261229	MTHFS	rs35144922:80127913:T:C	0		5	LUSC,HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs55730276:80193606:G:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs72734776:80194045:A:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62028024:80194094:T:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs56173860:80199667:G:T	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62027997:80178652:T:C	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs8030291:80199405:A:T	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62028025:80195693:G:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs55664603:80184171:G:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62027992:80174492:G:A	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62027993:80175296:C:T	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs60269787:80176016:T:C	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs375489261:80168321:AAAAT:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62027990:80170638:G:A	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs141399187:80185085:G:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62028026:80203706:C:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs72736542:80206194:G:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62028027:80206213:C:T	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs17286040:80184983:C:T:+	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62028020:80185687:T:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs72736553:80228175:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs34638170:80230331:A:G	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs62025486:80230557:T:C	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs79182819:80189398:C:T	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs57245941:80192918:T:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs146815544:80218038:TTTTG:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs77489183:80211875:G:A	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs60995187:80176295:C:T	0		4	HNSC,BLCA,THCA,LGG
ENSG00000261229	MTHFS	rs62025482:80222369:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs55789254:80211597:G:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs17286886:80215601:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs72736550:80220499:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs138289636:80210770:TG:T	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs117218282:80210772:C:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs58978967:80210947:G:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs8039272:80196750:T:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs11855622:80198198:C:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62025483:80222716:C:G	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs62025484:80222721:G:A	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs142028614:80223458:G:GTC	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs62027985:80147183:A:G	0		4	HNSC,BLCA,THCA,LGG
ENSG00000261229	MTHFS	rs4779165:80151013:A:G	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs7173130:80151907:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs62027986:80147936:G:A	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs62027987:80148220:T:C	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs141107808:80221943:TTTCC:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs9635381:80165143:A:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs72734752:80150080:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs6495446:80154982:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs7167420:80211413:C:A	0		4	HNSC,BLCA,THCA,LGG
ENSG00000261229	MTHFS	rs28589505:80127374:C:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62027983:80140735:T:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs8030396:80199249:A:G:+	4	HNSC,THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs61669541:80145798:T:TCTC	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs2054287:80143035:T:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs4778729:80135259:C:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs10519253:80136462:A:T:-	0		4	HNSC,BLCA,THCA,LGG
