 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | DPP3,HCK,TAGLN2,TPM3,SELPLG,CD86,C2,KPNA2,ITGB2,ARPC1B,MAN2B1,EFHD2,CTSB,TUBA1C,SEC61A1,SPI1,ACTR3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000258708 | ENST00000556667 | exon_skip_150854 | chr17:32366664-32366757 | -13.77 | -0.1886 | ZNF207 | ENST00000321233 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000258708 | ENST00000556667 | exon_skip_111863 | chr14:23565815-23565892 | -20.26 | -0.3823 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000258708 | ENST00000556667 | exon_skip_41841 | chr10:68756272-68756483 | -24.39 | -0.1270 | CCAR1 | ENST00000265872 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000258708 | hsa-mir-142 | ENST00000556667 | chr14:37172068-37172155 | 172.00 | -73.13 | 87 | NA | | ENSG00000258708 | hsa-mir-142 | ENST00000556667 | chr14:37172804-37172888 | 158.00 | -76.77 | 86 | NA | | ENSG00000258708 | hsa-mir-142 | ENST00000556667 | chr14:37173150-37173234 | 155.00 | -77.74 | 88 | NA | | ENSG00000258708 | hsa-mir-142 | ENST00000556667 | chr14:37172569-37172656 | 150.00 | -87.46 | 90 | NA | | ENSG00000258708 | hsa-mir-142 | ENST00000556667 | chr14:37172411-37172494 | 147.00 | -84.15 | 88 | NA | | ENSG00000258708 | hsa-mir-142 | ENST00000556667 | chr14:37173666-37173751 | 145.00 | -68.84 | 83 | NA | | ENSG00000258708 | hsa-mir-142 | ENST00000556667 | chr14:37173013-37173103 | 141.00 | -73.08 | 86 | NA | | ENSG00000258708 | hsa-mir-185 | ENST00000556667 | chr14:37172053-37172138 | 198.00 | -85.93 | 82 | NA | | ENSG00000258708 | hsa-mir-185 | ENST00000556667 | chr14:37172597-37172675 | 198.00 | -81.09 | 83 | NA | | ENSG00000258708 | hsa-mir-185 | ENST00000556667 | chr14:37172220-37172301 | 177.00 | -91.48 | 79 | NA | | ENSG00000258708 | hsa-mir-185 | ENST00000556667 | chr14:37172499-37172581 | 177.00 | -105.04 | 86 | NA | | ENSG00000258708 | hsa-mir-185 | ENST00000556667 | chr14:37172792-37172865 | 157.00 | -75.70 | 75 | NA | | ENSG00000258708 | hsa-mir-185 | ENST00000556667 | chr14:37172328-37172409 | 153.00 | -95.93 | 75 | NA | | ENSG00000258708 | hsa-mir-185 | ENST00000556667 | chr14:37173229-37173312 | 146.00 | -69.18 | 82 | NA | | ENSG00000258708 | hsa-mir-185 | ENST00000556667 | chr14:37173133-37173209 | 144.00 | -76.73 | 70 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37172423-37172488 | 184.00 | -67.82 | 70 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37173588-37173660 | 177.00 | -61.04 | 73 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37171982-37172051 | 171.00 | -65.58 | 67 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37173081-37173147 | 167.00 | -59.86 | 67 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37172847-37172920 | 164.00 | -52.83 | 75 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37173732-37173804 | 157.00 | -54.74 | 72 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37172684-37172754 | 156.00 | -65.43 | 75 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37173351-37173422 | 155.00 | -54.53 | 70 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37172550-37172615 | 151.00 | -68.47 | 65 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37173177-37173248 | 151.00 | -59.01 | 71 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37172926-37173006 | 147.00 | -65.87 | 77 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37173416-37173487 | 146.00 | -52.80 | 68 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37172134-37172210 | 144.00 | -67.64 | 74 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37172256-37172334 | 142.00 | -72.96 | 78 | NA | | ENSG00000258708 | hsa-mir-21 | ENST00000556667 | chr14:37173668-37173731 | 141.00 | -55.27 | 69 | NA | | ENSG00000258708 | hsa-mir-1307 | ENST00000556667 | chr14:37172478-37172628 | 242.00 | -146.72 | 152 | NA | | ENSG00000258708 | hsa-mir-1307 | ENST00000556667 | chr14:37173502-37173660 | 230.00 | -111.86 | 160 | NA | | ENSG00000258708 | hsa-mir-1307 | ENST00000556667 | chr14:37172816-37172960 | 222.00 | -106.66 | 151 | NA | | ENSG00000258708 | hsa-mir-1307 | ENST00000556667 | chr14:37171942-37172088 | 217.00 | -131.26 | 148 | NA | | ENSG00000258708 | hsa-mir-1307 | ENST00000556667 | chr14:37172253-37172425 | 214.00 | -157.14 | 176 | NA | | ENSG00000258708 | hsa-mir-1307 | ENST00000556667 | chr14:37173047-37173211 | 213.00 | -125.26 | 163 | NA | | ENSG00000258708 | hsa-mir-1307 | ENST00000556667 | chr14:37172628-37172791 | 190.00 | -140.51 | 161 | NA | | ENSG00000258708 | hsa-mir-1307 | ENST00000556667 | chr14:37173319-37173480 | 181.00 | -109.69 | 162 | NA | | ENSG00000258708 | hsa-mir-1307 | ENST00000556667 | chr14:37172127-37172260 | 144.00 | -125.68 | 136 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37172579-37172663 | 192.00 | -91.89 | 76 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37172711-37172799 | 188.00 | -93.87 | 93 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37173349-37173432 | 183.00 | -78.24 | 82 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37172832-37172915 | 168.00 | -78.92 | 84 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37172178-37172259 | 167.00 | -92.93 | 83 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37173177-37173266 | 167.00 | -82.09 | 89 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37173259-37173356 | 166.00 | -77.03 | 93 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37172496-37172590 | 156.00 | -112.68 | 91 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37172926-37173005 | 151.00 | -87.46 | 83 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37173703-37173795 | 149.00 | -81.05 | 91 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37172327-37172424 | 146.00 | -111.39 | 86 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37173573-37173655 | 144.00 | -85.43 | 83 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37173081-37173171 | 142.00 | -92.39 | 84 | NA | | ENSG00000258708 | hsa-mir-942 | ENST00000556667 | chr14:37173442-37173522 | 141.00 | -76.74 | 80 | NA | | ENSG00000258708 | hsa-mir-4677 | ENST00000556667 | chr14:37173679-37173756 | 206.00 | -53.77 | 79 | NA | | ENSG00000258708 | hsa-mir-4677 | ENST00000556667 | chr14:37172581-37172655 | 181.00 | -64.23 | 72 | NA | | ENSG00000258708 | hsa-mir-4677 | ENST00000556667 | chr14:37172889-37172963 | 178.00 | -50.36 | 78 | NA | | ENSG00000258708 | hsa-mir-4677 | ENST00000556667 | chr14:37171924-37171998 | 176.00 | -53.77 | 77 | NA | | ENSG00000258708 | hsa-mir-4677 | ENST00000556667 | chr14:37173112-37173204 | 163.00 | -68.33 | 90 | NA | | ENSG00000258708 | hsa-mir-4677 | ENST00000556667 | chr14:37173026-37173106 | 155.00 | -50.49 | 76 | NA | | ENSG00000258708 | hsa-mir-4677 | ENST00000556667 | chr14:37172334-37172416 | 152.00 | -74.22 | 79 | NA | | ENSG00000258708 | hsa-mir-4677 | ENST00000556667 | chr14:37172252-37172338 | 141.00 | -75.01 | 83 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-142,TOM1L2 | THCA,LGG,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-142,CRY2 | BRCA,LGG,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-142,TEF | KICH,THCA,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-142,CASKIN2 | THCA,LGG,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-142,KLHDC1 | BRCA,LGG,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-142,PAK4 | PCPG,KICH,THCA,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-142,PRDM11 | THCA,LGG,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-142,ZFP2 | BRCA,THCA,LGG,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-142,MAGI1 | KICH,BRCA,THCA,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-21,GDAP1 | PCPG,THCA,LGG,UCS,SARC | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-1307,ANKRA2 | KICH,BRCA,LGG,SARC,THYM | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-942,KLHDC1 | KICH,BRCA,LGG,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,EPC2 | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,MYO9A | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,PRKAA2 | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,BAZ2B | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,OBSL1 | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,BMPR2 | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,MARF1 | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,LTBP3 | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,CASKIN2 | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,ZFP28 | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-185,KMT2E | KICH,UCS,SARC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-4677,CGRRF1 | BRCA,LGG,ACC,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-4677,CRY2 | BRCA,LGG,ACC,UCS,THYM,KIRP | | ENSG00000258708 | SLC25A21-AS1,hsa-mir-4677,CALCOCO1 | BRCA,LGG,ACC,UCS,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000258708.1 | ENST00000556667.1 | 65 | 523 | 326 |
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