 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SLC16A3,MRPL37,GRK6,TOM1,ARHGDIA,GET3,ETHE1,WBP2,FTH1,MYDGF,YIF1B,COPE,RHOG,CCT7,GAS2L1,AP2S1,ACADS,CYB5R3,CLPP,GAPDH,LMAN2,ECHS1,NCLN,PYGL,GALK1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000259456 | ENST00000614698 | exon_skip_62840 | chr11:70421469-70421580 | -11.64 | -0.1200 | CTTN | ENST00000301843 | In-frame | | ENSG00000259456 | ENST00000614698 | exon_skip_334375 | chr2:227347225-227347384 | -14.44 | -0.1256 | MFF | ENST00000353339 | In-frame | | ENSG00000259456 | ENST00000614698 | exon_skip_484062 | chr8:73030335-73030395 | -7.32 | -0.1785 | TERF1 | ENST00000276603 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000259456 | ENST00000558899 | exon_skip_41841 | chr10:68756272-68756483 | -20.88 | -0.1207 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000259456 | ENST00000614698 | exon_skip_111863 | chr14:23565815-23565892 | -13.06 | -0.2968 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000259456 | ENST00000614698 | exon_skip_114365 | chr14:74290026-74290118 | -11.35 | -0.1599 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000259456 | ENST00000614698 | exon_skip_133217 | chr16:8635038-8635079 | -8.40 | -0.5250 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000259456 | ENST00000614698 | exon_skip_139422 | chr16:89114338-89114487 | -20.68 | -0.1532 | ACSF3 | ENST00000317447,ENST00000406948 | Frame-shift | | ENSG00000259456 | ENST00000614698 | exon_skip_300663 | chr19:1425877-1425960 | -8.74 | -0.1784 | DAZAP1 | ENST00000233078 | Frame-shift | | ENSG00000259456 | ENST00000614698 | exon_skip_327748 | chr2:95410863-95411026 | -18.73 | -0.1523 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | | ENSG00000259456 | ENST00000614698 | exon_skip_382458 | chr3:38131595-38131638 | -7.43 | -0.2858 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000259456 | ENST00000614698 | exon_skip_470226 | chr7:103307595-103307708 | -10.40 | -0.1677 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000259456 | ENST00000558899 | exon_skip_327433 | chr2:86125794-86125880 | -7.54 | -0.1047 | PTCD3 | ENST00000254630 | Frame-shift | | ENSG00000259456 | ENST00000614698 | exon_skip_5818 | chr1:45568484-45568684 | -27.62 | -0.1526 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000259456 | hsa-mir-511 | ENST00000558899 | chr20:50931503-50931581 | 185.00 | -55.02 | 85 | NA | | ENSG00000259456 | hsa-mir-511 | ENST00000558899 | chr20:50931671-50931756 | 177.00 | -57.45 | 88 | NA | | ENSG00000259456 | hsa-mir-511 | ENST00000558899 | chr20:50931376-50931463 | 169.00 | -65.81 | 86 | NA | | ENSG00000259456 | hsa-mir-511 | ENST00000558899 | chr20:50931186-50931274 | 162.00 | -68.45 | 66 | NA | | ENSG00000259456 | hsa-mir-511 | ENST00000558899 | chr20:50931577-50931669 | 161.00 | -52.95 | 88 | NA | | ENSG00000259456 | hsa-mir-511 | ENST00000558899 | chr20:50931103-50931182 | 151.00 | -59.29 | 55 | NA | | ENSG00000259456 | hsa-mir-511 | ENST00000558899 | chr20:50931774-50931862 | 142.00 | -52.25 | 88 | NA | | ENSG00000259456 | hsa-mir-511 | ENST00000614698 | chr20:50931373-50931460 | 169.00 | -65.81 | 86 | NA | | ENSG00000259456 | hsa-mir-511 | ENST00000614698 | chr20:50931183-50931271 | 162.00 | -68.45 | 66 | NA | | ENSG00000259456 | hsa-mir-511 | ENST00000614698 | chr20:50931100-50931179 | 151.00 | -59.29 | 55 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000259456.3 | ENST00000558899.2 | 124 | 524 | 150 | | ENSG00000259456.3 | ENST00000614698.1 | 61 | 305 | 490 |
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