ENSG00000261229	MTHFS	rs12900601:80185681:T:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs2054288:80143075:A:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs4778728:80129813:T:C	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs71874818:80189058:GCGTGCGCGCGCCGGGAGGGGAAA:G	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs35053153:80131048:T:TG	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs685487:80136129:A:G:+	4	HNSC,THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs16971368:80104175:A:G:+	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs10693724:80129005:G:GGAGA	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs16971515:80187732:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs7166189:80172385:A:C:+	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs72734743:80115348:C:T	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs11632589:80192767:T:C	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs7175444:80124236:C:T:+	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs10163099:80133764:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs7176987:80119159:A:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs16971369:80105125:T:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs4779160:80103113:T:A	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs55918454:80119844:T:C	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs2035027:80106535:T:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs16971450:80154571:C:T:-	3	HNSC,THCA,LGG	0
ENSG00000261229	MTHFS	rs7166109:80126475:A:G:-	3	HNSC,THCA,LGG	0
ENSG00000261229	MTHFS	rs16971376:80107090:C:T:+	3	HNSC,THCA,LGG	0
ENSG00000261229	MTHFS	rs62026622:80102275:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs56365434:80107333:T:C	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs6495444:80107797:C:G	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs16971429:80139251:C:T:+	5	HNSC,BLCA,THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs7165770:80126393:A:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs62026649:80110590:G:A	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs1114169:80112327:A:C	0		5	HNSC,BLCA,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7183689:80164190:T:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs4994247:80212150:T:C	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs8043145:80100934:G:A	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs62026621:80102172:A:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs1055947:80212826:T:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7172478:80211673:G:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs2067099:80120285:T:C	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs4592609:80212491:C:T	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs7167927:80211522:G:A	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7173507:80211603:T:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7173566:80211691:T:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7172663:80211706:G:C	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs5813999:80211817:GTGGCTCTGGC:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs934136:80211896:A:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs934135:80212008:T:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs2903135:80212276:T:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs2865932:80212280:C:G	0		4	HNSC,THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs4994244:80212142:G:C	0		3	HNSC,THCA,LGG
ENSG00000261229	MTHFS	rs1114170:80112067:A:G:-	4	BLCA,THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs661478:80115100:C:T	2	THCA,LGG	0
ENSG00000261229	MTHFS	rs35056051:80110458:TC:T	3	THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs632291:80106461:T:A	2	THCA,LGG	0
ENSG00000261229	MTHFS	rs898436:80117132:C:T	3	THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs600671:80117232:A:G:+	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs7178799:80119323:T:C	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs665629:80119231:C:A	3	THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs668641:80118624:C:T	3	THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs599842:80111891:A:G:+	0		1	THCA
ENSG00000261229	MTHFS	rs644315:80113549:C:T	3	THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs1675181:80111638:C:T:+	3	THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs673018:80115347:C:T	3	THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs673079:80115406:G:A	2	THCA,LGG	0
ENSG00000261229	MTHFS	rs1615963:80115826:C:T	3	THCA,BRCA,LGG	0
ENSG00000261229	MTHFS	rs7171819:80108019:A:G	0		2	THCA,BRCA
ENSG00000261229	MTHFS	rs1870576:80107128:T:C	0		2	THCA,BRCA
ENSG00000261229	MTHFS	rs56276703:80106859:CGTGTGT:C	2	THCA,LGG	0
ENSG00000261229	MTHFS	rs2733103:80138571:C:T	1	THCA	0
ENSG00000261229	MTHFS	rs634841:80121364:C:T	1	THCA	0
ENSG00000261229	MTHFS	rs7177659:80158042:G:T:-	2	THCA,LGG	0
ENSG00000261229	MTHFS	rs611611:80106482:G:T:+	0		2	THCA,BRCA
ENSG00000261229	MTHFS	rs770144:80100717:G:A	2	THCA,LGG	0
ENSG00000261229	MTHFS	rs72734760:80172356:C:T	0		2	THCA,LGG
ENSG00000261229	MTHFS	rs2733106:80177687:A:G	1	THCA	0
ENSG00000261229	MTHFS	rs2733107:80178612:T:A	1	THCA	0
ENSG00000261229	MTHFS	rs2586153:80172133:C:T	1	THCA	0
ENSG00000261229	MTHFS	rs676598:80125423:T:C	1	THCA	0
ENSG00000261229	MTHFS	rs1081240:80090971:T:A	1	THCA	0
ENSG00000261229	MTHFS	rs682423:80102774:A:G:-	0		2	THCA,LGG
ENSG00000261229	MTHFS	rs35291666:80113757:ACT:A	1	THCA	0
ENSG00000261229	MTHFS	rs591452:80131159:G:C	1	THCA	0
ENSG00000261229	MTHFS	rs1088036:80094341:A:G:-	0		1	THCA
ENSG00000261229	MTHFS	rs11635091:80169927:T:C	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs707188:80100264:A:G	2	THCA,LGG	0
ENSG00000261229	MTHFS	rs17211644:80116362:C:T:+	2	THCA,LGG	0
ENSG00000261229	MTHFS	rs166870:80069762:C:T:+	1	THCA	0
ENSG00000261229	MTHFS	rs57141546:80214291:C:T	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs34924411:80076005:A:AC	0		1	THCA
ENSG00000261229	MTHFS	rs12916091:80222572:T:G	0		1	THCA
ENSG00000261229	MTHFS	rs57972189:80214230:A:G	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs60250355:80214259:C:T	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs57425739:80214285:A:G	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs28434359:80214242:C:T	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs72736547:80214565:A:G	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs34468549:80214612:G:A	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs34589265:80214662:A:G	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs34397803:80214677:T:G	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs71151002:80214976:GTGC:G	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs1134264:80212912:A:C	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs3178647:80212956:T:C	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs34550290:80213297:T:TCA	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs11639330:80210436:G:A	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs11639331:80210445:G:A	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs8026908:80210740:A:G	0		3	THCA,BRCA,LGG
ENSG00000261229	MTHFS	rs11854390:80224817:C:T	0		1	THCA
ENSG00000261229	MTHFS	rs16971460:80157583:T:C	0		1	THCA
ENSG00000261229	MTHFS	rs1081239:80088352:C:T	1	THCA	0
ENSG00000261229	MTHFS	rs1081226:80092104:G:A	1	THCA	0
ENSG00000261229	MTHFS	rs8036559:80170563:C:T	0		1	THCA
ENSG00000261229	MTHFS	rs2115535:80195199:G:A	0		1	THCA
ENSG00000261229	MTHFS	rs282764:80082958:A:G	0		1	THCA
ENSG00000261229	MTHFS	rs61528446:80176034:CACCTTACT:C	0		1	BRCA
ENSG00000261229	MTHFS	rs1113983:80166597:G:T:-	0		1	BRCA
ENSG00000261229	MTHFS	rs12438550:80192290:T:C	1	LGG	0
ENSG00000261229	MTHFS	rs12440609:80191488:C:T	1	LGG	0
ENSG00000261229	MTHFS	rs4485317:80191686:T:C	1	LGG	0
ENSG00000261229	MTHFS	rs2865825:80189533:G:A	1	LGG	0
ENSG00000261229	MTHFS	rs2115538:80190915:G:A	1	LGG	0
ENSG00000261229	MTHFS	rs36067451:80196973:A:T	1	LGG	0
ENSG00000261229	MTHFS	rs113822534:80197328:G:A	1	LGG	0
ENSG00000261229	MTHFS	rs7163342:80198417:C:T	1	LGG	0
ENSG00000261229	MTHFS	rs12185084:80136647:C:T:-	1	LGG	0
ENSG00000261229	MTHFS	rs17284990:80144197:T:C	1	LGG	0
ENSG00000261229	MTHFS	rs8032039:80126770:G:A	1	LGG	0
ENSG00000261229	MTHFS	rs12443213:80209849:G:T:-	1	LGG	0
ENSG00000261229	MTHFS	rs12442814:80206041:G:T	1	LGG	0
ENSG00000261229	MTHFS	rs12908347:80212324:G:C	1	LGG	0
ENSG00000261229	MTHFS	rs12439318:80201974:G:C	1	LGG	0
ENSG00000261229	MTHFS	rs4778733:80203406:A:G	1	LGG	0
ENSG00000261229	MTHFS	rs12438337:80207919:A:G	1	LGG	0
ENSG00000261229	MTHFS	rs185019709:80197387:A:G	1	LGG	0
ENSG00000261229	MTHFS	rs368210320:80197559:C:A	1	LGG	0
ENSG00000261229	MTHFS	rs71409260:80211799:C:T	1	LGG	0
ENSG00000261229	MTHFS	rs17215033:80225094:G:A	1	LGG	0
ENSG00000261229	MTHFS	rs35512725:80206964:C:T	1	LGG	0
ENSG00000261229	MTHFS	rs72734737:80106042:G:A	0		1	LGG
ENSG00000261229	MTHFS	rs34847355:80221031:T:G	1	LGG	0
ENSG00000261229	MTHFS	rs12901048:80223605:C:T	1	LGG	0
ENSG00000261229	MTHFS	rs34284386:80214476:G:C	1	LGG	0
ENSG00000261229	MTHFS	rs2303824:80215597:G:T	1	LGG	0
ENSG00000261229	MTHFS	rs12442408:80216325:A:G	1	LGG	0
ENSG00000261229	MTHFS	rs35769579:80232502:G:A	1	LGG	0
ENSG00000261229	MTHFS	rs12916561:80231276:T:C	1	LGG	0
ENSG00000261229	MTHFS	rs12906791:80233055:G:T	1	LGG	0
ENSG00000261229	MTHFS	rs12907827:80233135:T:C	1	LGG	0
ENSG00000261229	MTHFS	rs34427016:80195936:TATC:T	1	LGG	0
ENSG00000261229	MTHFS	rs151135208:80043379:T:C	0		1	LGG
ENSG00000261229	MTHFS	rs12440798:80186340:C:T	1	LGG	0
ENSG00000261229	MTHFS	rs4328397:80187102:T:C	1	LGG	0
ENSG00000261229	MTHFS	rs56372426:80105671:C:G	1	LGG	0
ENSG00000261229	MTHFS	rs11853662:80070857:C:T:-	1	LGG	0

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000261229.4	ENST00000567415.1	73	367	146
ENSG00000261229.4	ENST00000615374.3	81	331	86
ENSG00000261229.4	ENST00000611007.1	148	93	539

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential